Wall clock time and date at job start Sat Apr 11 2020 05:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.45737 * 2 1 4 4 C 1.53042 * 109.46380 * 240.01999 * 2 1 3 5 5 H 1.09002 * 109.49523 * 60.86113 * 4 2 1 6 6 N 1.46497 * 109.50154 * 300.74948 * 4 2 1 7 7 C 1.34780 * 119.99932 * 155.19560 * 6 4 2 8 8 O 1.21280 * 120.00021 * 359.97438 * 7 6 4 9 9 C 1.50697 * 120.00107 * 180.02562 * 7 6 4 10 10 S 1.80999 * 109.47175 * 179.97438 * 9 7 6 11 11 C 1.76209 * 99.99898 * 179.97438 * 10 9 7 12 12 H 1.07989 * 119.99928 * 359.97438 * 11 10 9 13 13 C 1.38796 * 119.99642 * 179.97438 * 11 10 9 14 14 N 1.31628 * 120.00332 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99689 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47023 * 60.00256 * 15 13 11 17 17 H 1.48504 * 109.47213 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47289 * 299.99968 * 15 13 11 19 19 C 1.53113 * 109.27874 * 180.80502 * 4 2 1 20 20 C 1.53119 * 109.16134 * 57.66101 * 19 4 2 21 21 C 1.53035 * 109.27621 * 302.34107 * 20 19 4 22 22 N 1.46848 * 109.52659 * 59.17905 * 21 20 19 23 23 C 1.46891 * 111.00424 * 174.15948 * 22 21 20 24 24 C 1.50698 * 109.47164 * 66.05064 * 23 22 21 25 25 C 1.41384 * 126.80687 * 94.99982 * 24 23 22 26 26 C 1.35448 * 103.98528 * 180.20620 * 25 24 23 27 27 O 1.34034 * 106.44971 * 359.65054 * 26 25 24 28 28 N 1.20926 * 111.56615 * 0.38038 * 27 26 25 29 29 H 1.09003 * 109.46820 * 300.03317 * 1 2 3 30 30 H 1.08991 * 109.47150 * 60.02875 * 1 2 3 31 31 H 1.08999 * 109.47279 * 180.02562 * 1 2 3 32 32 H 0.97002 * 120.00422 * 335.19540 * 6 4 2 33 33 H 1.09007 * 109.46851 * 299.99862 * 9 7 6 34 34 H 1.09000 * 109.47781 * 59.99394 * 9 7 6 35 35 H 0.97006 * 120.00223 * 179.97438 * 14 13 11 36 36 H 1.08993 * 109.52413 * 297.75002 * 19 4 2 37 37 H 1.09004 * 109.52164 * 177.56091 * 19 4 2 38 38 H 1.08994 * 109.50297 * 182.40596 * 20 19 4 39 39 H 1.08996 * 109.53873 * 62.30042 * 20 19 4 40 40 H 1.09008 * 109.46455 * 299.16901 * 21 20 19 41 41 H 1.09006 * 109.46616 * 179.19818 * 21 20 19 42 42 H 1.09001 * 109.47669 * 306.05208 * 23 22 21 43 43 H 1.09003 * 109.47465 * 186.04730 * 23 22 21 44 44 H 1.08002 * 128.00125 * 359.93933 * 25 24 23 45 45 H 1.08001 * 126.77311 * 179.73996 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0399 -0.7210 -1.2499 5 1 1.6894 -0.1983 -2.1399 6 7 1.5372 -2.0970 -1.2601 7 6 1.4125 -2.7603 -2.4267 8 8 1.7160 -2.2179 -3.4681 9 6 0.8948 -4.1755 -2.4372 10 16 0.8429 -4.7863 -4.1403 11 6 0.2201 -6.4113 -3.8637 12 1 -0.0014 -6.7410 -2.8595 13 6 0.0143 -7.2675 -4.9365 14 7 0.2848 -6.8658 -6.1605 15 14 -0.6452 -8.9904 -4.6432 16 1 -1.9765 -8.9064 -3.9908 17 1 -0.7738 -9.6990 -5.9420 18 1 0.2909 -9.7358 -3.7639 19 6 3.5709 -0.7362 -1.2355 20 6 4.0547 -1.4189 0.0468 21 6 3.4865 -0.6777 1.2591 22 7 2.0193 -0.6917 1.1995 23 6 1.4373 -0.1104 2.4166 24 6 1.7793 1.3556 2.4862 25 6 0.9799 2.4339 2.0421 26 6 1.7253 3.5301 2.3198 27 8 2.8561 3.0866 2.8865 28 7 2.8691 1.8801 2.9677 29 1 -0.3633 0.5144 0.8897 30 1 -0.3633 0.5133 -0.8902 31 1 -0.3634 -1.0276 0.0005 32 1 1.2941 -2.5308 -0.4272 33 1 1.5549 -4.8083 -1.8438 34 1 -0.1089 -4.1986 -2.0126 35 1 0.1413 -7.4644 -6.9103 36 1 3.9456 0.2868 -1.2672 37 1 3.9379 -1.2865 -2.1019 38 1 5.1438 -1.3948 0.0833 39 1 3.7130 -2.4538 0.0600 40 1 3.8403 0.3533 1.2531 41 1 3.8175 -1.1698 2.1737 42 1 1.8413 -0.6197 3.2915 43 1 0.3541 -0.2302 2.3944 44 1 0.0031 2.3926 1.5832 45 1 1.4602 4.5587 2.1246 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278501541.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:03 Heat of formation + Delta-G solvation = 6.368825 kcal Electronic energy + Delta-G solvation = -27573.568906 eV Core-core repulsion = 23719.688164 eV Total energy + Delta-G solvation = -3853.880742 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.88071 -41.44785 -39.75631 -36.49187 -34.72501 -34.56165 -33.75062 -32.88059 -32.25198 -30.31530 -28.41508 -27.68901 -27.43032 -24.55386 -23.68813 -22.99738 -22.34225 -21.43295 -20.16037 -19.83408 -18.61041 -18.56999 -17.90117 -17.25772 -16.86199 -16.77590 -16.49877 -16.18450 -15.94675 -15.61407 -15.39477 -15.30472 -14.66682 -14.56949 -14.32428 -14.20516 -13.80619 -13.54695 -13.47622 -13.14917 -13.14146 -12.90624 -12.85084 -12.80729 -12.63768 -12.42978 -12.16786 -11.87342 -11.72815 -11.59728 -11.43155 -11.11297 -10.99375 -10.86160 -10.53109 -10.25005 -10.01704 -9.53776 -8.63835 -8.32732 -6.10286 0.63751 1.28450 1.29552 1.44814 1.48422 1.58703 1.69468 2.28339 2.35627 2.48006 2.82821 3.01098 3.25728 3.35999 3.53440 3.67733 3.76542 3.94606 4.02770 4.06795 4.28298 4.29512 4.32096 4.34791 4.40574 4.47849 4.53469 4.56071 4.62158 4.70331 4.75628 4.79902 4.85741 4.89140 4.99113 5.00023 5.16197 5.19884 5.24222 5.37724 5.43349 5.57323 5.94006 5.97987 6.21471 6.63928 7.08414 7.34746 7.35874 8.76141 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027295 B = 0.002246 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.600705 B =12463.787704 C =12576.995936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.088 3.912 3 H 0.055 0.945 4 C 0.158 3.842 5 H 0.072 0.928 6 N -0.692 5.692 7 C 0.535 3.465 8 O -0.568 6.568 9 C -0.127 4.127 10 S -0.150 6.150 11 C -0.546 4.546 12 H 0.082 0.918 13 C 0.013 3.987 14 N -0.911 5.911 15 Si 0.998 3.002 16 H -0.261 1.261 17 H -0.279 1.279 18 H -0.263 1.263 19 C -0.132 4.132 20 C -0.110 4.110 21 C 0.064 3.936 22 N -0.517 5.517 23 C 0.128 3.872 24 C -0.025 4.025 25 C -0.238 4.238 26 C -0.050 4.050 27 O 0.079 5.921 28 N -0.389 5.389 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.417 0.583 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.271 0.729 36 H 0.073 0.927 37 H 0.046 0.954 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.029 0.971 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.122 0.878 44 H 0.191 0.809 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.787 20.724 23.034 30.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.021 4.021 3 H 0.073 0.927 4 C 0.052 3.948 5 H 0.090 0.910 6 N -0.346 5.346 7 C 0.321 3.679 8 O -0.446 6.446 9 C -0.279 4.279 10 S 0.077 5.923 11 C -0.694 4.694 12 H 0.100 0.900 13 C -0.192 4.192 14 N -0.548 5.548 15 Si 0.819 3.181 16 H -0.186 1.186 17 H -0.204 1.204 18 H -0.187 1.187 19 C -0.171 4.171 20 C -0.148 4.148 21 C -0.064 4.064 22 N -0.241 5.241 23 C 0.000 4.000 24 C -0.186 4.186 25 C -0.260 4.260 26 C -0.130 4.130 27 O 0.015 5.985 28 N -0.096 5.096 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.255 0.745 33 H 0.123 0.877 34 H 0.126 0.874 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.047 0.953 41 H 0.101 0.899 42 H 0.112 0.888 43 H 0.140 0.860 44 H 0.208 0.792 45 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 2.262 20.601 21.682 29.994 hybrid contribution -1.009 -0.705 0.713 1.423 sum 1.254 19.895 22.396 29.983 Atomic orbital electron populations 1.21963 0.92287 1.03332 1.02982 1.21754 0.96912 0.95150 0.88302 0.92689 1.20961 0.93349 0.82470 0.98023 0.91006 1.45650 1.66135 1.14480 1.08301 1.20012 0.76913 0.87104 0.83893 1.90679 1.50929 1.69383 1.33650 1.23349 1.05282 0.96192 1.03050 1.85545 1.86022 1.15417 1.05283 1.23171 1.50293 0.99274 0.96633 0.90005 1.26123 0.95216 1.03872 0.93984 1.70180 1.46774 1.38300 0.99546 0.85017 0.79091 0.76165 0.77806 1.18574 1.20430 1.18747 1.21944 0.95587 1.01193 0.98393 1.21507 1.00340 0.99949 0.92989 1.22049 0.86854 0.98717 0.98790 1.62275 1.07635 1.52733 1.01434 1.20917 1.02536 0.83280 0.93273 1.24894 0.91619 1.01324 1.00734 1.23154 1.04289 0.90682 1.07838 1.26827 0.85460 1.03383 0.97374 1.84804 1.37583 1.16342 1.59760 1.73912 1.23195 0.91445 1.21045 0.89907 0.92006 0.91708 0.74537 0.87739 0.87374 0.92037 0.90885 0.93548 0.90840 0.91501 0.95290 0.89941 0.88796 0.85977 0.79186 0.73021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 8.47 71.98 0.61 -1.39 16 2 C 0.09 1.43 1.56 44.94 0.07 1.50 16 3 H 0.06 0.93 6.76 -2.39 -0.02 0.92 16 4 C 0.16 3.67 2.26 45.04 0.10 3.77 16 5 H 0.07 2.00 7.58 -2.39 -0.02 1.98 16 6 N -0.69 -17.94 3.71 -442.29 -1.64 -19.58 16 7 C 0.53 19.82 7.81 87.66 0.68 20.50 16 8 O -0.57 -26.29 15.53 -3.03 -0.05 -26.34 16 9 C -0.13 -5.11 6.16 71.24 0.44 -4.67 16 10 S -0.15 -8.38 20.57 -56.49 -1.16 -9.54 16 11 C -0.55 -31.37 9.50 67.95 0.65 -30.73 16 12 H 0.08 4.36 7.80 -2.92 -0.02 4.34 16 13 C 0.01 0.73 5.49 84.86 0.47 1.20 16 14 N -0.91 -56.36 13.22 21.65 0.29 -56.08 16 15 Si 1.00 43.81 29.55 68.60 2.03 45.84 16 16 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 17 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 18 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 19 C -0.13 -3.12 5.67 30.67 0.17 -2.95 16 20 C -0.11 -2.20 5.93 30.65 0.18 -2.01 16 21 C 0.06 1.10 5.10 86.32 0.44 1.54 16 22 N -0.52 -7.80 4.17 -875.64 -3.65 -11.45 16 23 C 0.13 1.57 5.43 85.56 0.46 2.04 16 24 C -0.03 -0.35 4.85 43.58 0.21 -0.14 16 25 C -0.24 -2.23 9.50 22.40 0.21 -2.02 16 26 C -0.05 -0.39 12.30 67.17 0.83 0.44 16 27 O 0.08 1.20 11.20 71.69 0.80 2.01 16 28 N -0.39 -7.06 11.25 -49.55 -0.56 -7.62 16 29 H 0.08 0.71 4.57 -2.39 -0.01 0.70 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.06 0.99 7.39 -2.39 -0.02 0.97 16 32 H 0.42 8.92 7.91 -92.71 -0.73 8.19 16 33 H 0.10 3.85 8.14 -2.39 -0.02 3.83 16 34 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 35 H 0.27 15.57 8.31 -92.70 -0.77 14.80 16 36 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.07 1.46 7.73 -2.39 -0.02 1.44 16 40 H 0.03 0.57 6.89 -2.38 -0.02 0.55 16 41 H 0.08 1.36 8.06 -2.38 -0.02 1.34 16 42 H 0.09 1.17 8.06 -2.39 -0.02 1.15 16 43 H 0.12 1.05 6.32 -2.39 -0.02 1.04 16 44 H 0.19 0.93 7.02 -2.91 -0.02 0.91 16 45 H 0.25 -0.38 8.06 -2.91 -0.02 -0.40 16 Total: -1.00 -78.44 371.86 1.87 -76.57 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.28 Total: 19.11 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: 5.53 Total: -12.92 kcal Atomic # 7 Polarization: -89.16 SS G_CDS: -5.56 Total: -94.72 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: 0.76 Total: -24.33 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.16 Total: -9.54 kcal Total: -78.44 1.87 -76.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278501541.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.938 kcal (2) G-P(sol) polarization free energy of solvation -78.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds