Wall clock time and date at job start Sat Apr 11 2020 05:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34881 * 117.00019 * 2 1 4 4 O 1.21602 * 120.00072 * 359.97438 * 3 2 1 5 5 C 1.46503 * 119.99966 * 180.02562 * 3 2 1 6 6 C 1.36762 * 126.17766 * 0.02562 * 5 3 2 7 7 N 1.30913 * 113.93079 * 179.97438 * 6 5 3 8 8 C 1.29392 * 117.46843 * 0.02562 * 7 6 5 9 9 C 1.50700 * 124.70632 * 180.02562 * 8 7 6 10 10 N 1.46908 * 109.47096 * 89.97534 * 9 8 7 11 11 C 1.46898 * 110.99771 * 45.69493 * 10 9 8 12 12 C 1.53247 * 109.33623 * 187.25223 * 11 10 9 13 13 H 1.08999 * 109.62501 * 65.88558 * 12 11 10 14 14 C 1.52994 * 109.62509 * 186.45998 * 12 11 10 15 15 N 1.47076 * 108.52262 * 306.17308 * 12 11 10 16 16 C 1.36927 * 120.88219 * 231.20623 * 15 12 11 17 17 H 1.07999 * 120.00537 * 126.45198 * 16 15 12 18 18 C 1.38818 * 120.00095 * 306.44826 * 16 15 12 19 19 N 1.31621 * 119.99630 * 338.09059 * 18 16 15 20 20 Si 1.86801 * 120.00185 * 158.08466 * 18 16 15 21 21 H 1.48500 * 109.47087 * 90.00028 * 20 18 16 22 22 H 1.48497 * 109.47110 * 210.00616 * 20 18 16 23 23 H 1.48507 * 109.46827 * 330.00281 * 20 18 16 24 24 C 1.47083 * 118.23901 * 51.18598 * 15 12 11 25 25 H 1.08999 * 109.63131 * 68.52090 * 24 15 12 26 26 C 1.53001 * 109.63162 * 189.10782 * 24 15 12 27 27 C 1.46897 * 110.99737 * 170.00239 * 10 9 8 28 28 S 1.70924 * 110.58801 * 359.74152 * 8 7 6 29 29 H 1.09005 * 109.47025 * 300.00153 * 1 2 3 30 30 H 1.08997 * 109.47106 * 60.00477 * 1 2 3 31 31 H 1.09000 * 109.46961 * 180.02562 * 1 2 3 32 32 H 1.07998 * 123.03528 * 0.02562 * 6 5 3 33 33 H 1.09003 * 109.47311 * 209.96965 * 9 8 7 34 34 H 1.08994 * 109.47286 * 329.97019 * 9 8 7 35 35 H 1.08998 * 109.49889 * 307.21401 * 11 10 9 36 36 H 1.09003 * 109.49277 * 67.30126 * 11 10 9 37 37 H 1.09002 * 109.46595 * 186.88586 * 14 12 11 38 38 H 1.08987 * 109.47655 * 306.88692 * 14 12 11 39 39 H 1.09003 * 109.47082 * 66.89140 * 14 12 11 40 40 H 0.96999 * 119.99556 * 185.05500 * 19 18 16 41 41 H 1.08994 * 109.47043 * 179.02716 * 26 24 15 42 42 H 1.09002 * 109.46187 * 299.02624 * 26 24 15 43 43 H 1.08996 * 109.47300 * 59.02336 * 26 24 15 44 44 H 1.09007 * 109.49147 * 292.70191 * 27 10 9 45 45 H 1.08997 * 109.49747 * 52.78205 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2018 0.0000 4 8 1.4020 2.2217 -0.0005 5 6 3.5273 1.2785 -0.0006 6 6 4.3913 0.2183 -0.0016 7 7 5.6543 0.5625 -0.0025 8 6 5.9283 1.8271 -0.0017 9 6 7.3207 2.4035 -0.0030 10 7 7.7716 2.5914 -1.3885 11 6 6.7229 3.2204 -2.2026 12 6 7.1602 3.2336 -3.6713 13 1 7.2212 2.2112 -4.0443 14 6 6.1498 4.0281 -4.5011 15 7 8.4825 3.8715 -3.7594 16 6 8.7131 4.8918 -4.6429 17 1 9.1240 5.8271 -4.2926 18 6 8.4188 4.7241 -5.9891 19 7 8.3374 3.5134 -6.4990 20 14 8.1382 6.2166 -7.0769 21 1 9.4302 6.6480 -7.6684 22 1 7.1889 5.8656 -8.1636 23 1 7.5724 7.3226 -6.2634 24 6 9.5505 3.3847 -2.8729 25 1 9.8413 2.3768 -3.1692 26 6 10.7584 4.3195 -2.9619 27 6 9.0191 3.3655 -1.4357 28 16 4.4917 2.7533 -0.0069 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 4.0614 -0.8101 -0.0026 33 1 7.3167 3.3646 0.5112 34 1 7.9973 1.7199 0.5097 35 1 5.7969 2.6540 -2.1038 36 1 6.5623 4.2432 -1.8618 37 1 6.3948 3.9341 -5.5591 38 1 5.1476 3.6382 -4.3242 39 1 6.1875 5.0783 -4.2113 40 1 8.2047 3.3968 -7.4528 41 1 11.5415 3.9661 -2.2912 42 1 11.1341 4.3311 -3.9850 43 1 10.4599 5.3273 -2.6729 44 1 8.8265 4.3863 -1.1055 45 1 9.7583 2.9044 -0.7807 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333718477.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:44 Heat of formation + Delta-G solvation = 5.472614 kcal Electronic energy + Delta-G solvation = -27868.371699 eV Core-core repulsion = 24014.452095 eV Total energy + Delta-G solvation = -3853.919604 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.65497 -39.80908 -38.42685 -36.66875 -35.18051 -32.88190 -31.80899 -31.04371 -28.79166 -27.62764 -27.15220 -25.99906 -25.20655 -23.95704 -22.66728 -21.66918 -20.50109 -19.88751 -19.12745 -18.30757 -17.49062 -16.75247 -16.69061 -16.30468 -15.74087 -15.01604 -14.83756 -14.76887 -14.31833 -14.12731 -14.05694 -13.76174 -13.49117 -13.31126 -12.87072 -12.82514 -12.53012 -12.07492 -11.93514 -11.68239 -11.58341 -11.40095 -11.17206 -11.11651 -11.06836 -10.88119 -10.69326 -10.49003 -10.43595 -10.15580 -9.94242 -9.82178 -9.75613 -9.70396 -9.40879 -9.02086 -8.19037 -7.95565 -6.30589 -5.75615 -3.50148 -0.08871 0.83329 1.45217 2.04968 2.57130 2.78784 3.30601 3.39884 3.42908 3.86008 4.28083 4.42902 4.53185 4.74316 4.80323 4.88747 4.97093 5.21438 5.21640 5.22471 5.29370 5.53677 5.73760 5.79507 5.83872 5.96036 5.97714 6.09533 6.15258 6.26831 6.43069 6.44374 6.57587 6.65835 6.78529 6.91606 7.14630 7.18448 7.35395 7.37551 7.46801 7.49398 7.57531 7.66843 7.89295 8.63665 9.21221 9.75126 10.55358 11.18300 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014981 B = 0.003261 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.553527 B = 8583.454498 C = 9810.094125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.349 6.349 3 C 0.552 3.448 4 O -0.505 6.505 5 C -0.316 4.316 6 C 0.134 3.866 7 N -0.467 5.467 8 C 0.075 3.925 9 C 0.121 3.879 10 N -0.521 5.521 11 C 0.031 3.969 12 C 0.202 3.798 13 H 0.036 0.964 14 C -0.140 4.140 15 N -0.577 5.577 16 C -0.270 4.270 17 H 0.051 0.949 18 C 0.041 3.959 19 N -0.873 5.873 20 Si 0.880 3.120 21 H -0.284 1.284 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.172 3.828 25 H 0.034 0.966 26 C -0.128 4.128 27 C 0.049 3.951 28 S 0.243 5.757 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.105 0.895 32 H 0.191 0.809 33 H 0.055 0.945 34 H 0.107 0.893 35 H 0.055 0.945 36 H 0.032 0.968 37 H 0.085 0.915 38 H 0.022 0.978 39 H 0.049 0.951 40 H 0.256 0.744 41 H 0.035 0.965 42 H 0.066 0.934 43 H 0.048 0.952 44 H 0.032 0.968 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.204 -5.528 15.063 18.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.266 6.266 3 C 0.395 3.605 4 O -0.395 6.395 5 C -0.439 4.439 6 C -0.028 4.028 7 N -0.181 5.181 8 C -0.199 4.199 9 C -0.010 4.010 10 N -0.247 5.247 11 C -0.098 4.098 12 C 0.096 3.904 13 H 0.054 0.946 14 C -0.198 4.198 15 N -0.302 5.302 16 C -0.400 4.400 17 H 0.069 0.931 18 C -0.162 4.162 19 N -0.511 5.511 20 Si 0.708 3.292 21 H -0.210 1.210 22 H -0.213 1.213 23 H -0.199 1.199 24 C 0.066 3.934 25 H 0.052 0.948 26 C -0.186 4.186 27 C -0.080 4.080 28 S 0.503 5.497 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.123 0.877 32 H 0.208 0.792 33 H 0.073 0.927 34 H 0.125 0.875 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.103 0.897 38 H 0.041 0.959 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.054 0.946 42 H 0.085 0.915 43 H 0.067 0.933 44 H 0.050 0.950 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.160 -4.976 14.689 18.012 hybrid contribution -0.979 0.491 -0.379 1.159 sum -10.139 -4.485 14.310 18.102 Atomic orbital electron populations 1.23332 0.75413 1.03973 1.02845 1.86564 1.23830 1.31722 1.84484 1.19348 0.86576 0.81851 0.72722 1.90912 1.66466 1.35721 1.46354 1.24984 0.95730 0.98738 1.24444 1.22729 0.85752 1.00458 0.93860 1.66156 1.19566 1.16065 1.16271 1.27626 1.01389 0.92095 0.98746 1.20924 0.87562 0.99179 0.93345 1.62147 1.05078 1.51220 1.06230 1.23147 0.93002 0.95676 0.98016 1.20251 0.86046 0.95941 0.88203 0.94596 1.21921 0.94910 0.99417 1.03593 1.44025 1.03882 1.39907 1.42385 1.18561 1.43030 0.91778 0.86615 0.93146 1.25567 0.98042 0.95226 0.97357 1.70081 1.49074 1.20373 1.11615 0.86694 0.78151 0.83773 0.80541 1.20997 1.21327 1.19923 1.20539 0.89345 0.96126 0.87392 0.94829 1.21677 0.96191 0.99050 1.01727 1.22800 0.89950 0.94463 1.00797 1.84284 0.96093 1.06661 1.62708 0.91710 0.91563 0.87680 0.79248 0.92678 0.87473 0.92715 0.95023 0.89669 0.95881 0.93157 0.93412 0.94586 0.91487 0.93269 0.95006 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.57 101.05 1.07 1.35 16 2 O -0.35 -3.74 10.37 -40.99 -0.43 -4.16 16 3 C 0.55 7.23 7.92 34.06 0.27 7.50 16 4 O -0.51 -7.73 16.76 -19.34 -0.32 -8.06 16 5 C -0.32 -4.13 6.51 -36.79 -0.24 -4.37 16 6 C 0.13 1.65 11.20 -18.48 -0.21 1.45 16 7 N -0.47 -6.66 10.50 -11.26 -0.12 -6.78 16 8 C 0.08 1.04 5.39 -13.31 -0.07 0.97 16 9 C 0.12 1.64 5.85 -4.97 -0.03 1.61 16 10 N -0.52 -9.01 4.77 -235.75 -1.13 -10.14 16 11 C 0.03 0.59 4.14 -3.70 -0.02 0.58 16 12 C 0.20 4.63 3.21 -67.49 -0.22 4.41 16 13 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 14 C -0.14 -3.18 7.98 37.15 0.30 -2.88 16 15 N -0.58 -13.85 2.81 -157.00 -0.44 -14.29 16 16 C -0.27 -6.97 6.71 -15.06 -0.10 -7.07 16 17 H 0.05 1.32 7.19 -52.49 -0.38 0.95 16 18 C 0.04 1.08 3.21 -17.43 -0.06 1.03 16 19 N -0.87 -24.38 12.12 55.49 0.67 -23.71 16 20 Si 0.88 20.63 29.61 -169.99 -5.03 15.59 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 24 C 0.17 3.59 3.66 -67.48 -0.25 3.35 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 26 C -0.13 -2.43 8.19 37.16 0.30 -2.12 16 27 C 0.05 0.84 4.87 -3.70 -0.02 0.82 16 28 S 0.24 3.20 21.23 -107.50 -2.28 0.92 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.19 1.80 8.06 -52.49 -0.42 1.37 16 33 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 34 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.05 0.99 5.38 -51.93 -0.28 0.72 16 36 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 2.15 5.15 -51.93 -0.27 1.89 16 38 H 0.02 0.45 8.14 -51.94 -0.42 0.03 16 39 H 0.05 1.14 7.69 -51.93 -0.40 0.74 16 40 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 41 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 1.41 7.69 -51.93 -0.40 1.01 16 43 H 0.05 0.92 7.57 -51.93 -0.39 0.53 16 44 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.96 8.11 -51.93 -0.42 0.54 16 LS Contribution 373.55 15.07 5.63 5.63 Total: -1.00 -30.58 373.55 -9.45 -40.03 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -6.74 Total: -1.66 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: 0.74 Total: 6.62 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: -1.01 Total: -54.91 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -0.75 Total: -12.22 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.59 kcal Atomic # 16 Polarization: 3.20 SS G_CDS: -2.28 Total: 0.92 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.58 -9.45 -40.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333718477.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.502 kcal (2) G-P(sol) polarization free energy of solvation -30.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds