Wall clock time and date at job start Sat Apr 11 2020 05:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.49804 * 2 1 4 4 C 1.53045 * 109.49429 * 239.93773 * 2 1 3 5 5 C 1.53032 * 109.53809 * 178.65265 * 4 2 1 6 6 H 1.09005 * 109.49588 * 301.41325 * 5 4 2 7 7 C 1.53001 * 109.50065 * 181.31851 * 5 4 2 8 8 C 1.53195 * 109.31456 * 61.36284 * 5 4 2 9 9 N 1.46924 * 108.77273 * 305.36586 * 8 5 4 10 10 S 1.65600 * 120.63155 * 233.58142 * 9 8 5 11 11 O 1.42103 * 106.40296 * 330.53191 * 10 9 8 12 12 O 1.42101 * 106.40566 * 197.61348 * 10 9 8 13 13 N 1.65597 * 107.21986 * 84.07211 * 10 9 8 14 14 C 1.38825 * 119.99715 * 64.33566 * 13 10 9 15 15 C 1.39798 * 119.57957 * 197.65539 * 14 13 10 16 16 C 1.38606 * 119.48797 * 180.02562 * 15 14 13 17 17 C 1.38390 * 118.67782 * 0.27762 * 16 15 14 18 18 C 1.40552 * 119.15176 * 359.47974 * 17 16 15 19 19 C 1.41315 * 119.78657 * 180.23157 * 18 17 16 20 20 H 1.07998 * 120.00000 * 16.02358 * 19 18 17 21 21 C 1.40031 * 119.99978 * 196.02493 * 19 18 17 22 22 N 1.30746 * 120.00011 * 20.73899 * 21 19 18 23 23 Si 1.86793 * 120.00009 * 200.73451 * 21 19 18 24 24 H 1.48510 * 109.47138 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47196 * 120.00012 * 23 21 19 26 26 H 1.48500 * 109.47238 * 240.00233 * 23 21 19 27 27 N 1.31950 * 119.58622 * 17.67792 * 14 13 10 28 28 C 1.46930 * 118.74125 * 53.86224 * 9 8 5 29 29 H 1.09000 * 109.47330 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46835 * 300.06597 * 1 2 3 31 31 H 1.09002 * 109.46889 * 60.06011 * 1 2 3 32 32 H 1.09005 * 109.45977 * 58.62917 * 4 2 1 33 33 H 1.08996 * 109.44556 * 298.66782 * 4 2 1 34 34 H 1.09006 * 109.46817 * 300.15857 * 7 5 4 35 35 H 1.08993 * 109.46803 * 60.15483 * 7 5 4 36 36 H 1.08998 * 109.46992 * 180.16091 * 7 5 4 37 37 H 1.09001 * 109.58797 * 185.58064 * 8 5 4 38 38 H 1.09000 * 109.58443 * 65.15160 * 8 5 4 39 39 H 0.97005 * 119.99945 * 244.34449 * 13 10 9 40 40 H 1.07995 * 120.26069 * 359.97438 * 15 14 13 41 41 H 1.07994 * 120.65916 * 180.02562 * 16 15 14 42 42 H 1.08000 * 120.42128 * 179.72281 * 17 16 15 43 43 H 0.96998 * 120.00297 * 184.65602 * 22 21 19 44 44 H 1.09007 * 109.58505 * 65.92067 * 28 9 8 45 45 H 1.08996 * 109.58587 * 186.35003 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0408 -0.7227 -1.2486 5 6 3.5707 -0.6940 -1.2668 6 1 3.9154 0.3401 -1.2548 7 6 4.0796 -1.3879 -2.5318 8 6 4.1059 -1.4256 -0.0318 9 7 3.5053 -0.8284 1.1688 10 16 4.4595 -0.2842 2.4080 11 8 5.6317 -1.0874 2.3944 12 8 3.6132 -0.1637 3.5431 13 7 4.9405 1.2517 2.0183 14 6 3.9997 2.2664 1.9070 15 6 4.3323 3.4449 1.2325 16 6 3.3916 4.4570 1.1230 17 6 2.1452 4.2699 1.6944 18 6 1.8695 3.0604 2.3552 19 6 0.5995 2.8532 2.9392 20 1 -0.2304 3.4882 2.6665 21 6 0.4170 1.8244 3.8715 22 7 1.4464 1.3264 4.5054 23 14 -1.2971 1.1636 4.2097 24 1 -2.2826 1.8908 3.3698 25 1 -1.3423 -0.2848 3.8850 26 1 -1.6293 1.3601 5.6437 27 7 2.8031 2.1067 2.4397 28 6 2.0418 -0.7288 1.2517 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5149 0.8894 31 1 -0.3633 0.5129 -0.8905 32 1 1.6576 -0.2242 -2.1390 33 1 1.6971 -1.7570 -1.2354 34 1 3.7334 -2.4215 -2.5436 35 1 3.6986 -0.8671 -3.4102 36 1 5.1694 -1.3697 -2.5428 37 1 5.1902 -1.3230 0.0125 38 1 3.8386 -2.4808 -0.0878 39 1 5.8797 1.4422 1.8676 40 1 5.3147 3.5661 0.8007 41 1 3.6281 5.3750 0.6057 42 1 1.3925 5.0417 1.6298 43 1 1.3299 0.5693 5.1004 44 1 1.6096 -1.7285 1.2982 45 1 1.7637 -0.1664 2.1430 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464654513.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:11 Heat of formation + Delta-G solvation = -53.878072 kcal Electronic energy + Delta-G solvation = -30359.505095 eV Core-core repulsion = 26503.011852 eV Total energy + Delta-G solvation = -3856.493243 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -38.72889 -38.38460 -36.49721 -34.99686 -34.59894 -33.26552 -33.12151 -33.02694 -30.52237 -28.81845 -26.59240 -26.39592 -25.52821 -24.03744 -21.84033 -21.38551 -20.57930 -19.79840 -18.54301 -17.88997 -17.43523 -16.53315 -16.15895 -15.39668 -14.83634 -14.80565 -14.59298 -14.46100 -14.05785 -13.85212 -13.46400 -13.14550 -12.96780 -12.73263 -12.61684 -12.29512 -12.17075 -11.91581 -11.78013 -11.55436 -11.48133 -11.41182 -11.36289 -11.06837 -11.02448 -10.86425 -10.73450 -10.64364 -10.59834 -10.47932 -10.27816 -10.10082 -10.01725 -9.85540 -9.04311 -8.56652 -8.22644 -7.67433 -7.23661 -6.57867 -4.46274 1.24820 2.76311 2.95030 3.12940 3.15526 3.19224 3.43442 3.99363 4.13382 4.66159 4.81366 4.94433 5.02259 5.24012 5.28882 5.42541 5.58693 5.59845 5.65635 5.72561 5.76475 5.83423 5.87668 5.94257 6.05875 6.07180 6.11424 6.15251 6.21201 6.30338 6.43625 6.45193 6.53499 6.63093 6.73559 6.74987 6.87996 6.89830 7.02313 7.11371 7.23772 7.53696 7.58000 7.70946 8.07062 8.24940 8.68019 8.89020 9.89180 10.29357 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010583 B = 0.006541 C = 0.006013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.148721 B = 4279.882126 C = 4655.287983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 H 0.081 0.919 4 C -0.104 4.104 5 C -0.108 4.108 6 H 0.075 0.925 7 C -0.144 4.144 8 C 0.130 3.870 9 N -0.996 5.996 10 S 2.773 3.227 11 O -1.006 7.006 12 O -0.907 6.907 13 N -1.047 6.047 14 C 0.390 3.610 15 C -0.342 4.342 16 C -0.033 4.033 17 C -0.298 4.298 18 C 0.297 3.703 19 C -0.433 4.433 20 H 0.085 0.915 21 C 0.077 3.923 22 N -0.673 5.673 23 Si 0.880 3.120 24 H -0.260 1.260 25 H -0.269 1.269 26 H -0.276 1.276 27 N -0.523 5.523 28 C 0.126 3.874 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.415 0.585 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.286 0.714 44 H 0.052 0.948 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.429 -4.915 -9.359 10.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 H 0.099 0.901 4 C -0.141 4.141 5 C -0.128 4.128 6 H 0.094 0.906 7 C -0.202 4.202 8 C 0.004 3.996 9 N -0.835 5.835 10 S 2.781 3.219 11 O -0.990 6.990 12 O -0.890 6.890 13 N -0.797 5.797 14 C 0.151 3.849 15 C -0.370 4.370 16 C -0.058 4.058 17 C -0.321 4.321 18 C 0.173 3.827 19 C -0.463 4.463 20 H 0.103 0.897 21 C -0.153 4.153 22 N -0.291 5.291 23 Si 0.704 3.296 24 H -0.184 1.184 25 H -0.194 1.194 26 H -0.201 1.201 27 N -0.243 5.243 28 C 0.001 3.999 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.248 0.752 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.117 0.883 43 H 0.098 0.902 44 H 0.070 0.930 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.358 -6.366 -7.798 10.158 hybrid contribution 0.007 0.828 -0.833 1.174 sum 1.365 -5.538 -8.631 10.345 Atomic orbital electron populations 1.21736 0.94981 1.00924 1.02471 1.21456 0.95559 1.00681 0.94203 0.90054 1.21598 0.94200 1.00303 0.98019 1.21521 0.96567 1.00473 0.94286 0.90611 1.21772 1.00818 1.00430 0.97138 1.21341 0.97088 0.96914 0.84289 1.58046 1.16882 1.74674 1.33868 1.02531 0.72749 0.72468 0.74108 1.93561 1.50354 1.67589 1.87534 1.93778 1.65876 1.84579 1.44726 1.53601 1.15241 1.26225 1.84599 1.17928 0.89206 0.86299 0.91454 1.20591 1.01052 0.98092 1.17237 1.20651 0.93378 0.96103 0.95637 1.21625 0.97634 0.99996 1.12882 1.17977 0.90737 0.85810 0.88208 1.19447 0.94636 1.13537 1.18665 0.89721 1.25893 0.97620 0.96613 0.95188 1.69844 1.30738 1.15378 1.13136 0.86709 0.84036 0.79855 0.79012 1.18352 1.19424 1.20138 1.67873 1.00102 1.33735 1.22627 1.21724 0.77426 0.99902 1.00887 0.93531 0.91337 0.93017 0.92339 0.92422 0.92729 0.92590 0.92725 0.90429 0.91699 0.75174 0.88944 0.88618 0.88322 0.90240 0.92988 0.85760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.20 37.16 0.34 -1.85 16 2 C -0.10 -1.62 2.88 -90.27 -0.26 -1.88 16 3 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 4 C -0.10 -1.38 4.45 -26.69 -0.12 -1.50 16 5 C -0.11 -1.41 2.87 -90.50 -0.26 -1.67 16 6 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 7 C -0.14 -1.47 9.20 37.16 0.34 -1.12 16 8 C 0.13 1.85 5.64 -3.71 -0.02 1.83 16 9 N -1.00 -17.30 3.34 -113.27 -0.38 -17.68 16 10 S 2.77 55.08 5.85 -107.50 -0.63 54.45 16 11 O -1.01 -20.64 17.06 -57.17 -0.98 -21.62 16 12 O -0.91 -21.33 13.92 -57.17 -0.80 -22.12 16 13 N -1.05 -20.09 5.86 31.15 0.18 -19.91 16 14 C 0.39 8.61 7.39 -155.33 -1.15 7.47 16 15 C -0.34 -7.16 9.98 -38.86 -0.39 -7.55 16 16 C -0.03 -0.70 10.15 -39.39 -0.40 -1.10 16 17 C -0.30 -6.82 9.83 -38.65 -0.38 -7.20 16 18 C 0.30 7.35 6.40 -85.00 -0.54 6.80 16 19 C -0.43 -10.56 9.07 -37.74 -0.34 -10.90 16 20 H 0.08 1.97 7.93 -52.49 -0.42 1.56 16 21 C 0.08 1.83 5.31 -17.34 -0.09 1.74 16 22 N -0.67 -17.08 10.81 55.55 0.60 -16.48 16 23 Si 0.88 17.66 29.61 -169.99 -5.03 12.62 16 24 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 25 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 26 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 27 N -0.52 -12.62 5.40 -10.33 -0.06 -12.67 16 28 C 0.13 2.26 5.50 -3.49 -0.02 2.24 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 1.07 7.30 -51.93 -0.38 0.69 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.42 6.69 8.86 -34.47 -0.31 6.38 16 40 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 41 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 42 H 0.10 2.12 8.06 -52.49 -0.42 1.69 16 43 H 0.29 6.93 8.30 -40.82 -0.34 6.59 16 44 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.12 2.67 6.02 -51.93 -0.31 2.36 16 LS Contribution 371.32 15.07 5.60 5.60 Total: -1.00 -28.93 371.32 -11.67 -40.60 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -6.89 Total: 11.89 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: -3.29 Total: -14.68 kcal Atomic # 7 Polarization: -67.09 SS G_CDS: 0.35 Total: -66.74 kcal Atomic # 8 Polarization: -41.97 SS G_CDS: -1.77 Total: -43.74 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.03 Total: 12.62 kcal Atomic # 16 Polarization: 55.08 SS G_CDS: -0.63 Total: 54.45 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.93 -11.67 -40.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464654513.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.280 kcal (2) G-P(sol) polarization free energy of solvation -28.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds