Wall clock time and date at job start Sat Apr 11 2020 05:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47399 * 97.54992 * 3 2 1 5 5 C 1.34776 * 120.00731 * 179.97438 * 4 3 2 6 6 O 1.21282 * 119.99524 * 359.97438 * 5 4 3 7 7 C 1.50692 * 120.00400 * 179.97438 * 5 4 3 8 8 N 1.46907 * 109.47226 * 179.97438 * 7 5 4 9 9 C 1.46894 * 111.00049 * 179.97438 * 8 7 5 10 10 H 1.09003 * 110.88981 * 322.57493 * 9 8 7 11 11 C 1.55164 * 111.00285 * 198.65244 * 9 8 7 12 12 C 1.54316 * 102.86122 * 206.23119 * 11 9 8 13 13 H 1.08991 * 109.77722 * 141.88874 * 12 11 9 14 14 C 1.53006 * 109.98486 * 263.04661 * 12 11 9 15 15 N 1.47022 * 107.27524 * 22.52478 * 12 11 9 16 16 C 1.34780 * 125.64445 * 180.97088 * 15 12 11 17 17 O 1.21280 * 120.00423 * 359.71250 * 16 15 12 18 18 C 1.50701 * 119.99795 * 179.71926 * 16 15 12 19 19 S 1.81002 * 109.47156 * 179.97438 * 18 16 15 20 20 C 1.76193 * 100.00049 * 180.02562 * 19 18 16 21 21 H 1.08005 * 120.00026 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00056 * 180.02562 * 20 19 18 23 23 N 1.31623 * 119.99640 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00053 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47361 * 89.99587 * 24 22 20 26 26 H 1.48497 * 109.47059 * 210.00081 * 24 22 20 27 27 H 1.48507 * 109.47001 * 329.99878 * 24 22 20 28 28 C 1.47417 * 108.70718 * 0.70388 * 15 12 11 29 29 H 4.40638 * 5.51416 * 180.02562 * 4 1 2 30 30 H 1.08998 * 109.47661 * 337.54504 * 3 2 1 31 31 H 1.09001 * 109.47126 * 217.54817 * 3 2 1 32 32 H 0.97009 * 119.99707 * 359.97438 * 4 3 2 33 33 H 1.08997 * 109.47182 * 60.00123 * 7 5 4 34 34 H 1.08994 * 109.47456 * 299.99868 * 7 5 4 35 35 H 1.00897 * 110.99637 * 303.95801 * 8 7 5 36 36 H 1.08999 * 110.71826 * 324.78650 * 11 9 8 37 37 H 1.09001 * 110.71871 * 87.88486 * 11 9 8 38 38 H 1.09000 * 109.46764 * 179.32670 * 14 12 11 39 39 H 1.08995 * 109.47173 * 299.33426 * 14 12 11 40 40 H 1.09005 * 109.47008 * 59.33627 * 14 12 11 41 41 H 1.09002 * 109.47060 * 299.99722 * 18 16 15 42 42 H 1.09001 * 109.47380 * 59.99809 * 18 16 15 43 43 H 0.97010 * 119.99946 * 180.02562 * 23 22 20 44 44 H 1.09003 * 110.36538 * 94.93107 * 28 15 12 45 45 H 1.08998 * 110.37116 * 217.14771 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.1823 -1.3692 5 6 4.4593 0.2158 -1.6133 6 8 5.2475 0.0960 -0.6994 7 6 4.9615 0.4021 -3.0218 8 7 6.4306 0.4042 -3.0217 9 6 6.9569 0.5834 -4.3814 10 1 6.3420 0.0540 -5.1091 11 6 8.4382 0.1297 -4.4686 12 6 8.9871 0.9722 -5.6392 13 1 10.0069 1.2881 -5.4198 14 6 8.9597 0.1529 -6.9311 15 7 8.1172 2.1496 -5.7752 16 6 8.2511 3.1227 -6.6982 17 8 9.1540 3.0720 -7.5063 18 6 7.2790 4.2739 -6.7258 19 16 7.7216 5.4052 -8.0676 20 6 6.4596 6.6193 -7.8729 21 1 5.7222 6.5112 -7.0912 22 6 6.4125 7.7141 -8.7249 23 7 7.3108 7.8455 -9.6779 24 14 5.0742 9.0009 -8.5190 25 1 5.5435 10.0588 -7.5886 26 1 4.7615 9.6054 -9.8388 27 1 3.8534 8.3613 -7.9658 28 6 7.0705 2.0864 -4.7391 29 1 -1.0500 0.0002 0.0000 30 1 3.0098 -0.9489 0.3925 31 1 3.0090 0.8156 0.6263 32 1 2.5039 0.2786 -2.1002 33 1 4.5974 1.3513 -3.4149 34 1 4.5991 -0.4133 -3.6477 35 1 6.7911 1.1105 -2.3979 36 1 8.9666 0.3582 -3.5431 37 1 8.5027 -0.9345 -4.6953 38 1 9.3377 0.7595 -7.7541 39 1 9.5860 -0.7314 -6.8139 40 1 7.9357 -0.1529 -7.1458 41 1 6.2704 3.8939 -6.8883 42 1 7.3182 4.8055 -5.7750 43 1 7.2782 8.6109 -10.2731 44 1 7.3681 2.6633 -3.8635 45 1 6.1240 2.4569 -5.1329 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486102905.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:24 Heat of formation + Delta-G solvation = -35.129889 kcal Electronic energy + Delta-G solvation = -26008.954031 eV Core-core repulsion = 22153.273771 eV Total energy + Delta-G solvation = -3855.680261 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.36499 -40.70149 -38.89907 -36.60162 -35.83102 -34.60033 -33.57012 -33.36443 -31.16611 -30.24372 -28.66778 -27.67860 -26.80046 -26.05790 -23.49207 -21.83850 -21.56378 -20.36731 -19.66168 -19.55973 -18.24856 -17.70592 -17.58112 -17.02093 -16.89886 -16.81915 -16.59522 -16.08627 -15.84367 -15.52484 -15.04766 -14.76418 -14.63966 -14.41248 -14.35826 -14.25652 -14.11824 -13.80499 -13.67826 -13.36105 -13.18173 -13.06200 -12.94078 -12.89598 -12.59663 -12.35468 -11.95484 -11.82676 -11.74268 -11.59219 -11.46914 -11.15677 -10.89885 -10.84640 -10.29538 -10.13783 -9.76615 -9.43306 -8.69312 -8.35874 -6.14572 1.22540 1.39631 1.41647 1.44349 1.54889 1.56943 1.61185 1.82643 2.04278 2.25951 2.44438 2.98272 3.09185 3.28022 3.35365 3.52658 3.61454 3.82224 3.88646 4.06014 4.11816 4.21675 4.28752 4.35243 4.41026 4.44212 4.48997 4.52103 4.56040 4.65323 4.72197 4.78148 4.98220 5.00028 5.06021 5.14824 5.30587 5.33200 5.39844 5.51509 5.86837 6.18110 6.24253 6.40196 6.51449 6.57081 7.05088 7.13412 7.20903 8.73340 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008492 B = 0.002506 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3296.404533 B =11168.607618 C =14149.530830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.247 4.247 3 C 0.232 3.768 4 N -0.721 5.721 5 C 0.515 3.485 6 O -0.567 6.567 7 C 0.040 3.960 8 N -0.662 5.662 9 C 0.093 3.907 10 H 0.112 0.888 11 C -0.102 4.102 12 C 0.129 3.871 13 H 0.062 0.938 14 C -0.158 4.158 15 N -0.609 5.609 16 C 0.546 3.454 17 O -0.560 6.560 18 C -0.120 4.120 19 S -0.150 6.150 20 C -0.545 4.545 21 H 0.082 0.918 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.999 3.001 25 H -0.269 1.269 26 H -0.278 1.278 27 H -0.256 1.256 28 C 0.062 3.938 29 H 0.251 0.749 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.416 0.584 33 H 0.085 0.915 34 H 0.128 0.872 35 H 0.352 0.648 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.033 0.967 39 H 0.088 0.912 40 H 0.063 0.937 41 H 0.106 0.894 42 H 0.101 0.899 43 H 0.271 0.729 44 H 0.076 0.924 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.985 -20.270 18.939 30.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.248 4.248 3 C 0.110 3.890 4 N -0.375 5.375 5 C 0.302 3.698 6 O -0.445 6.445 7 C -0.092 4.092 8 N -0.294 5.294 9 C -0.018 4.018 10 H 0.130 0.870 11 C -0.140 4.140 12 C 0.026 3.974 13 H 0.080 0.920 14 C -0.216 4.216 15 N -0.344 5.344 16 C 0.334 3.666 17 O -0.438 6.438 18 C -0.271 4.271 19 S 0.078 5.922 20 C -0.693 4.693 21 H 0.100 0.900 22 C -0.192 4.192 23 N -0.547 5.547 24 Si 0.821 3.179 25 H -0.194 1.194 26 H -0.203 1.203 27 H -0.180 1.180 28 C -0.062 4.062 29 H 0.267 0.733 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.253 0.747 33 H 0.103 0.897 34 H 0.146 0.854 35 H 0.172 0.828 36 H 0.104 0.896 37 H 0.124 0.876 38 H 0.053 0.947 39 H 0.107 0.893 40 H 0.082 0.918 41 H 0.125 0.875 42 H 0.119 0.881 43 H 0.080 0.920 44 H 0.095 0.905 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.948 -20.984 18.226 29.873 hybrid contribution -1.941 2.159 0.253 2.915 sum -12.889 -18.825 18.480 29.360 Atomic orbital electron populations 1.25857 0.96778 0.98866 0.95380 1.23046 0.94597 1.02623 1.04506 1.17956 0.83619 1.02973 0.84487 1.45911 1.07158 1.74575 1.09885 1.20977 0.81759 0.75236 0.91804 1.90730 1.56103 1.50208 1.47477 1.21966 0.89403 1.04916 0.92932 1.60244 1.06020 1.55561 1.07574 1.22718 0.96869 0.91870 0.90335 0.86987 1.22640 0.94400 1.00524 0.96450 1.21747 0.94114 0.84829 0.96759 0.92009 1.22097 1.02756 0.99976 0.96752 1.48397 1.31785 1.22621 1.31644 1.19752 0.84777 0.82329 0.79762 1.90680 1.35318 1.77555 1.40277 1.23309 1.01876 0.97690 1.04207 1.85606 1.42766 1.23695 1.40179 1.23173 1.15546 1.09883 1.20701 0.89959 1.26145 0.99232 0.99986 0.93831 1.70186 1.35918 1.30488 1.18139 0.84943 0.77749 0.77288 0.77932 1.19411 1.20276 1.18001 1.23421 0.91480 1.00127 0.91207 0.73298 0.89429 0.89649 0.74708 0.89680 0.85431 0.82768 0.89613 0.87573 0.94732 0.89343 0.91788 0.87549 0.88053 0.91976 0.90549 0.89653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 19.25 74.32 1.43 0.26 16 2 C -0.25 -2.72 13.46 31.12 0.42 -2.30 16 3 C 0.23 2.74 6.15 84.57 0.52 3.26 16 4 N -0.72 -7.36 5.54 -472.16 -2.61 -9.98 16 5 C 0.51 7.35 7.87 87.65 0.69 8.04 16 6 O -0.57 -13.08 16.20 -3.03 -0.05 -13.13 16 7 C 0.04 0.36 6.04 85.55 0.52 0.88 16 8 N -0.66 -8.45 6.00 -488.40 -2.93 -11.38 16 9 C 0.09 1.20 3.32 46.31 0.15 1.36 16 10 H 0.11 1.22 7.92 -2.39 -0.02 1.20 16 11 C -0.10 -1.47 6.19 31.78 0.20 -1.27 16 12 C 0.13 2.89 3.48 45.34 0.16 3.04 16 13 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 14 C -0.16 -3.61 9.07 71.98 0.65 -2.95 16 15 N -0.61 -16.42 3.08 -788.08 -2.43 -18.85 16 16 C 0.55 20.93 7.65 87.66 0.67 21.60 16 17 O -0.56 -26.60 14.77 -3.03 -0.04 -26.64 16 18 C -0.12 -4.83 5.16 71.24 0.37 -4.46 16 19 S -0.15 -8.36 20.57 -56.49 -1.16 -9.53 16 20 C -0.55 -31.00 9.50 67.96 0.65 -30.36 16 21 H 0.08 4.33 7.80 -2.91 -0.02 4.30 16 22 C 0.01 0.73 5.49 84.86 0.47 1.19 16 23 N -0.91 -55.91 13.22 21.65 0.29 -55.63 16 24 Si 1.00 43.18 29.55 68.60 2.03 45.20 16 25 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 26 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 27 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 28 C 0.06 1.11 6.28 86.86 0.55 1.66 16 29 H 0.25 0.07 7.80 -4.42 -0.03 0.04 16 30 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.42 2.24 8.45 -92.70 -0.78 1.45 16 33 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.13 0.67 8.09 -2.39 -0.02 0.65 16 35 H 0.35 5.09 8.01 -89.70 -0.72 4.37 16 36 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.11 1.21 7.84 -2.39 -0.02 1.19 16 38 H 0.03 1.08 6.75 -2.39 -0.02 1.06 16 39 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.11 3.84 7.84 -2.39 -0.02 3.82 16 42 H 0.10 3.77 8.14 -2.40 -0.02 3.75 16 43 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 44 H 0.08 1.30 7.80 -2.39 -0.02 1.28 16 45 H 0.09 1.41 7.47 -2.39 -0.02 1.39 16 Total: -1.00 -83.66 398.38 0.02 -83.63 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -0.49 Total: 16.33 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: 7.43 Total: -0.05 kcal Atomic # 7 Polarization: -88.15 SS G_CDS: -7.69 Total: -95.83 kcal Atomic # 8 Polarization: -39.67 SS G_CDS: -0.09 Total: -39.77 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.53 kcal Total: -83.66 0.02 -83.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486102905.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.505 kcal (2) G-P(sol) polarization free energy of solvation -83.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds