Wall clock time and date at job start Sat Apr 11 2020 05:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 S 1.81399 * 109.47413 * 347.27283 * 3 2 1 5 5 C 1.81398 * 102.99936 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.46839 * 180.02562 * 5 4 3 7 7 N 1.46498 * 109.47074 * 179.97438 * 6 5 4 8 8 C 1.34779 * 120.00154 * 179.97438 * 7 6 5 9 9 O 1.21348 * 119.99768 * 0.02562 * 8 7 6 10 10 C 1.49450 * 120.00032 * 180.02562 * 8 7 6 11 11 O 1.21356 * 119.99981 * 353.51350 * 10 8 7 12 12 N 1.34774 * 120.00149 * 173.78998 * 10 8 7 13 13 C 1.47074 * 120.88489 * 180.82986 * 12 10 8 14 14 C 1.53700 * 108.27666 * 128.75482 * 13 12 10 15 15 N 1.46902 * 109.25471 * 54.08571 * 14 13 12 16 16 C 1.46896 * 110.99756 * 172.60834 * 15 14 13 17 17 C 1.50697 * 109.47435 * 294.29945 * 16 15 14 18 18 H 1.08007 * 119.99537 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00581 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99931 * 180.02562 * 19 17 16 21 21 Si 1.86793 * 119.99627 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47001 * 90.00553 * 21 19 17 23 23 H 1.48501 * 109.47306 * 210.00124 * 21 19 17 24 24 H 1.48501 * 109.47536 * 330.00180 * 21 19 17 25 25 C 1.46893 * 111.26804 * 296.75687 * 15 14 13 26 26 C 1.47082 * 120.87694 * 1.11057 * 12 10 8 27 27 H 4.62828 * 6.06325 * 179.97438 * 4 1 2 28 28 H 1.08999 * 109.47269 * 227.27344 * 3 2 1 29 29 H 1.08996 * 109.46911 * 107.27481 * 3 2 1 30 30 H 1.08997 * 109.47394 * 60.00338 * 5 4 3 31 31 H 1.08996 * 109.47148 * 299.99990 * 5 4 3 32 32 H 1.09003 * 109.47166 * 60.00596 * 6 5 4 33 33 H 1.09001 * 109.47490 * 300.00017 * 6 5 4 34 34 H 0.97003 * 119.99969 * 0.02562 * 7 6 5 35 35 H 1.08996 * 109.63545 * 248.52272 * 13 12 10 36 36 H 1.09000 * 109.62802 * 9.11122 * 13 12 10 37 37 H 1.09001 * 109.64614 * 294.08434 * 14 13 12 38 38 H 1.09001 * 109.41940 * 173.95105 * 14 13 12 39 39 H 1.09000 * 109.47800 * 54.30221 * 16 15 14 40 40 H 1.09008 * 109.46958 * 174.30245 * 16 15 14 41 41 H 0.97005 * 119.99164 * 179.97438 * 20 19 17 42 42 H 1.09006 * 109.49533 * 303.14448 * 25 15 14 43 43 H 1.08999 * 109.49656 * 183.06504 * 25 15 14 44 44 H 1.08992 * 109.62979 * 350.89963 * 26 12 10 45 45 H 1.09003 * 109.62769 * 111.48017 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 16 3.2515 -1.6673 0.3768 5 6 5.0538 -1.4671 0.3309 6 6 5.7238 -2.8090 0.6333 7 7 7.1794 -2.6475 0.5957 8 6 7.9810 -3.7044 0.8342 9 8 7.4971 -4.7898 1.0796 10 6 9.4659 -3.5396 0.7964 11 8 9.9506 -2.4867 0.4366 12 7 10.2669 -4.5619 1.1566 13 6 11.7302 -4.4151 1.1440 14 6 12.2720 -4.8698 2.5086 15 7 11.7869 -6.2265 2.7948 16 6 12.4202 -6.7677 4.0047 17 6 13.8959 -6.9508 3.7603 18 1 14.3209 -6.6908 2.8021 19 6 14.7035 -7.4504 4.7599 20 7 15.9915 -7.6097 4.5467 21 14 13.9686 -7.8995 6.4174 22 1 13.5360 -9.3199 6.3986 23 1 14.9883 -7.7067 7.4797 24 1 12.7972 -7.0289 6.6919 25 6 10.3227 -6.2558 2.9089 26 6 9.7008 -5.8560 1.5667 27 1 -1.0497 -0.0004 0.0003 28 1 3.0091 0.6981 0.7549 29 1 3.0092 0.3060 -0.9813 30 1 5.3570 -0.7329 1.0773 31 1 5.3564 -1.1253 -0.6588 32 1 5.4207 -3.5429 -0.1134 33 1 5.4213 -3.1514 1.6230 34 1 7.5662 -1.7798 0.3999 35 1 12.1537 -5.0348 0.3537 36 1 11.9920 -3.3707 0.9743 37 1 11.9260 -4.1883 3.2858 38 1 13.3617 -4.8708 2.4838 39 1 12.2724 -6.0750 4.8332 40 1 11.9705 -7.7297 4.2509 41 1 16.5597 -7.9608 5.2501 42 1 10.0038 -5.5550 3.6806 43 1 9.9985 -7.2620 3.1746 44 1 8.6203 -5.7647 1.6764 45 1 9.9329 -6.6116 0.8161 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332645235.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:37 Heat of formation + Delta-G solvation = 20.609608 kcal Electronic energy + Delta-G solvation = -26003.328108 eV Core-core repulsion = 22150.064893 eV Total energy + Delta-G solvation = -3853.263215 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.03793 -38.96775 -37.71741 -36.13312 -34.61141 -34.42458 -32.37734 -31.34075 -30.83569 -29.21566 -28.92947 -26.34201 -24.96860 -23.53589 -22.77031 -21.48708 -20.84782 -19.57261 -18.96853 -17.75991 -17.27104 -16.78035 -16.65961 -16.54008 -16.15572 -15.66571 -15.25160 -15.00734 -14.91882 -14.65530 -14.62000 -14.28900 -14.09740 -13.92191 -13.71387 -13.47243 -12.97110 -12.83840 -12.52820 -12.40195 -12.33650 -11.63946 -11.46950 -11.22764 -11.12040 -10.94947 -10.90809 -10.80042 -10.56661 -10.46418 -10.40517 -9.94747 -9.70676 -9.39563 -9.09232 -8.67140 -8.59723 -8.32168 -7.46083 -6.08683 -4.06589 0.54261 1.25849 1.71510 2.20217 2.24774 2.60058 3.06068 3.26482 3.34067 3.35867 3.39580 3.63491 4.00424 4.16542 4.22292 4.39130 4.50643 4.65675 4.68887 4.73449 5.13067 5.22185 5.23522 5.26790 5.30387 5.36257 5.49028 5.58156 5.68986 5.74906 5.85358 6.16655 6.23861 6.33334 6.40783 6.51031 6.72696 6.81072 6.92175 6.95463 7.26195 7.52772 7.55376 7.80746 7.86538 7.95755 8.60336 8.98621 9.52845 11.04161 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027405 B = 0.001712 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.472932 B =16355.865675 C =16918.165302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.188 4.188 3 C 0.021 3.979 4 S -0.213 6.213 5 C -0.113 4.113 6 C 0.134 3.866 7 N -0.701 5.701 8 C 0.515 3.485 9 O -0.503 6.503 10 C 0.503 3.497 11 O -0.534 6.534 12 N -0.569 5.569 13 C 0.110 3.890 14 C 0.052 3.948 15 N -0.528 5.528 16 C 0.162 3.838 17 C -0.512 4.512 18 H 0.081 0.919 19 C 0.070 3.930 20 N -0.899 5.899 21 Si 0.875 3.125 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.269 1.269 25 C 0.039 3.961 26 C 0.059 3.941 27 H 0.225 0.775 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.414 0.586 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.026 0.974 38 H 0.105 0.895 39 H -0.011 1.011 40 H 0.026 0.974 41 H 0.264 0.736 42 H 0.025 0.975 43 H 0.083 0.917 44 H 0.149 0.851 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.266 15.755 -9.936 33.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.190 4.190 3 C -0.126 4.126 4 S 0.016 5.984 5 C -0.261 4.261 6 C 0.010 3.990 7 N -0.355 5.355 8 C 0.297 3.703 9 O -0.379 6.379 10 C 0.285 3.715 11 O -0.412 6.412 12 N -0.301 5.301 13 C -0.011 4.011 14 C -0.077 4.077 15 N -0.253 5.253 16 C 0.036 3.964 17 C -0.550 4.550 18 H 0.099 0.901 19 C -0.132 4.132 20 N -0.537 5.537 21 Si 0.702 3.298 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.194 1.194 25 C -0.090 4.090 26 C -0.062 4.062 27 H 0.241 0.759 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.250 0.750 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.044 0.956 38 H 0.123 0.877 39 H 0.006 0.994 40 H 0.044 0.956 41 H 0.074 0.926 42 H 0.043 0.957 43 H 0.101 0.899 44 H 0.165 0.835 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -27.559 14.226 -10.033 32.597 hybrid contribution 0.343 1.638 1.348 2.149 sum -27.215 15.864 -8.686 32.677 Atomic orbital electron populations 1.24959 0.95821 0.97881 0.99597 1.21702 0.92986 1.02464 1.01801 1.20141 0.89094 0.97323 1.06008 1.87329 1.02917 1.14287 1.93876 1.23599 0.94859 1.01451 1.06225 1.21040 0.78419 0.95416 1.04117 1.45723 1.06154 1.13030 1.70621 1.20370 0.88303 0.84329 0.77323 1.90396 1.75915 1.24768 1.46869 1.19801 0.87112 0.84519 0.80086 1.90739 1.75990 1.26861 1.47658 1.48197 1.07457 1.12670 1.61738 1.22168 0.77071 1.02584 0.99311 1.22454 1.02289 0.89303 0.93691 1.61934 1.03156 1.20383 1.39806 1.20181 0.96090 0.94083 0.86055 1.21016 0.89824 1.42993 1.01188 0.90050 1.24890 0.94723 0.95221 0.98390 1.69896 1.04171 1.45915 1.33761 0.86867 0.79210 0.79352 0.84346 1.20097 1.21190 1.19352 1.22470 0.90132 1.01018 0.95416 1.23371 1.03295 0.82928 0.96584 0.75869 0.87519 0.87521 0.88680 0.88668 0.89623 0.89630 0.74950 0.89952 0.88974 0.95609 0.87683 0.99371 0.95564 0.92623 0.95661 0.89885 0.83479 0.90574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.88 19.25 29.55 0.57 -0.31 16 2 C -0.19 -1.24 13.35 -37.12 -0.50 -1.73 16 3 C 0.02 0.10 6.42 34.37 0.22 0.32 16 4 S -0.21 -1.40 21.69 -107.50 -2.33 -3.73 16 5 C -0.11 -0.52 6.05 37.16 0.22 -0.30 16 6 C 0.13 0.93 5.68 -4.04 -0.02 0.91 16 7 N -0.70 -5.94 5.55 -60.73 -0.34 -6.28 16 8 C 0.51 6.17 7.81 -11.58 -0.09 6.08 16 9 O -0.50 -6.79 13.03 5.50 0.07 -6.72 16 10 C 0.50 7.13 7.77 -11.59 -0.09 7.04 16 11 O -0.53 -8.24 15.95 5.49 0.09 -8.15 16 12 N -0.57 -8.63 3.00 -172.69 -0.52 -9.15 16 13 C 0.11 1.75 6.62 -3.37 -0.02 1.73 16 14 C 0.05 0.97 5.47 -3.46 -0.02 0.95 16 15 N -0.53 -10.79 4.62 -235.47 -1.09 -11.88 16 16 C 0.16 3.86 3.79 -4.98 -0.02 3.84 16 17 C -0.51 -14.23 8.96 -34.44 -0.31 -14.53 16 18 H 0.08 2.44 7.37 -52.48 -0.39 2.05 16 19 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 20 N -0.90 -27.15 13.96 55.43 0.77 -26.37 16 21 Si 0.87 21.29 27.47 -169.99 -4.67 16.62 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 25 C 0.04 0.66 5.62 -3.70 -0.02 0.64 16 26 C 0.06 0.88 6.35 -3.60 -0.02 0.86 16 27 H 0.22 0.43 7.80 -54.10 -0.42 0.01 16 28 H 0.11 0.36 8.14 -51.92 -0.42 -0.06 16 29 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.41 2.92 7.96 -40.82 -0.32 2.59 16 35 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.09 1.39 7.07 -51.93 -0.37 1.03 16 37 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.11 2.16 6.67 -51.93 -0.35 1.81 16 39 H -0.01 -0.28 7.18 -51.93 -0.37 -0.65 16 40 H 0.03 0.63 7.40 -51.92 -0.38 0.24 16 41 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.08 1.34 7.99 -51.93 -0.41 0.92 16 44 H 0.15 2.10 3.93 -56.51 -0.22 1.88 16 45 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 387.74 15.07 5.84 5.84 Total: -1.00 -33.29 387.74 -9.00 -42.28 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -6.63 Total: 0.15 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: -0.19 Total: 7.38 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: -1.17 Total: -53.67 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: 0.16 Total: -14.87 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Atomic # 16 Polarization: -1.40 SS G_CDS: -2.33 Total: -3.73 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.29 -9.00 -42.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332645235.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.894 kcal (2) G-P(sol) polarization free energy of solvation -33.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds