Wall clock time and date at job start Sat Apr 11 2020 05:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47001 * 2 1 4 4 C 1.50699 * 109.47267 * 120.00133 * 2 1 3 5 5 O 1.21280 * 119.99991 * 93.60050 * 4 2 1 6 6 N 1.34775 * 120.00125 * 273.60395 * 4 2 1 7 7 C 1.46501 * 119.99855 * 0.02562 * 6 4 2 8 8 C 1.46496 * 120.00276 * 179.97438 * 6 4 2 9 9 C 1.50698 * 109.47199 * 89.99715 * 8 6 4 10 10 H 1.07996 * 119.99935 * 0.02562 * 9 8 6 11 11 C 1.37874 * 120.00188 * 180.02562 * 9 8 6 12 12 N 1.31521 * 119.99938 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00235 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47138 * 359.97438 * 13 11 9 15 15 H 1.48507 * 109.47092 * 119.99693 * 13 11 9 16 16 H 1.48504 * 109.47403 * 239.99609 * 13 11 9 17 17 N 1.46901 * 109.46816 * 239.99868 * 2 1 3 18 18 C 1.47007 * 111.00289 * 310.64207 * 17 2 1 19 19 C 1.53093 * 109.25909 * 177.60724 * 18 17 2 20 20 O 1.43016 * 109.29617 * 56.82353 * 19 18 17 21 21 C 1.43012 * 113.73844 * 301.40247 * 20 19 18 22 22 H 1.09000 * 109.50779 * 298.64396 * 21 20 19 23 23 C 1.50703 * 109.51022 * 178.54951 * 21 20 19 24 24 N 1.29021 * 124.91713 * 315.05285 * 23 21 20 25 25 C 1.31782 * 117.12655 * 180.02562 * 24 23 21 26 26 C 1.33643 * 114.49766 * 359.97438 * 25 24 23 27 27 S 1.70981 * 124.91473 * 135.08285 * 23 21 20 28 28 C 1.47012 * 110.99750 * 187.00514 * 17 2 1 29 29 H 1.09003 * 109.47562 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.47351 * 299.99953 * 1 2 3 31 31 H 1.09000 * 109.47665 * 59.99875 * 1 2 3 32 32 H 1.08991 * 109.47268 * 90.00045 * 7 6 4 33 33 H 1.08998 * 109.46964 * 210.00301 * 7 6 4 34 34 H 1.08998 * 109.47122 * 329.99801 * 7 6 4 35 35 H 1.08997 * 109.47611 * 210.00589 * 8 6 4 36 36 H 1.09005 * 109.47242 * 329.99801 * 8 6 4 37 37 H 0.96996 * 119.99955 * 180.02562 * 12 11 9 38 38 H 1.09001 * 109.50715 * 297.54169 * 18 17 2 39 39 H 1.09001 * 109.51058 * 57.67296 * 18 17 2 40 40 H 1.08999 * 109.50848 * 176.78364 * 19 18 17 41 41 H 1.09003 * 109.50914 * 296.87080 * 19 18 17 42 42 H 1.07997 * 122.75196 * 179.97438 * 25 24 23 43 43 H 1.08001 * 126.03746 * 179.97438 * 26 25 24 44 44 H 1.08988 * 109.50693 * 62.45861 * 28 17 2 45 45 H 1.09001 * 109.50592 * 302.32345 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.2967 -1.8931 1.1823 6 7 2.1878 -0.0316 2.3843 7 6 1.8679 1.3969 2.4425 8 6 2.6756 -0.7223 3.5806 9 6 4.1800 -0.6460 3.6263 10 1 4.7188 -0.1339 2.8429 11 6 4.8685 -1.2300 4.6683 12 7 4.2124 -1.8533 5.6227 13 14 6.7332 -1.1349 4.7254 14 1 7.2270 -0.3842 3.5431 15 1 7.1555 -0.4377 5.9668 16 1 7.2996 -2.5076 4.7116 17 7 2.0196 -0.6925 -1.1995 18 6 1.3524 -1.9917 -1.3670 19 6 1.8472 -2.6509 -2.6571 20 8 3.2710 -2.7757 -2.6081 21 6 3.9530 -1.5293 -2.4451 22 1 3.7334 -0.8807 -3.2932 23 6 5.4381 -1.7742 -2.3700 24 7 5.9994 -2.6998 -1.6680 25 6 7.3142 -2.7756 -1.7149 26 6 7.8942 -1.8634 -2.5006 27 16 6.6232 -0.8651 -3.2022 28 6 3.4795 -0.8588 -1.1527 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 0.8218 1.5239 2.7209 33 1 2.5028 1.8815 3.1843 34 1 2.0413 1.8482 1.4656 35 1 2.2605 -0.2470 4.4693 36 1 2.3656 -1.7668 3.5489 37 1 4.6967 -2.2638 6.3559 38 1 1.5866 -2.6334 -0.5175 39 1 0.2742 -1.8425 -1.4248 40 1 1.3983 -3.6392 -2.7563 41 1 1.5651 -2.0356 -3.5116 42 1 7.8768 -3.5144 -1.1635 43 1 8.9548 -1.7562 -2.6740 44 1 3.7477 -1.4822 -0.2999 45 1 3.9541 0.1175 -1.0543 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195521580.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:44 Heat of formation + Delta-G solvation = -3.189443 kcal Electronic energy + Delta-G solvation = -28721.147541 eV Core-core repulsion = 24866.852322 eV Total energy + Delta-G solvation = -3854.295219 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.49559 -39.56348 -38.37090 -35.73166 -34.74521 -32.69484 -32.50018 -30.96718 -29.55177 -27.84041 -27.15214 -25.89865 -24.82325 -24.26096 -23.15805 -21.96258 -20.71310 -19.56556 -18.52710 -18.03369 -16.76893 -16.47608 -16.45879 -16.20301 -15.56699 -15.30059 -14.98808 -14.67511 -14.56727 -14.25608 -14.14453 -13.89891 -13.59326 -13.32262 -13.13486 -12.62711 -12.37545 -12.29348 -12.07511 -11.93344 -11.71927 -11.65518 -11.56977 -11.23439 -11.03180 -10.90579 -10.75230 -10.62577 -10.55002 -10.17865 -9.74405 -9.61694 -9.56708 -9.51704 -9.37020 -8.91239 -8.44750 -7.83043 -7.67016 -6.05605 -4.10030 0.64446 1.24328 1.66493 2.86846 3.28182 3.30403 3.36487 3.40772 3.77412 3.87815 3.92575 4.28393 4.43914 4.88258 4.92971 5.01604 5.06947 5.12301 5.13753 5.21841 5.28421 5.29456 5.42431 5.47508 5.53138 5.56505 5.64005 5.71128 5.84997 5.88818 5.94209 6.08569 6.12916 6.20655 6.30287 6.43371 6.90007 7.00493 7.04658 7.17302 7.42038 7.51299 7.83263 7.90480 8.21677 8.36952 8.87781 9.04490 9.55132 11.02621 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008377 B = 0.005227 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3341.839841 B = 5355.766921 C = 7765.753248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.057 3.943 3 H 0.103 0.897 4 C 0.477 3.523 5 O -0.534 6.534 6 N -0.598 5.598 7 C 0.080 3.920 8 C 0.244 3.756 9 C -0.523 4.523 10 H 0.055 0.945 11 C 0.062 3.938 12 N -0.894 5.894 13 Si 0.896 3.104 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.282 1.282 17 N -0.508 5.508 18 C -0.010 4.010 19 C 0.069 3.931 20 O -0.362 6.362 21 C 0.182 3.818 22 H 0.081 0.919 23 C 0.055 3.945 24 N -0.439 5.439 25 C 0.043 3.957 26 C -0.259 4.259 27 S 0.121 5.879 28 C 0.015 3.985 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.031 0.969 36 H 0.043 0.957 37 H 0.263 0.737 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.054 0.946 42 H 0.178 0.822 43 H 0.179 0.821 44 H 0.087 0.913 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.479 6.012 -18.580 19.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.055 4.055 3 H 0.120 0.880 4 C 0.262 3.738 5 O -0.412 6.412 6 N -0.330 5.330 7 C -0.064 4.064 8 C 0.125 3.875 9 C -0.562 4.562 10 H 0.073 0.927 11 C -0.140 4.140 12 N -0.533 5.533 13 Si 0.724 3.276 14 H -0.199 1.199 15 H -0.209 1.209 16 H -0.208 1.208 17 N -0.232 5.232 18 C -0.137 4.137 19 C -0.008 4.008 20 O -0.280 6.280 21 C 0.120 3.880 22 H 0.099 0.901 23 C -0.224 4.224 24 N -0.153 5.153 25 C -0.108 4.108 26 C -0.398 4.398 27 S 0.375 5.625 28 C -0.115 4.115 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.117 0.883 41 H 0.072 0.928 42 H 0.195 0.805 43 H 0.196 0.804 44 H 0.105 0.895 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.684 5.889 -19.209 20.270 hybrid contribution 1.814 -0.730 1.537 2.487 sum -0.870 5.159 -17.673 18.431 Atomic orbital electron populations 1.21803 0.92234 1.03045 1.02673 1.21959 0.97154 0.98964 0.87375 0.87961 1.21410 0.79221 0.88027 0.85120 1.90627 1.51281 1.15618 1.83685 1.48294 1.63286 1.09230 1.12169 1.21712 0.99977 0.82714 1.01963 1.19288 0.94270 0.93571 0.80373 1.21408 0.91567 1.35346 1.07841 0.92653 1.24917 0.98645 0.94977 0.95469 1.69938 1.35581 1.36110 1.11698 0.86474 0.85496 0.77945 0.77728 1.19882 1.20920 1.20812 1.62773 1.04549 1.20938 1.34955 1.23195 0.99228 0.91369 0.99955 1.22692 0.80459 1.01174 0.96509 1.88092 1.18415 1.27765 1.93776 1.20278 0.83392 0.86579 0.97702 0.90093 1.26679 1.00237 0.96768 0.98741 1.66218 1.10216 1.19977 1.18876 1.21964 0.88981 1.00268 0.99606 1.27129 1.04172 1.01809 1.06719 1.83776 0.98183 1.34875 1.45708 1.22896 0.88610 1.01548 0.98431 0.91690 0.91537 0.90987 0.93562 0.90751 0.92315 0.95091 0.93932 0.92776 0.89294 0.89648 0.88277 0.92800 0.80538 0.80404 0.89480 0.90229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.57 37.16 0.32 -1.34 16 2 C 0.06 0.86 2.32 -68.87 -0.16 0.70 16 3 H 0.10 1.37 6.00 -51.93 -0.31 1.06 16 4 C 0.48 9.72 5.88 -10.99 -0.06 9.65 16 5 O -0.53 -13.18 11.87 5.56 0.07 -13.11 16 6 N -0.60 -12.57 2.86 -182.96 -0.52 -13.09 16 7 C 0.08 1.25 10.08 59.85 0.60 1.85 16 8 C 0.24 6.45 5.16 -5.20 -0.03 6.42 16 9 C -0.52 -15.04 9.39 -34.44 -0.32 -15.36 16 10 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 11 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 12 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 13 Si 0.90 22.40 29.54 -169.99 -5.02 17.38 16 14 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 16 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 17 N -0.51 -7.57 4.81 -227.73 -1.09 -8.67 16 18 C -0.01 -0.15 4.76 -3.72 -0.02 -0.16 16 19 C 0.07 0.90 7.01 37.21 0.26 1.16 16 20 O -0.36 -5.97 10.44 -35.23 -0.37 -6.33 16 21 C 0.18 2.77 3.31 -27.83 -0.09 2.68 16 22 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 23 C 0.05 0.86 6.29 -13.46 -0.08 0.78 16 24 N -0.44 -7.86 10.52 -11.86 -0.12 -7.99 16 25 C 0.04 0.62 11.35 -19.18 -0.22 0.41 16 26 C -0.26 -3.02 11.37 29.12 0.33 -2.69 16 27 S 0.12 1.42 23.18 -107.50 -2.49 -1.07 16 28 C 0.01 0.25 4.42 -3.71 -0.02 0.23 16 29 H 0.06 0.82 6.27 -51.93 -0.33 0.49 16 30 H 0.07 0.74 7.96 -51.92 -0.41 0.33 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 34 H 0.06 0.74 5.83 -51.93 -0.30 0.44 16 35 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 36 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.09 1.69 5.59 -51.93 -0.29 1.40 16 39 H 0.09 1.04 6.05 -51.93 -0.31 0.73 16 40 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.18 2.16 8.06 -52.49 -0.42 1.74 16 43 H 0.18 1.46 8.06 -52.49 -0.42 1.04 16 44 H 0.09 1.93 5.87 -51.94 -0.30 1.62 16 45 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 371.39 15.07 5.60 5.60 Total: -1.00 -35.79 371.39 -9.22 -45.02 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -6.41 Total: 2.48 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: 0.41 Total: 6.02 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: -1.01 Total: -55.99 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.30 Total: -19.45 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -2.49 Total: -1.07 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.79 -9.22 -45.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195521580.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.826 kcal (2) G-P(sol) polarization free energy of solvation -35.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds