Wall clock time and date at job start Sat Apr 11 2020 05:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.09002 * 109.49499 * 2 1 4 4 C 1.53047 * 109.49492 * 239.93848 * 2 1 3 5 5 C 1.53037 * 109.53380 * 178.68358 * 4 2 1 6 6 H 1.09007 * 109.52228 * 181.33618 * 5 4 2 7 7 C 1.53008 * 109.49903 * 301.41126 * 5 4 2 8 8 C 1.53187 * 109.31636 * 61.36450 * 5 4 2 9 9 N 1.46923 * 108.77426 * 305.36501 * 8 5 4 10 10 S 1.65601 * 120.62726 * 233.58298 * 9 8 5 11 11 O 1.42096 * 106.40329 * 332.74775 * 10 9 8 12 12 O 1.42109 * 106.40127 * 199.83169 * 10 9 8 13 13 N 1.65600 * 107.21752 * 86.29319 * 10 9 8 14 14 C 1.38818 * 120.00268 * 62.44561 * 13 10 9 15 15 C 1.39792 * 119.58558 * 189.73793 * 14 13 10 16 16 C 1.38598 * 119.49185 * 180.02562 * 15 14 13 17 17 C 1.38390 * 118.68094 * 359.73467 * 16 15 14 18 18 C 1.40558 * 119.14691 * 0.53029 * 17 16 15 19 19 C 1.41312 * 119.78282 * 179.73599 * 18 17 16 20 20 H 1.07997 * 120.00251 * 26.27916 * 19 18 17 21 21 C 1.40037 * 119.99576 * 206.28063 * 19 18 17 22 22 N 1.30743 * 119.99826 * 22.56470 * 21 19 18 23 23 Si 1.86799 * 119.99771 * 202.56088 * 21 19 18 24 24 H 1.48497 * 109.47090 * 89.99973 * 23 21 19 25 25 H 1.48500 * 109.46966 * 329.99898 * 23 21 19 26 26 H 1.48496 * 109.46967 * 210.00238 * 23 21 19 27 27 N 1.31960 * 119.58374 * 9.76448 * 14 13 10 28 28 C 1.46924 * 118.74238 * 53.85999 * 9 8 5 29 29 H 1.08998 * 109.46577 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46958 * 300.06130 * 1 2 3 31 31 H 1.08998 * 109.46853 * 60.05739 * 1 2 3 32 32 H 1.09004 * 109.45852 * 58.66292 * 4 2 1 33 33 H 1.09001 * 109.45645 * 298.70662 * 4 2 1 34 34 H 1.08998 * 109.46600 * 179.84217 * 7 5 4 35 35 H 1.09002 * 109.46781 * 299.84288 * 7 5 4 36 36 H 1.08998 * 109.46845 * 59.84361 * 7 5 4 37 37 H 1.08993 * 109.58912 * 185.57388 * 8 5 4 38 38 H 1.09002 * 109.70475 * 65.22098 * 8 5 4 39 39 H 0.96999 * 119.99699 * 242.44344 * 13 10 9 40 40 H 1.08001 * 120.25275 * 0.02562 * 15 14 13 41 41 H 1.08002 * 120.65961 * 179.97438 * 16 15 14 42 42 H 1.07997 * 120.42844 * 180.26812 * 17 16 15 43 43 H 0.96998 * 120.00037 * 5.90441 * 22 21 19 44 44 H 1.09005 * 109.58688 * 65.92401 * 28 9 8 45 45 H 1.09000 * 109.58955 * 186.35570 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0409 -0.7227 -1.2487 5 6 3.5709 -0.6946 -1.2663 6 1 3.9339 -1.1886 -2.1676 7 6 4.0553 0.7567 -1.2491 8 6 4.1054 -1.4267 -0.0313 9 7 3.5047 -0.8295 1.1692 10 16 4.4589 -0.2860 2.4087 11 8 5.6531 -1.0547 2.3626 12 8 3.6239 -0.2153 3.5565 13 7 4.8909 1.2715 2.0481 14 6 3.9162 2.2532 1.9328 15 6 4.2603 3.5118 1.4310 16 6 3.2858 4.4907 1.3172 17 6 1.9915 4.1872 1.7016 18 6 1.7093 2.9051 2.2038 19 6 0.3934 2.5826 2.6056 20 1 -0.4472 3.0996 2.1670 21 6 0.1795 1.5925 3.5725 22 7 1.1334 1.2799 4.4102 23 14 -1.4688 0.7185 3.6655 24 1 -1.4403 -0.4857 2.7972 25 1 -2.5420 1.6357 3.2048 26 1 -1.7345 0.3110 5.0686 27 7 2.6767 1.9868 2.2986 28 6 2.0412 -0.7293 1.2517 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5148 0.8894 31 1 -0.3633 0.5129 -0.8905 32 1 1.6582 -0.2238 -2.1391 33 1 1.6967 -1.7569 -1.2359 34 1 5.1450 0.7760 -1.2588 35 1 3.6747 1.2771 -2.1280 36 1 3.6911 1.2506 -0.3483 37 1 5.1896 -1.3246 0.0132 38 1 3.8397 -2.4824 -0.0863 39 1 5.8250 1.4977 1.9175 40 1 5.2778 3.7197 1.1344 41 1 3.5308 5.4696 0.9324 42 1 1.2091 4.9273 1.6208 43 1 1.9579 1.7908 4.4189 44 1 1.6085 -1.7288 1.2979 45 1 1.7631 -0.1669 2.1431 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464654517.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:13 Heat of formation + Delta-G solvation = -74.974289 kcal Electronic energy + Delta-G solvation = -31049.435051 eV Core-core repulsion = 27192.027007 eV Total energy + Delta-G solvation = -3857.408044 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.58891 -39.90175 -38.25889 -36.83468 -36.53706 -34.98214 -34.30207 -33.87414 -32.27949 -30.49209 -27.89876 -27.50888 -27.05921 -25.37038 -23.59278 -23.34986 -22.45026 -20.66347 -20.10975 -19.56025 -19.02694 -18.30419 -17.85467 -16.70406 -16.48173 -16.23838 -15.89629 -15.73888 -15.66743 -15.30292 -15.03309 -14.93520 -14.62808 -14.59326 -13.79709 -13.68524 -13.54079 -13.40955 -13.21506 -13.08173 -12.99851 -12.95252 -12.70279 -12.59981 -12.44482 -12.42047 -12.19926 -12.06021 -11.95081 -11.85314 -11.53902 -11.48590 -11.25957 -10.86409 -10.74248 -10.12848 -9.87704 -9.72985 -9.08564 -8.78653 -6.40378 -0.39803 0.94508 1.08640 1.57155 1.67654 1.79442 1.84580 2.44505 2.50871 2.91398 3.47725 3.69456 3.77497 3.83163 3.98682 4.00262 4.16502 4.28070 4.37640 4.41737 4.60534 4.68103 4.73002 4.80885 4.82773 4.85852 4.89524 4.92606 4.96806 4.98477 5.15005 5.17217 5.21180 5.30522 5.36061 5.43324 5.43869 5.64531 5.68006 5.72040 5.76482 5.85022 5.90534 6.02421 6.05480 6.35431 6.86677 7.00768 7.90993 8.36341 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010715 B = 0.007364 C = 0.006682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.421884 B = 3801.178228 C = 4189.200904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 H 0.058 0.942 4 C -0.101 4.101 5 C -0.098 4.098 6 H 0.105 0.895 7 C -0.155 4.155 8 C 0.118 3.882 9 N -0.986 5.986 10 S 2.789 3.211 11 O -1.010 7.010 12 O -0.967 6.967 13 N -1.039 6.039 14 C 0.393 3.607 15 C -0.331 4.331 16 C -0.027 4.027 17 C -0.314 4.314 18 C 0.269 3.731 19 C -0.510 4.510 20 H 0.080 0.920 21 C 0.014 3.986 22 N -0.759 5.759 23 Si 1.085 2.915 24 H -0.255 1.255 25 H -0.257 1.257 26 H -0.285 1.285 27 N -0.579 5.579 28 C 0.123 3.877 29 H 0.061 0.939 30 H 0.046 0.954 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.048 0.952 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.431 0.569 40 H 0.126 0.874 41 H 0.132 0.868 42 H 0.103 0.897 43 H 0.290 0.710 44 H 0.061 0.939 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.502 -3.631 -11.708 12.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 H 0.077 0.923 4 C -0.138 4.138 5 C -0.117 4.117 6 H 0.123 0.877 7 C -0.213 4.213 8 C -0.007 4.007 9 N -0.827 5.827 10 S 2.797 3.203 11 O -0.994 6.994 12 O -0.950 6.950 13 N -0.790 5.790 14 C 0.156 3.844 15 C -0.358 4.358 16 C -0.051 4.051 17 C -0.337 4.337 18 C 0.145 3.855 19 C -0.542 4.542 20 H 0.098 0.902 21 C -0.210 4.210 22 N -0.379 5.379 23 Si 0.904 3.096 24 H -0.179 1.179 25 H -0.181 1.181 26 H -0.211 1.211 27 N -0.302 5.302 28 C -0.002 4.002 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.268 0.732 40 H 0.144 0.856 41 H 0.150 0.850 42 H 0.122 0.878 43 H 0.103 0.897 44 H 0.079 0.921 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.655 -6.218 -9.717 11.654 hybrid contribution 1.629 2.759 -1.063 3.376 sum 3.284 -3.458 -10.780 11.788 Atomic orbital electron populations 1.21799 0.94867 1.01693 1.01980 1.21365 0.95745 0.99531 0.94573 0.92336 1.21562 0.94637 1.00782 0.96849 1.21468 0.96097 0.96231 0.97936 0.87693 1.21962 1.00698 0.96545 1.02052 1.21699 0.97474 0.97918 0.83622 1.57657 1.16508 1.74288 1.34226 1.01805 0.72062 0.72545 0.73878 1.93545 1.48865 1.69088 1.87877 1.93701 1.67934 1.85754 1.47640 1.53540 1.15134 1.26058 1.84231 1.18055 0.87743 0.87280 0.91348 1.20939 1.00756 0.94576 1.19561 1.21077 0.92192 0.98072 0.93764 1.21822 0.97327 0.98048 1.16534 1.18307 0.91417 0.87187 0.88630 1.20478 0.91757 1.20230 1.21706 0.90221 1.27790 1.06174 0.95257 0.91811 1.70300 1.06139 1.33598 1.27912 0.83478 0.71294 0.77275 0.77512 1.17908 1.18123 1.21073 1.67670 0.99271 1.35918 1.27386 1.21734 0.77369 1.00079 1.01028 0.92021 0.93445 0.91929 0.91287 0.90889 0.92520 0.92538 0.93345 0.89772 0.89566 0.73237 0.85629 0.85022 0.87847 0.89675 0.92102 0.88605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.59 9.20 71.99 0.66 -3.93 16 2 C -0.09 -3.02 2.53 -10.56 -0.03 -3.05 16 3 H 0.06 2.26 5.74 -2.39 -0.01 2.25 16 4 C -0.10 -2.47 4.71 30.62 0.14 -2.33 16 5 C -0.10 -2.24 3.21 -10.72 -0.03 -2.28 16 6 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 7 C -0.16 -4.07 8.71 71.98 0.63 -3.44 16 8 C 0.12 3.08 5.76 86.36 0.50 3.58 16 9 N -0.99 -33.83 2.78 -512.31 -1.42 -35.25 16 10 S 2.79 110.42 5.74 -56.49 -0.32 110.09 16 11 O -1.01 -40.32 16.98 -128.00 -2.17 -42.50 16 12 O -0.97 -47.72 15.33 -128.00 -1.96 -49.68 16 13 N -1.04 -37.63 5.78 -55.37 -0.32 -37.95 16 14 C 0.39 16.33 5.74 133.42 0.77 17.10 16 15 C -0.33 -12.58 9.96 22.73 0.23 -12.35 16 16 C -0.03 -1.03 10.15 22.39 0.23 -0.81 16 17 C -0.31 -13.99 9.83 22.87 0.22 -13.77 16 18 C 0.27 13.10 5.94 40.18 0.24 13.34 16 19 C -0.51 -25.17 8.56 23.46 0.20 -24.97 16 20 H 0.08 3.81 7.94 -2.91 -0.02 3.79 16 21 C 0.01 0.71 4.66 85.29 0.40 1.11 16 22 N -0.76 -41.67 12.92 21.84 0.28 -41.39 16 23 Si 1.08 42.66 28.58 68.60 1.96 44.62 16 24 H -0.25 -9.28 7.11 99.48 0.71 -8.57 16 25 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 26 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 27 N -0.58 -27.11 3.64 -186.59 -0.68 -27.79 16 28 C 0.12 4.57 4.96 86.51 0.43 5.00 16 29 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.05 1.74 6.17 -2.39 -0.01 1.73 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.07 1.55 8.14 -2.38 -0.02 1.54 16 33 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.05 1.57 4.08 -2.39 -0.01 1.56 16 37 H 0.08 2.11 7.23 -2.39 -0.02 2.09 16 38 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.43 12.61 8.83 -96.75 -0.85 11.76 16 40 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 41 H 0.13 4.16 8.06 -2.91 -0.02 4.13 16 42 H 0.10 4.42 8.06 -2.91 -0.02 4.39 16 43 H 0.29 17.00 6.90 -92.71 -0.64 16.36 16 44 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 45 H 0.10 4.40 4.99 -2.39 -0.01 4.39 16 Total: -1.00 -63.23 356.31 0.23 -63.00 By element: Atomic # 1 Polarization: 43.35 SS G_CDS: 0.29 Total: 43.64 kcal Atomic # 6 Polarization: -31.38 SS G_CDS: 4.58 Total: -26.80 kcal Atomic # 7 Polarization: -140.25 SS G_CDS: -2.14 Total: -142.39 kcal Atomic # 8 Polarization: -88.04 SS G_CDS: -4.14 Total: -92.17 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 1.96 Total: 44.62 kcal Atomic # 16 Polarization: 110.42 SS G_CDS: -0.32 Total: 110.09 kcal Total: -63.23 0.23 -63.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464654517.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.971 kcal (2) G-P(sol) polarization free energy of solvation -63.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds