Wall clock time and date at job start Sat Apr 11 2020 05:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34881 * 117.00019 * 2 1 4 4 O 1.21602 * 120.00072 * 359.97438 * 3 2 1 5 5 C 1.46503 * 119.99966 * 180.02562 * 3 2 1 6 6 C 1.36762 * 126.17766 * 0.02562 * 5 3 2 7 7 N 1.30913 * 113.93079 * 179.97438 * 6 5 3 8 8 C 1.29392 * 117.46843 * 0.02562 * 7 6 5 9 9 C 1.50700 * 124.70632 * 180.02562 * 8 7 6 10 10 N 1.46908 * 109.47096 * 89.97534 * 9 8 7 11 11 C 1.46898 * 110.99771 * 45.69493 * 10 9 8 12 12 C 1.53247 * 109.33623 * 187.25223 * 11 10 9 13 13 H 1.08999 * 109.62501 * 65.88558 * 12 11 10 14 14 C 1.52994 * 109.62509 * 186.45998 * 12 11 10 15 15 N 1.47076 * 108.52262 * 306.17308 * 12 11 10 16 16 C 1.36927 * 120.88219 * 231.20623 * 15 12 11 17 17 H 1.07999 * 120.00537 * 126.45198 * 16 15 12 18 18 C 1.38818 * 120.00095 * 306.44826 * 16 15 12 19 19 N 1.31621 * 119.99630 * 338.09059 * 18 16 15 20 20 Si 1.86801 * 120.00185 * 158.08466 * 18 16 15 21 21 H 1.48500 * 109.47087 * 90.00028 * 20 18 16 22 22 H 1.48497 * 109.47110 * 210.00616 * 20 18 16 23 23 H 1.48507 * 109.46827 * 330.00281 * 20 18 16 24 24 C 1.47083 * 118.23901 * 51.18598 * 15 12 11 25 25 H 1.08999 * 109.63131 * 68.52090 * 24 15 12 26 26 C 1.53001 * 109.63162 * 189.10782 * 24 15 12 27 27 C 1.46897 * 110.99737 * 170.00239 * 10 9 8 28 28 S 1.70924 * 110.58801 * 359.74152 * 8 7 6 29 29 H 1.09005 * 109.47025 * 300.00153 * 1 2 3 30 30 H 1.08997 * 109.47106 * 60.00477 * 1 2 3 31 31 H 1.09000 * 109.46961 * 180.02562 * 1 2 3 32 32 H 1.07998 * 123.03528 * 0.02562 * 6 5 3 33 33 H 1.09003 * 109.47311 * 209.96965 * 9 8 7 34 34 H 1.08994 * 109.47286 * 329.97019 * 9 8 7 35 35 H 1.08998 * 109.49889 * 307.21401 * 11 10 9 36 36 H 1.09003 * 109.49277 * 67.30126 * 11 10 9 37 37 H 1.09002 * 109.46595 * 186.88586 * 14 12 11 38 38 H 1.08987 * 109.47655 * 306.88692 * 14 12 11 39 39 H 1.09003 * 109.47082 * 66.89140 * 14 12 11 40 40 H 0.96999 * 119.99556 * 185.05500 * 19 18 16 41 41 H 1.08994 * 109.47043 * 179.02716 * 26 24 15 42 42 H 1.09002 * 109.46187 * 299.02624 * 26 24 15 43 43 H 1.08996 * 109.47300 * 59.02336 * 26 24 15 44 44 H 1.09007 * 109.49147 * 292.70191 * 27 10 9 45 45 H 1.08997 * 109.49747 * 52.78205 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2018 0.0000 4 8 1.4020 2.2217 -0.0005 5 6 3.5273 1.2785 -0.0006 6 6 4.3913 0.2183 -0.0016 7 7 5.6543 0.5625 -0.0025 8 6 5.9283 1.8271 -0.0017 9 6 7.3207 2.4035 -0.0030 10 7 7.7716 2.5914 -1.3885 11 6 6.7229 3.2204 -2.2026 12 6 7.1602 3.2336 -3.6713 13 1 7.2212 2.2112 -4.0443 14 6 6.1498 4.0281 -4.5011 15 7 8.4825 3.8715 -3.7594 16 6 8.7131 4.8918 -4.6429 17 1 9.1240 5.8271 -4.2926 18 6 8.4188 4.7241 -5.9891 19 7 8.3374 3.5134 -6.4990 20 14 8.1382 6.2166 -7.0769 21 1 9.4302 6.6480 -7.6684 22 1 7.1889 5.8656 -8.1636 23 1 7.5724 7.3226 -6.2634 24 6 9.5505 3.3847 -2.8729 25 1 9.8413 2.3768 -3.1692 26 6 10.7584 4.3195 -2.9619 27 6 9.0191 3.3655 -1.4357 28 16 4.4917 2.7533 -0.0069 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 4.0614 -0.8101 -0.0026 33 1 7.3167 3.3646 0.5112 34 1 7.9973 1.7199 0.5097 35 1 5.7969 2.6540 -2.1038 36 1 6.5623 4.2432 -1.8618 37 1 6.3948 3.9341 -5.5591 38 1 5.1476 3.6382 -4.3242 39 1 6.1875 5.0783 -4.2113 40 1 8.2047 3.3968 -7.4528 41 1 11.5415 3.9661 -2.2912 42 1 11.1341 4.3311 -3.9850 43 1 10.4599 5.3273 -2.6729 44 1 8.8265 4.3863 -1.1055 45 1 9.7583 2.9044 -0.7807 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333718477.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:43 Heat of formation + Delta-G solvation = -14.517192 kcal Electronic energy + Delta-G solvation = -27869.238522 eV Core-core repulsion = 24014.452095 eV Total energy + Delta-G solvation = -3854.786427 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.61572 -40.88044 -39.89313 -37.60379 -36.75553 -34.53750 -33.47896 -32.34668 -30.03648 -29.08968 -28.10970 -27.55708 -26.74624 -25.38099 -23.72476 -23.00044 -22.10120 -21.10960 -20.72329 -19.32645 -18.50667 -18.11395 -17.64992 -17.60250 -17.22100 -16.53205 -16.26729 -16.12953 -15.87958 -15.39229 -15.15103 -15.03436 -14.76943 -14.63925 -14.23454 -14.12264 -13.60168 -13.35382 -13.32412 -13.20197 -13.07325 -12.75595 -12.66498 -12.63397 -12.39406 -12.29549 -12.17573 -12.09475 -11.93532 -11.90402 -11.61221 -11.53299 -11.28426 -10.79129 -10.67644 -10.18247 -10.07174 -9.28401 -8.29229 -7.71421 -5.53679 -1.10296 -0.15420 0.44249 1.03752 1.42284 1.47623 1.54799 1.71338 1.79280 2.48384 2.85487 2.99474 3.24371 3.57639 3.62676 3.72266 4.05527 4.13121 4.24157 4.27073 4.31655 4.32833 4.39920 4.53180 4.62683 4.67331 4.69393 4.71570 4.84438 4.89159 4.91197 4.91767 4.95810 4.99037 5.10399 5.23989 5.50125 5.57560 5.68454 5.70038 5.82986 6.08968 6.12628 6.40343 6.50149 6.61274 7.26975 7.84340 8.59732 9.16728 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014981 B = 0.003261 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.553527 B = 8583.454498 C = 9810.094125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.347 6.347 3 C 0.554 3.446 4 O -0.534 6.534 5 C -0.326 4.326 6 C 0.139 3.861 7 N -0.484 5.484 8 C 0.068 3.932 9 C 0.123 3.877 10 N -0.539 5.539 11 C 0.051 3.949 12 C 0.200 3.800 13 H -0.006 1.006 14 C -0.132 4.132 15 N -0.593 5.593 16 C -0.266 4.266 17 H 0.048 0.952 18 C 0.001 3.999 19 N -0.909 5.909 20 Si 0.933 3.067 21 H -0.282 1.282 22 H -0.293 1.293 23 H -0.267 1.267 24 C 0.162 3.838 25 H 0.005 0.995 26 C -0.117 4.117 27 C 0.061 3.939 28 S 0.243 5.757 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.140 0.860 32 H 0.217 0.783 33 H 0.080 0.920 34 H 0.125 0.875 35 H 0.061 0.939 36 H 0.035 0.965 37 H 0.056 0.944 38 H 0.044 0.956 39 H 0.047 0.953 40 H 0.251 0.749 41 H 0.073 0.927 42 H 0.035 0.965 43 H 0.049 0.951 44 H 0.038 0.962 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.612 -5.545 17.282 20.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.263 6.263 3 C 0.398 3.602 4 O -0.426 6.426 5 C -0.448 4.448 6 C -0.022 4.022 7 N -0.198 5.198 8 C -0.206 4.206 9 C -0.007 4.007 10 N -0.265 5.265 11 C -0.079 4.079 12 C 0.093 3.907 13 H 0.012 0.988 14 C -0.190 4.190 15 N -0.318 5.318 16 C -0.397 4.397 17 H 0.066 0.934 18 C -0.199 4.199 19 N -0.550 5.550 20 Si 0.761 3.239 21 H -0.208 1.208 22 H -0.219 1.219 23 H -0.191 1.191 24 C 0.056 3.944 25 H 0.022 0.978 26 C -0.175 4.175 27 C -0.068 4.068 28 S 0.503 5.497 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.158 0.842 32 H 0.233 0.767 33 H 0.098 0.902 34 H 0.143 0.857 35 H 0.079 0.921 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.092 0.908 42 H 0.054 0.946 43 H 0.068 0.932 44 H 0.056 0.944 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.565 -4.999 16.939 20.086 hybrid contribution -0.890 0.380 -1.024 1.409 sum -10.455 -4.619 15.915 19.595 Atomic orbital electron populations 1.23686 0.73476 1.06298 1.02880 1.86561 1.25685 1.30292 1.83783 1.19397 0.86568 0.82142 0.72058 1.90896 1.67017 1.36732 1.47923 1.25103 0.96024 0.98833 1.24879 1.23113 0.85017 1.01478 0.92582 1.66205 1.20474 1.16399 1.16762 1.27718 1.01706 0.92236 0.98918 1.21004 0.87741 1.00862 0.91098 1.62017 1.04757 1.51078 1.08601 1.22753 0.93626 0.96150 0.95385 1.20144 0.86052 0.93479 0.90991 0.98810 1.21790 0.96136 0.99327 1.01791 1.44293 1.05145 1.39667 1.42713 1.18711 1.41850 0.92141 0.86966 0.93450 1.26092 0.98319 0.96984 0.98462 1.70194 1.51167 1.22215 1.11447 0.85851 0.77778 0.81333 0.78975 1.20811 1.21915 1.19142 1.20721 0.89541 0.94844 0.89262 0.97763 1.21556 0.96371 0.98836 1.00756 1.22601 0.90610 0.95309 0.98254 1.84253 0.95980 1.06895 1.62547 0.91372 0.91906 0.84223 0.76692 0.90217 0.85743 0.92105 0.94704 0.92519 0.93738 0.93412 0.93957 0.90837 0.94581 0.93169 0.94384 0.88291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.57 113.37 1.20 1.58 16 2 O -0.35 -6.79 10.37 -57.95 -0.60 -7.40 16 3 C 0.55 13.85 7.92 69.98 0.55 14.41 16 4 O -0.53 -15.98 16.76 19.50 0.33 -15.65 16 5 C -0.33 -8.04 6.51 24.08 0.16 -7.88 16 6 C 0.14 3.17 11.20 84.48 0.95 4.11 16 7 N -0.48 -12.85 10.50 -189.53 -1.99 -14.84 16 8 C 0.07 1.73 5.39 88.47 0.48 2.21 16 9 C 0.12 2.98 5.85 85.56 0.50 3.48 16 10 N -0.54 -17.58 4.77 -899.77 -4.29 -21.87 16 11 C 0.05 1.87 4.14 86.39 0.36 2.23 16 12 C 0.20 9.28 3.21 44.96 0.14 9.43 16 13 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 14 C -0.13 -6.07 7.98 71.98 0.57 -5.50 16 15 N -0.59 -28.74 2.81 -650.63 -1.83 -30.57 16 16 C -0.27 -13.91 6.71 84.04 0.56 -13.35 16 17 H 0.05 2.49 7.19 -2.91 -0.02 2.47 16 18 C 0.00 0.06 3.21 84.86 0.27 0.33 16 19 N -0.91 -52.60 12.12 21.65 0.26 -52.33 16 20 Si 0.93 43.04 29.61 68.60 2.03 45.07 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 22 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 24 C 0.16 6.69 3.66 44.96 0.16 6.85 16 25 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 26 C -0.12 -4.31 8.19 71.98 0.59 -3.72 16 27 C 0.06 1.93 4.87 86.39 0.42 2.35 16 28 S 0.24 6.04 21.23 -56.49 -1.20 4.84 16 29 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.14 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.22 3.54 8.06 -2.91 -0.02 3.51 16 33 H 0.08 1.58 8.08 -2.39 -0.02 1.56 16 34 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 35 H 0.06 2.15 5.38 -2.39 -0.01 2.13 16 36 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.06 2.94 5.15 -2.39 -0.01 2.93 16 38 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.05 2.16 7.69 -2.39 -0.02 2.14 16 40 H 0.25 14.14 8.32 -92.71 -0.77 13.37 16 41 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.03 1.51 7.69 -2.39 -0.02 1.50 16 43 H 0.05 1.81 7.57 -2.39 -0.02 1.79 16 44 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 45 H 0.10 2.51 8.11 -2.39 -0.02 2.49 16 Total: -1.00 -68.00 373.55 0.62 -67.38 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: 0.99 Total: 8.82 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: 6.92 Total: 16.54 kcal Atomic # 7 Polarization: -111.76 SS G_CDS: -7.85 Total: -119.61 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.27 Total: -23.04 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: 6.04 SS G_CDS: -1.20 Total: 4.84 kcal Total: -68.00 0.62 -67.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333718477.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.861 kcal (2) G-P(sol) polarization free energy of solvation -67.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds