Wall clock time and date at job start Sat Apr 11 2020 05:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46494 * 109.46852 * 184.66165 * 3 2 1 5 5 C 1.34777 * 120.00040 * 180.02562 * 4 3 2 6 6 O 1.21288 * 119.99621 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.00437 * 180.02562 * 5 4 3 8 8 N 1.46893 * 109.47053 * 179.97438 * 7 5 4 9 9 C 1.46907 * 110.99889 * 179.97438 * 8 7 5 10 10 H 1.09000 * 110.88280 * 38.83540 * 9 8 7 11 11 C 1.55126 * 111.19042 * 274.90624 * 9 8 7 12 12 N 1.47426 * 104.72381 * 279.18792 * 11 9 8 13 13 C 1.34773 * 125.64817 * 155.82002 * 12 11 9 14 14 O 1.21282 * 120.00132 * 359.71319 * 13 12 11 15 15 C 1.50706 * 120.00155 * 179.72016 * 13 12 11 16 16 S 1.80995 * 109.47216 * 179.97438 * 15 13 12 17 17 C 1.76203 * 99.99883 * 179.97438 * 16 15 13 18 18 H 1.07994 * 119.99962 * 359.97438 * 17 16 15 19 19 C 1.38798 * 119.99878 * 179.97438 * 17 16 15 20 20 N 1.31635 * 119.99866 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00004 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47190 * 90.00322 * 21 19 17 23 23 H 1.48503 * 109.47124 * 329.99616 * 21 19 17 24 24 H 1.48505 * 109.46805 * 209.99784 * 21 19 17 25 25 C 1.47019 * 108.70369 * 335.55438 * 12 11 9 26 26 C 1.54328 * 107.27065 * 1.28525 * 25 12 11 27 27 H 1.08994 * 110.72217 * 263.65526 * 26 25 12 28 28 C 1.52996 * 110.71946 * 140.55288 * 26 25 12 29 29 H 4.40632 * 5.51452 * 180.02562 * 4 1 2 30 30 H 1.09003 * 109.46522 * 64.66027 * 3 2 1 31 31 H 1.08994 * 109.46924 * 304.66603 * 3 2 1 32 32 H 0.97000 * 120.00054 * 0.02562 * 4 3 2 33 33 H 1.08995 * 109.47038 * 59.99404 * 7 5 4 34 34 H 1.09000 * 109.46499 * 299.99735 * 7 5 4 35 35 H 1.00901 * 111.00592 * 303.94705 * 8 7 5 36 36 H 1.08998 * 110.49629 * 160.34959 * 11 9 8 37 37 H 1.09002 * 110.34450 * 37.95682 * 11 9 8 38 38 H 1.09004 * 109.46789 * 59.99683 * 15 13 12 39 39 H 1.08993 * 109.46534 * 300.00026 * 15 13 12 40 40 H 0.96996 * 119.99860 * 180.02562 * 20 19 17 41 41 H 1.09005 * 109.88001 * 120.69978 * 25 12 11 42 42 H 1.08999 * 109.88455 * 241.71623 * 25 12 11 43 43 H 1.08996 * 109.47042 * 67.30716 * 28 26 25 44 44 H 1.09000 * 109.47337 * 187.30920 * 28 26 25 45 45 H 1.09006 * 109.47501 * 307.30331 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.3775 0.1123 5 6 4.4586 1.6237 0.1318 6 8 5.2471 0.7052 0.0568 7 6 4.9603 3.0399 0.2478 8 7 6.4292 3.0406 0.2477 9 6 6.9551 4.4077 0.3591 10 1 6.3536 5.0005 1.0482 11 6 7.0402 5.0908 -1.0311 12 7 8.2876 4.5769 -1.6254 13 6 8.5594 4.5080 -2.9436 14 8 7.7380 4.8843 -3.7527 15 6 9.8841 3.9633 -3.4124 16 16 9.9456 4.0000 -5.2210 17 6 11.5532 3.3292 -5.4861 18 1 12.1642 3.0420 -4.6432 19 6 12.0343 3.1699 -6.7783 20 7 13.2355 2.6693 -6.9763 21 14 10.9776 3.6674 -8.2362 22 1 11.2432 5.0878 -8.5783 23 1 9.5436 3.5018 -7.8876 24 1 11.3062 2.8077 -9.4018 25 6 9.1884 4.1579 -0.5417 26 6 8.4457 4.3970 0.7898 27 1 8.7313 5.3550 1.2240 28 6 8.7168 3.2567 1.7731 29 1 -1.0502 -0.0004 0.0002 30 1 3.0094 -0.4390 -0.9288 31 1 3.0095 -0.5837 0.8452 32 1 2.5029 2.1120 0.1725 33 1 4.5972 3.4790 1.1770 34 1 4.5963 3.6246 -0.5970 35 1 6.7912 2.4526 0.9835 36 1 7.0904 6.1741 -0.9216 37 1 6.1839 4.8100 -1.6443 38 1 9.9976 2.9360 -3.0661 39 1 10.6914 4.5742 -3.0086 40 1 13.5718 2.5583 -7.8793 41 1 9.4285 3.0998 -0.6475 42 1 10.1031 4.7501 -0.5701 43 1 9.7644 3.2769 2.0731 44 1 8.0845 3.3774 2.6528 45 1 8.4943 2.3031 1.2941 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327831808.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:31 Heat of formation + Delta-G solvation = -32.091650 kcal Electronic energy + Delta-G solvation = -26361.125839 eV Core-core repulsion = 22505.577326 eV Total energy + Delta-G solvation = -3855.548513 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.30713 -40.68277 -39.09242 -36.59521 -35.64671 -34.68593 -33.69718 -33.31140 -31.67416 -29.78158 -28.51615 -27.84617 -27.28673 -26.17742 -23.47294 -21.68130 -20.86955 -20.64196 -19.78958 -19.52058 -18.13024 -18.02340 -17.54525 -17.34230 -17.13709 -16.83020 -16.48599 -16.16129 -16.03316 -15.50981 -15.15874 -14.90854 -14.75832 -14.54441 -14.35684 -14.27173 -14.09993 -13.89130 -13.47909 -13.37492 -13.28583 -13.02705 -13.02121 -12.95257 -12.64726 -12.11715 -11.88056 -11.86038 -11.83221 -11.60473 -11.50015 -11.18065 -10.97826 -10.87067 -10.56260 -10.18156 -9.66693 -9.32322 -9.01908 -8.52649 -6.23979 0.95954 1.29971 1.37461 1.44996 1.53213 1.56463 1.57844 1.80095 2.12664 2.24654 2.41159 2.67574 2.85065 3.17584 3.31922 3.33732 3.57664 3.77490 3.84635 3.97681 4.16424 4.30697 4.35759 4.38679 4.42323 4.47207 4.50126 4.53784 4.62631 4.64804 4.73227 4.78815 4.92090 4.97064 5.05059 5.19850 5.26869 5.38676 5.45610 5.69660 5.95818 6.09613 6.35173 6.42762 6.50893 6.54495 6.92014 7.11122 7.18563 8.59883 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011075 B = 0.002474 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.520869 B =11316.821086 C =12829.942094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.249 4.249 3 C 0.231 3.769 4 N -0.720 5.720 5 C 0.510 3.490 6 O -0.570 6.570 7 C 0.047 3.953 8 N -0.690 5.690 9 C 0.087 3.913 10 H 0.108 0.892 11 C 0.109 3.891 12 N -0.603 5.603 13 C 0.546 3.454 14 O -0.568 6.568 15 C -0.101 4.101 16 S -0.174 6.174 17 C -0.529 4.529 18 H 0.060 0.940 19 C 0.045 3.955 20 N -0.916 5.916 21 Si 0.916 3.084 22 H -0.259 1.259 23 H -0.239 1.239 24 H -0.257 1.257 25 C 0.098 3.902 26 C -0.087 4.087 27 H 0.119 0.881 28 C -0.147 4.147 29 H 0.254 0.746 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.417 0.583 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.358 0.642 36 H 0.087 0.913 37 H 0.060 0.940 38 H 0.100 0.900 39 H 0.109 0.891 40 H 0.278 0.722 41 H 0.061 0.939 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.843 2.804 26.241 35.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.250 4.250 3 C 0.109 3.891 4 N -0.374 5.374 5 C 0.298 3.702 6 O -0.448 6.448 7 C -0.085 4.085 8 N -0.328 5.328 9 C -0.023 4.023 10 H 0.126 0.874 11 C -0.013 4.013 12 N -0.337 5.337 13 C 0.334 3.666 14 O -0.447 6.447 15 C -0.252 4.252 16 S 0.053 5.947 17 C -0.677 4.677 18 H 0.078 0.922 19 C -0.160 4.160 20 N -0.553 5.553 21 Si 0.737 3.263 22 H -0.184 1.184 23 H -0.163 1.163 24 H -0.181 1.181 25 C -0.024 4.024 26 C -0.106 4.106 27 H 0.137 0.863 28 C -0.205 4.205 29 H 0.270 0.730 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.254 0.746 33 H 0.119 0.881 34 H 0.126 0.874 35 H 0.183 0.817 36 H 0.105 0.895 37 H 0.078 0.922 38 H 0.118 0.882 39 H 0.127 0.873 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.098 0.902 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -24.237 2.590 24.155 34.316 hybrid contribution 0.665 -0.341 0.630 0.978 sum -23.571 2.250 24.785 34.278 Atomic orbital electron populations 1.25868 0.96699 0.95149 0.98672 1.22979 0.94468 1.04711 1.02804 1.17926 0.83948 0.84372 1.02899 1.45874 1.07046 1.09113 1.75345 1.21141 0.81819 0.92253 0.75032 1.90741 1.56228 1.47690 1.50153 1.21871 0.89617 0.92163 1.04849 1.59927 1.05874 1.11042 1.55955 1.22758 0.96130 0.88956 0.94432 0.87442 1.22573 0.86314 0.98233 0.94218 1.48207 1.19135 1.62523 1.03821 1.19542 0.87558 0.77854 0.81658 1.90660 1.49764 1.50454 1.53864 1.23183 0.98589 1.05059 0.98365 1.84640 1.22236 1.84094 1.03746 1.22436 1.00449 1.48240 0.96549 0.92152 1.25579 0.95890 0.93497 1.01055 1.70017 1.17777 1.43983 1.23568 0.85851 0.81258 0.79704 0.79457 1.18383 1.16342 1.18117 1.22361 0.93417 1.00314 0.86319 1.22367 0.92811 1.02132 0.93320 0.86314 1.21776 1.03326 0.96931 0.98460 0.72978 0.90486 0.89246 0.74631 0.88087 0.87390 0.81733 0.89463 0.92170 0.88153 0.87304 0.91305 0.92035 0.90533 0.91001 0.90219 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 19.25 74.32 1.43 0.13 16 2 C -0.25 -3.25 13.46 31.13 0.42 -2.83 16 3 C 0.23 3.51 6.15 84.58 0.52 4.03 16 4 N -0.72 -9.59 5.54 -472.13 -2.61 -12.20 16 5 C 0.51 9.44 7.87 87.66 0.69 10.13 16 6 O -0.57 -16.29 16.20 -3.05 -0.05 -16.34 16 7 C 0.05 0.57 6.02 85.56 0.51 1.09 16 8 N -0.69 -11.52 5.89 -488.02 -2.87 -14.39 16 9 C 0.09 1.09 3.12 46.38 0.14 1.24 16 10 H 0.11 0.59 7.94 -2.39 -0.02 0.57 16 11 C 0.11 2.27 6.57 86.93 0.57 2.84 16 12 N -0.60 -17.01 3.32 -811.34 -2.70 -19.71 16 13 C 0.55 21.51 7.87 87.66 0.69 22.20 16 14 O -0.57 -26.69 16.12 -3.04 -0.05 -26.74 16 15 C -0.10 -4.30 5.35 71.24 0.38 -3.92 16 16 S -0.17 -9.38 18.55 -56.49 -1.05 -10.43 16 17 C -0.53 -32.25 10.04 67.95 0.68 -31.57 16 18 H 0.06 3.88 8.03 -2.91 -0.02 3.86 16 19 C 0.05 2.75 5.50 84.86 0.47 3.21 16 20 N -0.92 -57.22 13.97 21.65 0.30 -56.92 16 21 Si 0.92 46.59 27.74 68.60 1.90 48.49 16 22 H -0.26 -12.75 7.11 99.48 0.71 -12.05 16 23 H -0.24 -12.28 6.74 99.48 0.67 -11.61 16 24 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 25 C 0.10 2.04 6.07 86.73 0.53 2.56 16 26 C -0.09 -1.03 3.46 -9.60 -0.03 -1.06 16 27 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 28 C -0.15 -1.49 8.16 71.98 0.59 -0.90 16 29 H 0.25 0.21 7.80 -4.41 -0.03 0.17 16 30 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.42 3.09 8.45 -92.71 -0.78 2.31 16 33 H 0.10 0.45 8.10 -2.39 -0.02 0.43 16 34 H 0.11 1.28 7.55 -2.39 -0.02 1.26 16 35 H 0.36 5.84 5.60 -89.69 -0.50 5.34 16 36 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.06 1.50 7.42 -2.39 -0.02 1.49 16 38 H 0.10 4.16 8.14 -2.39 -0.02 4.14 16 39 H 0.11 4.26 8.14 -2.40 -0.02 4.24 16 40 H 0.28 15.98 8.31 -92.71 -0.77 15.21 16 41 H 0.06 1.45 7.75 -2.38 -0.02 1.43 16 42 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.08 0.49 8.14 -2.39 -0.02 0.48 16 45 H 0.05 0.77 6.56 -2.38 -0.02 0.75 16 Total: -1.00 -87.54 393.95 0.15 -87.39 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -0.31 Total: 13.71 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 7.59 Total: 7.15 kcal Atomic # 7 Polarization: -95.34 SS G_CDS: -7.88 Total: -103.23 kcal Atomic # 8 Polarization: -42.98 SS G_CDS: -0.10 Total: -43.08 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 1.90 Total: 48.49 kcal Atomic # 16 Polarization: -9.38 SS G_CDS: -1.05 Total: -10.43 kcal Total: -87.54 0.15 -87.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327831808.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.294 kcal (2) G-P(sol) polarization free energy of solvation -87.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds