Wall clock time and date at job start Sat Apr 11 2020 05:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47396 * 2 1 4 4 C 1.50704 * 109.46716 * 119.99465 * 2 1 3 5 5 H 1.07995 * 119.99825 * 119.99766 * 4 2 1 6 6 C 1.37875 * 120.00340 * 300.00397 * 4 2 1 7 7 N 1.31516 * 119.99635 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00362 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47245 * 359.97438 * 8 6 4 10 10 H 1.48508 * 109.47203 * 119.99443 * 8 6 4 11 11 H 1.48498 * 109.47581 * 239.99745 * 8 6 4 12 12 N 1.46494 * 109.47196 * 239.99458 * 2 1 3 13 13 C 1.34773 * 120.00002 * 85.00614 * 12 2 1 14 14 O 1.21548 * 119.99760 * 359.97438 * 13 12 2 15 15 C 1.47863 * 119.99826 * 179.97438 * 13 12 2 16 16 C 1.39620 * 120.11031 * 359.72329 * 15 13 12 17 17 C 1.37982 * 119.99371 * 179.78804 * 16 15 13 18 18 C 1.38249 * 120.22897 * 0.46881 * 17 16 15 19 19 C 1.38964 * 120.22257 * 359.78450 * 18 17 16 20 20 N 1.39879 * 120.00346 * 180.02562 * 19 18 17 21 21 C 1.34772 * 119.99750 * 213.35297 * 20 19 18 22 22 O 1.21566 * 120.00444 * 5.29363 * 21 20 19 23 23 C 1.47816 * 119.99782 * 185.28384 * 21 20 19 24 24 C 1.40036 * 120.55954 * 179.72939 * 23 21 20 25 25 C 1.38346 * 118.28587 * 179.71634 * 24 23 21 26 26 C 1.38356 * 119.30534 * 0.59592 * 25 24 23 27 27 N 1.31921 * 121.07959 * 359.66240 * 26 25 24 28 28 C 1.31687 * 121.88580 * 0.02562 * 27 26 25 29 29 C 1.38654 * 119.99431 * 359.97438 * 19 18 17 30 30 H 1.09005 * 109.46307 * 60.00408 * 1 2 3 31 31 H 1.08997 * 109.47396 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47281 * 300.01076 * 1 2 3 33 33 H 0.97007 * 120.00202 * 179.97438 * 7 6 4 34 34 H 0.97006 * 119.99872 * 265.00494 * 12 2 1 35 35 H 1.08000 * 119.99927 * 359.97438 * 16 15 13 36 36 H 1.08001 * 119.88136 * 180.20619 * 17 16 15 37 37 H 1.07996 * 119.88657 * 179.76702 * 18 17 16 38 38 H 0.96995 * 119.99929 * 33.35873 * 20 19 18 39 39 H 1.08006 * 120.85775 * 359.97432 * 24 23 21 40 40 H 1.08002 * 120.34947 * 180.28021 * 25 24 23 41 41 H 1.08003 * 119.46105 * 179.67903 * 26 25 24 42 42 H 1.08005 * 119.72019 * 179.97438 * 28 27 26 43 43 H 1.08003 * 120.11558 * 180.02562 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1316 6 6 1.6991 -0.2393 2.4828 7 7 0.9434 0.8303 2.6033 8 14 2.3210 -1.1201 4.0081 9 1 3.1452 -2.2875 3.6041 10 1 3.1464 -0.1871 4.8167 11 1 1.1658 -1.5864 4.8162 12 7 2.0184 -0.6907 -1.1960 13 6 2.1472 -0.0184 -2.3570 14 8 1.8578 1.1608 -2.4118 15 6 2.6406 -0.7155 -3.5641 16 6 2.9792 -2.0686 -3.5023 17 6 3.4353 -2.7178 -4.6312 18 6 3.5680 -2.0306 -5.8235 19 6 3.2386 -0.6824 -5.8942 20 7 3.3741 0.0083 -7.1030 21 6 3.7207 1.3107 -7.0997 22 8 4.0093 1.8603 -6.0545 23 6 3.7503 2.0707 -8.3671 24 6 4.1032 3.4259 -8.3766 25 6 4.1212 4.0902 -9.5900 26 6 3.7811 3.4045 -10.7425 27 7 3.4473 2.1288 -10.7026 28 6 3.4213 1.4516 -9.5735 29 6 2.7747 -0.0221 -4.7666 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5140 0.8899 33 1 0.7086 1.1616 3.4843 34 1 2.2490 -1.6319 -1.1524 35 1 2.8813 -2.6078 -2.5717 36 1 3.6935 -3.7653 -4.5822 37 1 3.9290 -2.5433 -6.7028 38 1 3.2185 -0.4501 -7.9435 39 1 4.3589 3.9381 -7.4607 40 1 4.3929 5.1344 -9.6364 41 1 3.7893 3.9220 -11.6905 42 1 3.1424 0.4082 -9.5813 43 1 2.5178 1.0256 -4.8195 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064318360.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:09 Heat of formation + Delta-G solvation = -28.096384 kcal Electronic energy + Delta-G solvation = -27443.744653 eV Core-core repulsion = 23452.925436 eV Total energy + Delta-G solvation = -3990.819217 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.10878 -41.14217 -40.39637 -39.03926 -36.79368 -36.12215 -34.41075 -33.65266 -32.84353 -32.31044 -31.02628 -30.04889 -27.38345 -26.01191 -25.33299 -24.63368 -23.60128 -22.83239 -21.76496 -21.26845 -19.94550 -19.14966 -18.23402 -17.88459 -17.49120 -17.32873 -16.99766 -16.72532 -16.49785 -16.27929 -15.98815 -15.87335 -15.34722 -14.98716 -14.81407 -14.69558 -14.53109 -14.43225 -14.19429 -13.89432 -13.65744 -13.22273 -13.01913 -12.91650 -12.85061 -12.76043 -12.67290 -12.31144 -12.12293 -11.71823 -11.33490 -11.13769 -11.05370 -10.90892 -10.63289 -10.57156 -10.31806 -10.07492 -9.76980 -9.26783 -8.19472 -6.37796 -0.55129 -0.14545 0.13037 0.30553 1.44146 1.44830 1.57656 1.59195 1.76522 1.96776 2.31515 2.53587 2.74959 2.89603 3.10936 3.20270 3.55997 3.71843 3.77123 3.85100 3.91605 3.94995 4.13266 4.20249 4.35767 4.42094 4.44922 4.61731 4.69157 4.86319 4.87325 4.92749 5.03961 5.05068 5.17313 5.24237 5.33819 5.38477 5.41386 5.50776 5.55786 5.63457 5.85409 5.91914 6.04826 6.21573 6.68855 6.76055 6.87060 6.92152 7.27949 7.45631 8.87611 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020576 B = 0.002143 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.453746 B =13061.788621 C =13933.981453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.268 3.732 3 H -0.006 1.006 4 C -0.545 4.545 5 H 0.077 0.923 6 C 0.011 3.989 7 N -0.919 5.919 8 Si 0.979 3.021 9 H -0.257 1.257 10 H -0.285 1.285 11 H -0.277 1.277 12 N -0.694 5.694 13 C 0.535 3.465 14 O -0.603 6.603 15 C -0.132 4.132 16 C -0.099 4.099 17 C -0.092 4.092 18 C -0.100 4.100 19 C 0.128 3.872 20 N -0.649 5.649 21 C 0.556 3.444 22 O -0.557 6.557 23 C -0.203 4.203 24 C -0.033 4.033 25 C -0.170 4.170 26 C 0.127 3.873 27 N -0.505 5.505 28 C 0.143 3.857 29 C -0.092 4.092 30 H 0.007 0.993 31 H 0.045 0.955 32 H 0.069 0.931 33 H 0.266 0.734 34 H 0.406 0.594 35 H 0.145 0.855 36 H 0.180 0.820 37 H 0.180 0.820 38 H 0.432 0.568 39 H 0.136 0.864 40 H 0.173 0.827 41 H 0.197 0.803 42 H 0.188 0.812 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.500 -6.647 -29.500 31.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.165 3.835 3 H 0.012 0.988 4 C -0.584 4.584 5 H 0.095 0.905 6 C -0.189 4.189 7 N -0.557 5.557 8 Si 0.803 3.197 9 H -0.180 1.180 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.343 5.343 13 C 0.323 3.677 14 O -0.486 6.486 15 C -0.135 4.135 16 C -0.118 4.118 17 C -0.110 4.110 18 C -0.120 4.120 19 C 0.034 3.966 20 N -0.297 5.297 21 C 0.346 3.654 22 O -0.435 6.435 23 C -0.209 4.209 24 C -0.060 4.060 25 C -0.190 4.190 26 C -0.029 4.029 27 N -0.214 5.214 28 C -0.016 4.016 29 C -0.113 4.113 30 H 0.027 0.973 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.243 0.757 35 H 0.163 0.837 36 H 0.198 0.802 37 H 0.197 0.803 38 H 0.273 0.727 39 H 0.154 0.846 40 H 0.191 0.809 41 H 0.213 0.787 42 H 0.205 0.795 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 7.178 -5.715 -29.460 30.856 hybrid contribution 0.147 0.544 1.887 1.969 sum 7.325 -5.172 -27.574 28.995 Atomic orbital electron populations 1.21894 0.98027 0.99721 0.99494 1.18428 0.91377 0.91856 0.81869 0.98829 1.21544 1.32691 1.13638 0.90482 0.90483 1.25892 0.94845 0.95629 1.02562 1.70078 1.37004 1.23981 1.24646 0.85198 0.78099 0.78468 0.77953 1.18034 1.21101 1.20220 1.46173 1.64574 1.14209 1.09301 1.19008 0.77759 0.86330 0.84587 1.90692 1.53631 1.18282 1.86044 1.19819 1.05145 0.95915 0.92662 1.21639 0.97385 0.91597 1.01159 1.21399 0.97312 1.01899 0.90391 1.21540 0.98507 0.91199 1.00772 1.17629 1.00321 0.92946 0.85736 1.43132 1.68035 1.10108 1.08404 1.18670 0.75838 0.81993 0.88924 1.90898 1.48316 1.69726 1.34568 1.20790 1.09737 0.96464 0.93865 1.21959 0.91160 0.92672 1.00169 1.22507 1.01232 1.03413 0.91817 1.23671 0.89565 0.89614 1.00064 1.67822 1.14763 1.09928 1.28855 1.23341 0.91449 1.00976 0.85804 1.21032 0.97959 0.99953 0.92363 0.97347 0.93589 0.91204 0.92492 0.75704 0.83738 0.80247 0.80278 0.72698 0.84618 0.80936 0.78667 0.79492 0.87829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.12 9.26 71.98 0.67 -6.45 16 2 C 0.27 14.85 2.56 44.25 0.11 14.96 16 3 H -0.01 -0.41 7.58 -2.39 -0.02 -0.43 16 4 C -0.55 -29.84 8.73 25.60 0.22 -29.62 16 5 H 0.08 3.89 7.74 -2.91 -0.02 3.87 16 6 C 0.01 0.58 5.30 84.65 0.45 1.03 16 7 N -0.92 -54.30 11.32 21.45 0.24 -54.06 16 8 Si 0.98 42.76 29.54 68.60 2.03 44.78 16 9 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 12 N -0.69 -31.73 5.02 -448.97 -2.25 -33.98 16 13 C 0.53 25.26 7.74 86.79 0.67 25.93 16 14 O -0.60 -34.76 16.01 -3.87 -0.06 -34.82 16 15 C -0.13 -4.75 5.87 -20.10 -0.12 -4.86 16 16 C -0.10 -2.46 9.54 22.54 0.22 -2.24 16 17 C -0.09 -1.47 10.02 22.21 0.22 -1.25 16 18 C -0.10 -1.52 9.95 22.45 0.22 -1.29 16 19 C 0.13 3.03 6.27 38.13 0.24 3.27 16 20 N -0.65 -11.87 5.29 -306.22 -1.62 -13.48 16 21 C 0.56 13.86 7.51 86.78 0.65 14.51 16 22 O -0.56 -20.26 14.11 -3.92 -0.06 -20.32 16 23 C -0.20 -3.78 5.89 -19.99 -0.12 -3.90 16 24 C -0.03 -0.59 9.72 22.73 0.22 -0.37 16 25 C -0.17 -1.87 10.10 22.32 0.23 -1.65 16 26 C 0.13 1.28 11.17 84.71 0.95 2.23 16 27 N -0.51 -7.02 10.34 -194.74 -2.01 -9.03 16 28 C 0.14 1.87 10.71 85.03 0.91 2.78 16 29 C -0.09 -3.23 8.20 22.66 0.19 -3.05 16 30 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 31 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.07 4.04 6.07 -2.39 -0.01 4.03 16 33 H 0.27 14.76 8.31 -92.70 -0.77 13.99 16 34 H 0.41 15.21 6.57 -92.70 -0.61 14.60 16 35 H 0.14 3.12 6.40 -2.91 -0.02 3.10 16 36 H 0.18 1.31 8.06 -2.91 -0.02 1.29 16 37 H 0.18 0.96 8.06 -2.91 -0.02 0.93 16 38 H 0.43 3.47 6.90 -92.71 -0.64 2.83 16 39 H 0.14 2.75 7.74 -2.91 -0.02 2.73 16 40 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 41 H 0.20 0.56 8.06 -2.91 -0.02 0.54 16 42 H 0.19 1.04 6.44 -2.91 -0.02 1.02 16 43 H 0.10 4.53 6.00 -2.91 -0.02 4.51 16 Total: -1.00 -89.08 369.74 2.03 -87.04 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: -0.16 Total: 23.86 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 5.93 Total: 10.02 kcal Atomic # 7 Polarization: -104.92 SS G_CDS: -5.64 Total: -110.56 kcal Atomic # 8 Polarization: -55.02 SS G_CDS: -0.12 Total: -55.14 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -89.08 2.03 -87.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318360.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.948 kcal (2) G-P(sol) polarization free energy of solvation -89.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds