Wall clock time and date at job start Sat Apr 11 2020 05:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47396 * 2 1 4 4 C 1.50704 * 109.46716 * 119.99465 * 2 1 3 5 5 H 1.07995 * 119.99825 * 119.99766 * 4 2 1 6 6 C 1.37875 * 120.00340 * 300.00397 * 4 2 1 7 7 N 1.31516 * 119.99635 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00362 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47245 * 359.97438 * 8 6 4 10 10 H 1.48508 * 109.47203 * 119.99443 * 8 6 4 11 11 H 1.48498 * 109.47581 * 239.99745 * 8 6 4 12 12 N 1.46494 * 109.47196 * 239.99458 * 2 1 3 13 13 C 1.34773 * 120.00002 * 85.00614 * 12 2 1 14 14 O 1.21548 * 119.99760 * 359.97438 * 13 12 2 15 15 C 1.47863 * 119.99826 * 179.97438 * 13 12 2 16 16 C 1.39620 * 120.11031 * 359.72329 * 15 13 12 17 17 C 1.37982 * 119.99371 * 179.78804 * 16 15 13 18 18 C 1.38249 * 120.22897 * 0.46881 * 17 16 15 19 19 C 1.38964 * 120.22257 * 359.78450 * 18 17 16 20 20 N 1.39879 * 120.00346 * 180.02562 * 19 18 17 21 21 C 1.34772 * 119.99750 * 213.35297 * 20 19 18 22 22 O 1.21566 * 120.00444 * 5.29363 * 21 20 19 23 23 C 1.47816 * 119.99782 * 185.28384 * 21 20 19 24 24 C 1.40036 * 120.55954 * 179.72939 * 23 21 20 25 25 C 1.38346 * 118.28587 * 179.71634 * 24 23 21 26 26 C 1.38356 * 119.30534 * 0.59592 * 25 24 23 27 27 N 1.31921 * 121.07959 * 359.66240 * 26 25 24 28 28 C 1.31687 * 121.88580 * 0.02562 * 27 26 25 29 29 C 1.38654 * 119.99431 * 359.97438 * 19 18 17 30 30 H 1.09005 * 109.46307 * 60.00408 * 1 2 3 31 31 H 1.08997 * 109.47396 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47281 * 300.01076 * 1 2 3 33 33 H 0.97007 * 120.00202 * 179.97438 * 7 6 4 34 34 H 0.97006 * 119.99872 * 265.00494 * 12 2 1 35 35 H 1.08000 * 119.99927 * 359.97438 * 16 15 13 36 36 H 1.08001 * 119.88136 * 180.20619 * 17 16 15 37 37 H 1.07996 * 119.88657 * 179.76702 * 18 17 16 38 38 H 0.96995 * 119.99929 * 33.35873 * 20 19 18 39 39 H 1.08006 * 120.85775 * 359.97432 * 24 23 21 40 40 H 1.08002 * 120.34947 * 180.28021 * 25 24 23 41 41 H 1.08003 * 119.46105 * 179.67903 * 26 25 24 42 42 H 1.08005 * 119.72019 * 179.97438 * 28 27 26 43 43 H 1.08003 * 120.11558 * 180.02562 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1316 6 6 1.6991 -0.2393 2.4828 7 7 0.9434 0.8303 2.6033 8 14 2.3210 -1.1201 4.0081 9 1 3.1452 -2.2875 3.6041 10 1 3.1464 -0.1871 4.8167 11 1 1.1658 -1.5864 4.8162 12 7 2.0184 -0.6907 -1.1960 13 6 2.1472 -0.0184 -2.3570 14 8 1.8578 1.1608 -2.4118 15 6 2.6406 -0.7155 -3.5641 16 6 2.9792 -2.0686 -3.5023 17 6 3.4353 -2.7178 -4.6312 18 6 3.5680 -2.0306 -5.8235 19 6 3.2386 -0.6824 -5.8942 20 7 3.3741 0.0083 -7.1030 21 6 3.7207 1.3107 -7.0997 22 8 4.0093 1.8603 -6.0545 23 6 3.7503 2.0707 -8.3671 24 6 4.1032 3.4259 -8.3766 25 6 4.1212 4.0902 -9.5900 26 6 3.7811 3.4045 -10.7425 27 7 3.4473 2.1288 -10.7026 28 6 3.4213 1.4516 -9.5735 29 6 2.7747 -0.0221 -4.7666 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5140 0.8899 33 1 0.7086 1.1616 3.4843 34 1 2.2490 -1.6319 -1.1524 35 1 2.8813 -2.6078 -2.5717 36 1 3.6935 -3.7653 -4.5822 37 1 3.9290 -2.5433 -6.7028 38 1 3.2185 -0.4501 -7.9435 39 1 4.3589 3.9381 -7.4607 40 1 4.3929 5.1344 -9.6364 41 1 3.7893 3.9220 -11.6905 42 1 3.1424 0.4082 -9.5813 43 1 2.5178 1.0256 -4.8195 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064318360.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:10 Heat of formation + Delta-G solvation = -1.651744 kcal Electronic energy + Delta-G solvation = -27442.597927 eV Core-core repulsion = 23452.925436 eV Total energy + Delta-G solvation = -3989.672491 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.27365 -40.14652 -39.12368 -37.79020 -35.11263 -34.78800 -33.03173 -32.50034 -32.09819 -31.08951 -29.72506 -28.51016 -25.27592 -25.23874 -24.05978 -23.94282 -22.71045 -21.10423 -20.85641 -19.56130 -18.74736 -18.10675 -17.30241 -16.82111 -16.34260 -16.07809 -15.76349 -15.46478 -15.34027 -15.19236 -14.58645 -14.31518 -14.13812 -14.04935 -13.89148 -13.59832 -13.55814 -13.07034 -12.75429 -12.61347 -12.41179 -11.88753 -11.72439 -11.53483 -11.08070 -10.95769 -10.75952 -10.67239 -10.45512 -10.37692 -10.28363 -10.22156 -9.89985 -9.75188 -9.11709 -9.01986 -8.90149 -8.53796 -8.30031 -7.88154 -6.10463 -4.19625 0.10032 0.69944 0.96686 1.31992 2.44495 2.58361 3.25079 3.26497 3.32769 3.35527 3.41729 3.72959 4.02853 4.17588 4.21166 4.27870 4.37887 4.42084 4.49903 4.81073 4.87415 4.89072 5.04284 5.17683 5.21883 5.27920 5.42469 5.49949 5.53538 5.59855 5.87410 6.00973 6.12511 6.21262 6.35819 6.48571 6.84712 6.89610 6.99341 7.00397 7.17362 7.30659 7.47265 7.58717 7.71456 7.73799 7.94028 8.16711 8.67157 8.79916 9.12683 9.47656 10.95646 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020576 B = 0.002143 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.453746 B =13061.788621 C =13933.981453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.050 0.950 4 C -0.532 4.532 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.701 5.701 13 C 0.541 3.459 14 O -0.546 6.546 15 C -0.100 4.100 16 C -0.100 4.100 17 C -0.108 4.108 18 C -0.129 4.129 19 C 0.131 3.869 20 N -0.667 5.667 21 C 0.558 3.442 22 O -0.498 6.498 23 C -0.185 4.185 24 C -0.013 4.013 25 C -0.177 4.177 26 C 0.122 3.878 27 N -0.488 5.488 28 C 0.135 3.865 29 C -0.066 4.066 30 H 0.015 0.985 31 H 0.027 0.973 32 H 0.091 0.909 33 H 0.264 0.736 34 H 0.388 0.612 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.127 0.873 38 H 0.409 0.591 39 H 0.152 0.848 40 H 0.146 0.854 41 H 0.163 0.837 42 H 0.159 0.841 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.080 -2.726 -26.773 27.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.068 0.932 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.349 5.349 13 C 0.326 3.674 14 O -0.425 6.425 15 C -0.104 4.104 16 C -0.120 4.120 17 C -0.126 4.126 18 C -0.149 4.149 19 C 0.037 3.963 20 N -0.313 5.313 21 C 0.346 3.654 22 O -0.372 6.372 23 C -0.191 4.191 24 C -0.039 4.039 25 C -0.197 4.197 26 C -0.034 4.034 27 N -0.196 5.196 28 C -0.024 4.024 29 C -0.086 4.086 30 H 0.034 0.966 31 H 0.046 0.954 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.222 0.778 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.145 0.855 38 H 0.246 0.754 39 H 0.169 0.831 40 H 0.163 0.837 41 H 0.180 0.820 42 H 0.176 0.824 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.757 -1.718 -26.668 27.337 hybrid contribution 0.562 -0.731 1.211 1.522 sum 6.320 -2.449 -25.457 26.344 Atomic orbital electron populations 1.22078 0.98333 0.99156 1.00974 1.18795 0.91116 0.94106 0.79838 0.93203 1.21241 1.32374 1.13208 0.90261 0.91989 1.24899 0.94843 0.94979 0.99085 1.69919 1.35909 1.22434 1.23766 0.86378 0.78568 0.79508 0.82537 1.19730 1.20883 1.20899 1.46476 1.64551 1.13526 1.10324 1.18184 0.79090 0.86817 0.83355 1.90739 1.51173 1.15570 1.85018 1.20218 1.01380 0.94059 0.94756 1.21431 0.97911 0.93598 0.99047 1.20856 0.99877 1.00004 0.91882 1.20954 1.01947 0.92972 0.99054 1.17520 1.00818 0.91730 0.86181 1.43277 1.69153 1.10716 1.08165 1.18176 0.77023 0.81492 0.88748 1.90915 1.45459 1.68501 1.32345 1.20909 1.07459 0.96254 0.94440 1.21842 0.90292 0.92335 0.99461 1.22231 1.02232 1.02224 0.92987 1.23066 0.91504 0.90030 0.98817 1.67711 1.14014 1.08975 1.28910 1.22967 0.92744 0.99787 0.86891 1.21246 0.95520 1.01433 0.90448 0.96596 0.95422 0.89069 0.92629 0.77837 0.85060 0.85040 0.85505 0.75421 0.83075 0.83655 0.81980 0.82436 0.83540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.26 37.16 0.34 -3.40 16 2 C 0.26 6.90 2.56 -69.08 -0.18 6.72 16 3 H 0.05 1.51 7.58 -51.93 -0.39 1.12 16 4 C -0.53 -14.32 8.73 -34.44 -0.30 -14.62 16 5 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -25.20 11.32 55.43 0.63 -24.57 16 8 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 9 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.70 -15.33 5.02 -55.88 -0.28 -15.61 16 13 C 0.54 11.85 7.74 -12.32 -0.10 11.75 16 14 O -0.55 -14.18 16.01 5.32 0.09 -14.10 16 15 C -0.10 -1.74 5.87 -104.99 -0.62 -2.35 16 16 C -0.10 -1.35 9.54 -39.16 -0.37 -1.73 16 17 C -0.11 -1.13 10.02 -39.67 -0.40 -1.53 16 18 C -0.13 -1.28 9.95 -39.31 -0.39 -1.68 16 19 C 0.13 1.63 6.27 -83.76 -0.53 1.11 16 20 N -0.67 -6.48 5.29 -10.76 -0.06 -6.53 16 21 C 0.56 6.63 7.51 -12.35 -0.09 6.54 16 22 O -0.50 -8.19 14.11 5.31 0.07 -8.11 16 23 C -0.19 -1.70 5.89 -104.82 -0.62 -2.32 16 24 C -0.01 -0.11 9.72 -38.87 -0.38 -0.49 16 25 C -0.18 -1.08 10.10 -39.50 -0.40 -1.48 16 26 C 0.12 0.76 11.17 -17.47 -0.20 0.57 16 27 N -0.49 -3.95 10.34 -12.91 -0.13 -4.08 16 28 C 0.13 1.00 10.71 -17.13 -0.18 0.82 16 29 C -0.07 -1.09 8.20 -38.97 -0.32 -1.41 16 30 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 33 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.39 7.23 6.57 -40.82 -0.27 6.96 16 35 H 0.13 1.58 6.40 -52.49 -0.34 1.24 16 36 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 38 H 0.41 2.27 6.90 -40.82 -0.28 1.99 16 39 H 0.15 1.32 7.74 -52.48 -0.41 0.91 16 40 H 0.15 0.49 8.06 -52.49 -0.42 0.07 16 41 H 0.16 0.52 8.06 -52.48 -0.42 0.10 16 42 H 0.16 0.68 6.44 -52.48 -0.34 0.34 16 43 H 0.15 2.81 6.00 -52.48 -0.32 2.50 16 LS Contribution 369.74 15.07 5.57 5.57 Total: -1.00 -36.21 369.74 -8.68 -44.88 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -4.73 Total: 8.55 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: -4.81 Total: -1.81 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: 0.16 Total: -50.79 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: 0.16 Total: -22.21 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.21 -8.68 -44.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318360.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.230 kcal (2) G-P(sol) polarization free energy of solvation -36.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds