Wall clock time and date at job start Sat Apr 11 2020 05:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47001 * 2 1 4 4 C 1.50699 * 109.47267 * 120.00133 * 2 1 3 5 5 O 1.21280 * 119.99991 * 93.60050 * 4 2 1 6 6 N 1.34775 * 120.00125 * 273.60395 * 4 2 1 7 7 C 1.46501 * 119.99855 * 0.02562 * 6 4 2 8 8 C 1.46496 * 120.00276 * 179.97438 * 6 4 2 9 9 C 1.50698 * 109.47199 * 89.99715 * 8 6 4 10 10 H 1.07996 * 119.99935 * 0.02562 * 9 8 6 11 11 C 1.37874 * 120.00188 * 180.02562 * 9 8 6 12 12 N 1.31521 * 119.99938 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00235 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47138 * 359.97438 * 13 11 9 15 15 H 1.48507 * 109.47092 * 119.99693 * 13 11 9 16 16 H 1.48504 * 109.47403 * 239.99609 * 13 11 9 17 17 N 1.46901 * 109.46816 * 239.99868 * 2 1 3 18 18 C 1.47007 * 111.00289 * 310.64207 * 17 2 1 19 19 C 1.53093 * 109.25909 * 177.60724 * 18 17 2 20 20 O 1.43016 * 109.29617 * 56.82353 * 19 18 17 21 21 C 1.43012 * 113.73844 * 301.40247 * 20 19 18 22 22 H 1.09000 * 109.50779 * 298.64396 * 21 20 19 23 23 C 1.50703 * 109.51022 * 178.54951 * 21 20 19 24 24 N 1.29021 * 124.91713 * 315.05285 * 23 21 20 25 25 C 1.31782 * 117.12655 * 180.02562 * 24 23 21 26 26 C 1.33643 * 114.49766 * 359.97438 * 25 24 23 27 27 S 1.70981 * 124.91473 * 135.08285 * 23 21 20 28 28 C 1.47012 * 110.99750 * 187.00514 * 17 2 1 29 29 H 1.09003 * 109.47562 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.47351 * 299.99953 * 1 2 3 31 31 H 1.09000 * 109.47665 * 59.99875 * 1 2 3 32 32 H 1.08991 * 109.47268 * 90.00045 * 7 6 4 33 33 H 1.08998 * 109.46964 * 210.00301 * 7 6 4 34 34 H 1.08998 * 109.47122 * 329.99801 * 7 6 4 35 35 H 1.08997 * 109.47611 * 210.00589 * 8 6 4 36 36 H 1.09005 * 109.47242 * 329.99801 * 8 6 4 37 37 H 0.96996 * 119.99955 * 180.02562 * 12 11 9 38 38 H 1.09001 * 109.50715 * 297.54169 * 18 17 2 39 39 H 1.09001 * 109.51058 * 57.67296 * 18 17 2 40 40 H 1.08999 * 109.50848 * 176.78364 * 19 18 17 41 41 H 1.09003 * 109.50914 * 296.87080 * 19 18 17 42 42 H 1.07997 * 122.75196 * 179.97438 * 25 24 23 43 43 H 1.08001 * 126.03746 * 179.97438 * 26 25 24 44 44 H 1.08988 * 109.50693 * 62.45861 * 28 17 2 45 45 H 1.09001 * 109.50592 * 302.32345 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.2967 -1.8931 1.1823 6 7 2.1878 -0.0316 2.3843 7 6 1.8679 1.3969 2.4425 8 6 2.6756 -0.7223 3.5806 9 6 4.1800 -0.6460 3.6263 10 1 4.7188 -0.1339 2.8429 11 6 4.8685 -1.2300 4.6683 12 7 4.2124 -1.8533 5.6227 13 14 6.7332 -1.1349 4.7254 14 1 7.2270 -0.3842 3.5431 15 1 7.1555 -0.4377 5.9668 16 1 7.2996 -2.5076 4.7116 17 7 2.0196 -0.6925 -1.1995 18 6 1.3524 -1.9917 -1.3670 19 6 1.8472 -2.6509 -2.6571 20 8 3.2710 -2.7757 -2.6081 21 6 3.9530 -1.5293 -2.4451 22 1 3.7334 -0.8807 -3.2932 23 6 5.4381 -1.7742 -2.3700 24 7 5.9994 -2.6998 -1.6680 25 6 7.3142 -2.7756 -1.7149 26 6 7.8942 -1.8634 -2.5006 27 16 6.6232 -0.8651 -3.2022 28 6 3.4795 -0.8588 -1.1527 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 0.8218 1.5239 2.7209 33 1 2.5028 1.8815 3.1843 34 1 2.0413 1.8482 1.4656 35 1 2.2605 -0.2470 4.4693 36 1 2.3656 -1.7668 3.5489 37 1 4.6967 -2.2638 6.3559 38 1 1.5866 -2.6334 -0.5175 39 1 0.2742 -1.8425 -1.4248 40 1 1.3983 -3.6392 -2.7563 41 1 1.5651 -2.0356 -3.5116 42 1 7.8768 -3.5144 -1.1635 43 1 8.9548 -1.7562 -2.6740 44 1 3.7477 -1.4822 -0.2999 45 1 3.9541 0.1175 -1.0543 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195521580.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:43 Heat of formation + Delta-G solvation = -31.518075 kcal Electronic energy + Delta-G solvation = -28722.375963 eV Core-core repulsion = 24866.852322 eV Total energy + Delta-G solvation = -3855.523641 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.81249 -40.75419 -39.67686 -37.13655 -36.39296 -34.81552 -33.62901 -32.21889 -30.63625 -29.76257 -28.24807 -27.39209 -25.94737 -25.87845 -24.55473 -23.34836 -22.02831 -20.66358 -19.93356 -19.17153 -18.77792 -18.12928 -17.72758 -17.39215 -16.97111 -16.55219 -16.39089 -16.22119 -15.93353 -15.64176 -15.42036 -15.12445 -14.95967 -14.63668 -14.32467 -14.20219 -13.80102 -13.60353 -13.51283 -13.25948 -13.08422 -13.04751 -12.85520 -12.75717 -12.59724 -12.54173 -12.35415 -12.23946 -11.88176 -11.70937 -11.70061 -11.12019 -10.80393 -10.71600 -10.60210 -10.40858 -9.91240 -9.44279 -9.26592 -8.29294 -6.43709 -0.37525 0.26711 0.66784 1.26504 1.30256 1.40900 1.76483 1.79008 2.25752 2.41341 2.62907 2.79359 2.99978 3.21841 3.66469 3.72997 3.81967 3.96441 4.01432 4.07901 4.20396 4.32873 4.37667 4.41397 4.44624 4.47565 4.50127 4.64833 4.73782 4.83401 4.86674 4.90687 4.94498 4.97805 5.10377 5.14337 5.21989 5.22906 5.50360 5.67695 5.79739 5.79990 5.99935 6.09560 6.63159 6.75307 6.81582 7.22431 7.45458 8.77793 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008377 B = 0.005227 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3341.839841 B = 5355.766921 C = 7765.753248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.066 3.934 3 H 0.129 0.871 4 C 0.467 3.533 5 O -0.587 6.587 6 N -0.608 5.608 7 C 0.075 3.925 8 C 0.261 3.739 9 C -0.536 4.536 10 H 0.046 0.954 11 C 0.008 3.992 12 N -0.927 5.927 13 Si 0.962 3.038 14 H -0.270 1.270 15 H -0.262 1.262 16 H -0.284 1.284 17 N -0.487 5.487 18 C -0.008 4.008 19 C 0.066 3.934 20 O -0.392 6.392 21 C 0.184 3.816 22 H 0.114 0.886 23 C 0.013 3.987 24 N -0.496 5.496 25 C 0.006 3.994 26 C -0.242 4.242 27 S 0.197 5.803 28 C 0.021 3.979 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.108 0.892 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.023 0.977 36 H -0.008 1.008 37 H 0.267 0.733 38 H 0.038 0.962 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.087 0.913 42 H 0.184 0.816 43 H 0.217 0.783 44 H 0.026 0.974 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.103 8.999 -21.372 23.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.046 4.046 3 H 0.146 0.854 4 C 0.255 3.745 5 O -0.469 6.469 6 N -0.339 5.339 7 C -0.067 4.067 8 C 0.139 3.861 9 C -0.575 4.575 10 H 0.064 0.936 11 C -0.191 4.191 12 N -0.567 5.567 13 Si 0.787 3.213 14 H -0.195 1.195 15 H -0.187 1.187 16 H -0.210 1.210 17 N -0.210 5.210 18 C -0.136 4.136 19 C -0.010 4.010 20 O -0.311 6.311 21 C 0.123 3.877 22 H 0.132 0.868 23 C -0.264 4.264 24 N -0.211 5.211 25 C -0.144 4.144 26 C -0.381 4.381 27 S 0.450 5.550 28 C -0.109 4.109 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.126 0.874 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.113 0.887 35 H 0.041 0.959 36 H 0.010 0.990 37 H 0.076 0.924 38 H 0.056 0.944 39 H 0.132 0.868 40 H 0.129 0.871 41 H 0.106 0.894 42 H 0.201 0.799 43 H 0.234 0.766 44 H 0.044 0.956 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.342 8.928 -22.019 23.875 hybrid contribution 1.706 -1.662 2.379 3.366 sum -0.636 7.266 -19.640 20.951 Atomic orbital electron populations 1.21844 0.89283 1.03040 1.04992 1.22182 0.99319 0.99036 0.84061 0.85404 1.22597 0.78041 0.87654 0.86249 1.90629 1.53231 1.18380 1.84613 1.48334 1.63281 1.11474 1.10837 1.22018 1.01534 0.79221 1.03921 1.18686 0.93311 0.91408 0.82651 1.21638 0.92870 1.35400 1.07599 0.93561 1.25820 1.03697 0.94461 0.95087 1.70048 1.37576 1.36744 1.12321 0.85452 0.79443 0.77911 0.78542 1.19466 1.18699 1.20969 1.62916 1.03412 1.20718 1.33963 1.23194 1.00915 0.90486 0.98990 1.22910 0.79059 1.02490 0.96549 1.88061 1.20141 1.29097 1.93807 1.20415 0.83458 0.86401 0.97475 0.86826 1.26886 1.01338 0.97984 1.00200 1.66179 1.12208 1.22105 1.20652 1.22180 0.88398 1.02179 1.01681 1.27642 1.06120 1.00020 1.04341 1.83369 0.95788 1.32528 1.43272 1.22753 0.89871 1.00805 0.97466 0.92903 0.90433 0.87378 0.90581 0.91717 0.88732 0.95867 0.99016 0.92380 0.94403 0.86766 0.87122 0.89449 0.79902 0.76646 0.95592 0.89333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 8.57 71.98 0.62 -2.16 16 2 C 0.07 1.86 2.32 44.17 0.10 1.96 16 3 H 0.13 2.96 6.00 -2.39 -0.01 2.95 16 4 C 0.47 19.67 5.88 87.66 0.52 20.18 16 5 O -0.59 -31.34 11.87 -3.03 -0.04 -31.38 16 6 N -0.61 -26.26 2.86 -851.16 -2.43 -28.69 16 7 C 0.07 2.21 10.08 127.77 1.29 3.50 16 8 C 0.26 14.62 5.16 85.63 0.44 15.06 16 9 C -0.54 -32.24 9.39 25.60 0.24 -32.00 16 10 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 11 C 0.01 0.50 5.46 84.65 0.46 0.96 16 12 N -0.93 -57.99 13.29 21.45 0.28 -57.71 16 13 Si 0.96 47.01 29.54 68.60 2.03 49.03 16 14 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 15 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 16 H -0.28 -13.86 7.11 99.48 0.71 -13.16 16 17 N -0.49 -13.94 4.81 -874.41 -4.20 -18.14 16 18 C -0.01 -0.24 4.76 86.31 0.41 0.17 16 19 C 0.07 1.67 7.01 72.01 0.50 2.18 16 20 O -0.39 -13.10 10.44 -148.98 -1.56 -14.65 16 21 C 0.18 5.52 3.31 29.88 0.10 5.62 16 22 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 23 C 0.01 0.42 6.29 88.52 0.56 0.97 16 24 N -0.50 -18.52 10.52 -191.44 -2.01 -20.54 16 25 C 0.01 0.18 11.35 83.66 0.95 1.13 16 26 C -0.24 -5.16 11.37 66.78 0.76 -4.40 16 27 S 0.20 4.16 23.18 -56.49 -1.31 2.85 16 28 C 0.02 0.73 4.42 86.32 0.38 1.11 16 29 H 0.05 1.24 6.27 -2.39 -0.01 1.22 16 30 H 0.08 1.46 7.96 -2.38 -0.02 1.45 16 31 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.06 2.04 8.07 -2.39 -0.02 2.02 16 34 H 0.09 2.09 5.83 -2.39 -0.01 2.07 16 35 H 0.02 1.31 8.07 -2.39 -0.02 1.29 16 36 H -0.01 -0.54 7.42 -2.38 -0.02 -0.56 16 37 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 38 H 0.04 1.54 5.59 -2.39 -0.01 1.52 16 39 H 0.11 2.60 6.05 -2.39 -0.01 2.59 16 40 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.18 4.71 8.06 -2.91 -0.02 4.68 16 43 H 0.22 2.74 8.06 -2.91 -0.02 2.72 16 44 H 0.03 1.23 5.87 -2.39 -0.01 1.21 16 45 H 0.09 2.74 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -87.19 371.39 -0.91 -88.10 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 1.00 Total: 16.84 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: 7.33 Total: 14.28 kcal Atomic # 7 Polarization: -116.72 SS G_CDS: -8.36 Total: -125.08 kcal Atomic # 8 Polarization: -44.44 SS G_CDS: -1.59 Total: -46.03 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.03 kcal Atomic # 16 Polarization: 4.16 SS G_CDS: -1.31 Total: 2.85 kcal Total: -87.19 -0.91 -88.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195521580.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.583 kcal (2) G-P(sol) polarization free energy of solvation -87.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds