Wall clock time and date at job start Sat Apr 11 2020 05:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 5 5 C 1.36535 * 119.79901 * 60.00036 * 4 2 1 6 6 C 1.35011 * 119.29528 * 179.97438 * 5 4 2 7 7 C 1.41857 * 118.94185 * 0.02562 * 6 5 4 8 8 O 1.22165 * 120.21751 * 179.97438 * 7 6 5 9 9 N 1.33977 * 119.56758 * 359.97438 * 7 6 5 10 10 C 1.31832 * 120.67842 * 359.74653 * 9 7 6 11 11 S 1.76203 * 119.44144 * 180.27419 * 10 9 7 12 12 C 1.80996 * 99.99833 * 0.24356 * 11 10 9 13 13 H 1.09001 * 109.47473 * 304.99612 * 12 11 10 14 14 C 1.53002 * 109.47313 * 65.00086 * 12 11 10 15 15 C 1.50706 * 109.47078 * 185.00089 * 12 11 10 16 16 O 1.21283 * 119.99898 * 339.99881 * 15 12 11 17 17 N 1.34774 * 119.99794 * 160.00059 * 15 12 11 18 18 C 1.46496 * 120.00254 * 359.97438 * 17 15 12 19 19 C 1.46504 * 119.99463 * 179.97438 * 17 15 12 20 20 C 1.50700 * 109.47156 * 90.00025 * 19 17 15 21 21 H 1.08003 * 119.99940 * 359.97438 * 20 19 17 22 22 C 1.37878 * 120.00035 * 179.97438 * 20 19 17 23 23 N 1.31506 * 119.99921 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99886 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47016 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47049 * 120.00123 * 24 22 20 27 27 H 1.48498 * 109.46759 * 239.99977 * 24 22 20 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 32 32 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 33 33 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 35 35 H 1.07998 * 120.35321 * 0.02562 * 5 4 2 36 36 H 1.07999 * 120.52731 * 179.97438 * 6 5 4 37 37 H 1.08997 * 109.47140 * 180.02562 * 14 12 11 38 38 H 1.09001 * 109.46730 * 300.00034 * 14 12 11 39 39 H 1.09005 * 109.47019 * 59.99842 * 14 12 11 40 40 H 1.09001 * 109.46592 * 90.00460 * 18 17 15 41 41 H 1.08999 * 109.46894 * 209.99840 * 18 17 15 42 42 H 1.08998 * 109.47127 * 330.00455 * 18 17 15 43 43 H 1.09000 * 109.46715 * 209.99666 * 19 17 15 44 44 H 1.08998 * 109.47331 * 330.00237 * 19 17 15 45 45 H 0.97008 * 119.99862 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 1.6860 -0.2207 -2.4342 6 6 2.1420 -0.8647 -3.5296 7 6 2.9552 -2.0148 -3.3610 8 8 3.3801 -2.6157 -4.3360 9 7 3.2542 -2.4376 -2.1253 10 6 2.8047 -1.7932 -1.0667 11 16 3.2240 -2.3737 0.5432 12 6 4.2422 -3.8048 0.1060 13 1 3.6771 -4.4657 -0.5513 14 6 5.5070 -3.3305 -0.6125 15 6 4.6255 -4.5501 1.3586 16 8 4.5755 -3.9932 2.4348 17 7 5.0240 -5.8353 1.2826 18 6 5.0839 -6.5081 -0.0173 19 6 5.3971 -6.5596 2.5002 20 6 4.1792 -7.2345 3.0765 21 1 3.2227 -7.1337 2.5851 22 6 4.2859 -7.9807 4.2310 23 7 5.4506 -8.1039 4.8289 24 14 2.7759 -8.8168 4.9456 25 1 1.5972 -8.5245 4.0909 26 1 2.9998 -10.2838 4.9963 27 1 2.5304 -8.3058 6.3182 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.6768 1.9562 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.0656 0.6574 -2.5362 36 1 1.8910 -0.5105 -4.5185 37 1 6.1200 -4.1923 -0.8762 38 1 5.2297 -2.7914 -1.5184 39 1 6.0721 -2.6696 0.0449 40 1 6.0723 -6.3664 -0.4544 41 1 4.8948 -7.5733 0.1158 42 1 4.3292 -6.0852 -0.6804 43 1 6.1493 -7.3110 2.2599 44 1 5.8035 -5.8590 3.2297 45 1 5.5256 -8.6286 5.6414 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000105576990.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:24 Heat of formation + Delta-G solvation = -13.904062 kcal Electronic energy + Delta-G solvation = -27527.638180 eV Core-core repulsion = 23672.878340 eV Total energy + Delta-G solvation = -3854.759840 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.62100 -39.24163 -38.37186 -35.61893 -34.96858 -33.53159 -32.82908 -32.10989 -31.20312 -27.92404 -27.82923 -26.00545 -25.20843 -24.59390 -24.41155 -22.46582 -21.99126 -19.22135 -18.51964 -18.08026 -17.28321 -16.82066 -16.46982 -16.14479 -15.93660 -15.28710 -15.01113 -14.73358 -14.64452 -14.31156 -14.24341 -13.95286 -13.64287 -13.27459 -13.09547 -13.06211 -12.80787 -12.68278 -12.29073 -12.18967 -12.11787 -11.90892 -11.87458 -11.78517 -11.66879 -11.25422 -11.10348 -10.92936 -10.88424 -10.65351 -10.35683 -10.20218 -9.65961 -9.14833 -9.11329 -8.68633 -8.47677 -8.24327 -7.75928 -6.08424 -4.13387 0.68151 0.74562 0.96601 1.71842 2.08804 3.20903 3.27902 3.35486 3.39797 3.71500 3.80455 3.93761 4.03584 4.25017 4.26394 4.41327 4.49393 4.75860 4.84805 4.89388 4.95145 4.99470 5.09545 5.18680 5.22065 5.24268 5.26630 5.36432 5.48952 5.54548 5.65657 5.80100 5.91513 5.95366 6.04818 6.15943 6.21891 6.35005 6.93760 7.35209 7.42811 7.55090 7.87149 8.11496 8.17121 8.24017 8.75889 8.94126 9.51760 10.99786 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014904 B = 0.003095 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.177985 B = 9043.966816 C = 9926.743169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.107 3.893 3 C -0.165 4.165 4 N -0.488 5.488 5 C 0.141 3.859 6 C -0.288 4.288 7 C 0.511 3.489 8 O -0.521 6.521 9 N -0.584 5.584 10 C 0.378 3.622 11 S 0.069 5.931 12 C -0.107 4.107 13 H 0.127 0.873 14 C -0.142 4.142 15 C 0.524 3.476 16 O -0.531 6.531 17 N -0.588 5.588 18 C 0.077 3.923 19 C 0.245 3.755 20 C -0.528 4.528 21 H 0.059 0.941 22 C 0.062 3.938 23 N -0.894 5.894 24 Si 0.899 3.101 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.282 1.282 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.116 0.884 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.170 0.830 36 H 0.152 0.848 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.064 0.936 40 H 0.050 0.950 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.036 0.964 44 H 0.046 0.954 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.846 20.232 -11.580 24.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.004 3.996 3 C -0.223 4.223 4 N -0.188 5.188 5 C 0.014 3.986 6 C -0.318 4.318 7 C 0.300 3.700 8 O -0.400 6.400 9 N -0.331 5.331 10 C 0.004 3.996 11 S 0.303 5.697 12 C -0.239 4.239 13 H 0.145 0.855 14 C -0.201 4.201 15 C 0.308 3.692 16 O -0.410 6.410 17 N -0.319 5.319 18 C -0.067 4.067 19 C 0.126 3.874 20 C -0.567 4.567 21 H 0.077 0.923 22 C -0.140 4.140 23 N -0.533 5.533 24 Si 0.726 3.274 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.208 1.208 28 H 0.084 0.916 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.133 0.867 32 H 0.104 0.896 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.187 0.813 36 H 0.170 0.830 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.097 0.903 42 H 0.080 0.920 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.390 19.850 -10.347 23.906 hybrid contribution -1.053 -0.383 -1.076 1.553 sum -9.442 19.468 -11.423 24.467 Atomic orbital electron populations 1.22232 0.92334 1.03972 1.03771 1.21952 0.96424 0.94767 0.86419 1.22228 1.02779 0.93478 1.03773 1.44766 1.42324 1.23990 1.07712 1.22049 0.95842 0.97807 0.82902 1.23120 1.07123 1.02003 0.99590 1.17754 0.81064 0.84507 0.86681 1.90861 1.52655 1.58089 1.38362 1.69953 1.30883 1.32550 0.99691 1.25895 0.86724 0.84553 1.02429 1.86308 1.58760 1.32144 0.92489 1.23840 1.01399 0.97234 1.01440 0.85491 1.22013 0.94096 1.02717 1.01293 1.19371 0.78995 0.82708 0.88175 1.90705 1.53871 1.67275 1.29101 1.48057 1.63968 1.10148 1.09725 1.21807 1.00616 0.99414 0.84884 1.19388 0.96103 0.91485 0.80378 1.21452 0.95114 1.30616 1.09497 0.92292 1.24932 0.96246 0.96409 0.96463 1.69939 1.23411 1.40612 1.19293 0.86432 0.82875 0.78975 0.79100 1.19757 1.20915 1.20835 0.91561 0.89595 0.91093 0.86664 0.89616 0.91118 0.91564 0.81272 0.82990 0.90767 0.89172 0.91679 0.93107 0.90333 0.92012 0.94585 0.93600 0.92700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.68 9.16 37.16 0.34 -0.34 16 2 C 0.11 0.62 3.16 -67.94 -0.21 0.41 16 3 C -0.16 -0.63 9.16 37.15 0.34 -0.29 16 4 N -0.49 -4.17 2.59 -109.87 -0.28 -4.46 16 5 C 0.14 1.03 9.12 -16.60 -0.15 0.88 16 6 C -0.29 -3.08 10.03 -39.34 -0.39 -3.47 16 7 C 0.51 8.03 7.72 -15.23 -0.12 7.91 16 8 O -0.52 -10.28 17.97 4.77 0.09 -10.19 16 9 N -0.58 -8.76 6.94 -14.70 -0.10 -8.86 16 10 C 0.38 4.60 7.58 -88.33 -0.67 3.93 16 11 S 0.07 0.93 18.44 -107.50 -1.98 -1.05 16 12 C -0.11 -1.69 1.81 -27.88 -0.05 -1.74 16 13 H 0.13 1.96 6.12 -51.92 -0.32 1.65 16 14 C -0.14 -2.02 8.87 37.16 0.33 -1.69 16 15 C 0.52 10.63 6.85 -10.98 -0.08 10.55 16 16 O -0.53 -12.66 15.62 5.56 0.09 -12.57 16 17 N -0.59 -12.32 2.86 -182.95 -0.52 -12.85 16 18 C 0.08 1.25 9.56 59.84 0.57 1.82 16 19 C 0.25 6.30 5.16 -5.19 -0.03 6.27 16 20 C -0.53 -14.74 9.39 -34.44 -0.32 -15.06 16 21 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 22 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 23 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 24 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 25 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 28 H 0.07 0.18 7.26 -51.93 -0.38 -0.19 16 29 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.12 0.81 5.74 -46.84 -0.27 0.54 16 32 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.17 7.26 -51.93 -0.38 -0.21 16 35 H 0.17 0.50 6.91 -52.49 -0.36 0.14 16 36 H 0.15 1.35 8.06 -52.49 -0.42 0.92 16 37 H 0.07 1.01 6.94 -51.93 -0.36 0.65 16 38 H 0.09 1.31 5.66 -51.93 -0.29 1.02 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.05 0.72 7.66 -51.93 -0.40 0.32 16 41 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 42 H 0.06 0.89 5.94 -51.93 -0.31 0.58 16 43 H 0.04 0.93 8.07 -51.93 -0.42 0.52 16 44 H 0.05 1.32 7.42 -51.93 -0.39 0.93 16 45 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 LS Contribution 379.55 15.07 5.72 5.72 Total: -1.00 -36.91 379.55 -8.19 -45.10 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -6.37 Total: -2.76 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: -0.54 Total: 10.83 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: -0.17 Total: -51.61 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: 0.17 Total: -22.77 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -1.98 Total: -1.05 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.91 -8.19 -45.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105576990.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.199 kcal (2) G-P(sol) polarization free energy of solvation -36.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds