Wall clock time and date at job start Sat Apr 11 2020 05:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47293 * 2 1 4 4 C 1.50701 * 109.47118 * 120.00668 * 2 1 3 5 5 H 1.07995 * 120.00590 * 119.99977 * 4 2 1 6 6 C 1.37885 * 119.99580 * 299.99929 * 4 2 1 7 7 N 1.31516 * 119.99981 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99991 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47371 * 59.99476 * 8 6 4 10 10 H 1.48496 * 109.47139 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46960 * 299.99667 * 8 6 4 12 12 N 1.46503 * 109.47115 * 240.00205 * 2 1 3 13 13 C 1.46505 * 119.99768 * 299.99966 * 12 2 1 14 14 C 1.34773 * 120.00068 * 120.00343 * 12 2 1 15 15 O 1.21612 * 120.00031 * 4.44821 * 14 12 2 16 16 C 1.47374 * 120.00072 * 184.45180 * 14 12 2 17 17 C 1.39855 * 120.09133 * 310.73196 * 16 14 12 18 18 C 1.36534 * 120.07510 * 180.27917 * 17 16 14 19 19 N 1.48027 * 119.85983 * 179.76833 * 18 17 16 20 20 O 1.21793 * 120.00375 * 359.97017 * 19 18 17 21 21 O 1.21797 * 119.99474 * 179.97438 * 19 18 17 22 22 C 1.39292 * 120.27470 * 359.74234 * 18 17 16 23 23 N 1.39046 * 119.91222 * 180.02562 * 22 18 17 24 24 C 1.46908 * 111.00153 * 119.97693 * 23 22 18 25 25 C 1.46903 * 111.00151 * 243.93210 * 23 22 18 26 26 C 1.39078 * 120.18013 * 0.02562 * 22 18 17 27 27 C 1.38007 * 119.92103 * 359.97438 * 26 22 18 28 28 F 1.35098 * 120.13438 * 179.97438 * 27 26 22 29 29 H 1.08999 * 109.47009 * 299.99660 * 1 2 3 30 30 H 1.08998 * 109.46934 * 59.99698 * 1 2 3 31 31 H 1.08994 * 109.47094 * 179.97438 * 1 2 3 32 32 H 0.96999 * 120.00133 * 180.02562 * 7 6 4 33 33 H 1.08993 * 109.47351 * 273.11100 * 13 12 2 34 34 H 1.09000 * 109.47062 * 33.11369 * 13 12 2 35 35 H 1.09004 * 109.46480 * 153.11390 * 13 12 2 36 36 H 1.07998 * 119.96009 * 0.04104 * 17 16 14 37 37 H 1.09002 * 109.46806 * 59.99921 * 24 23 22 38 38 H 1.09001 * 109.47271 * 179.97438 * 24 23 22 39 39 H 1.08998 * 109.46925 * 300.00412 * 24 23 22 40 40 H 1.08998 * 109.46817 * 59.99892 * 25 23 22 41 41 H 1.08998 * 109.46955 * 179.97438 * 25 23 22 42 42 H 1.08998 * 109.46814 * 299.99484 * 25 23 22 43 43 H 1.07999 * 120.04319 * 180.02562 * 26 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3224 -1.1198 4.0079 9 1 3.8073 -1.1194 4.0078 10 1 1.8277 -0.4195 5.2204 11 1 1.8278 -2.5201 4.0081 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4281 14 6 2.7932 -0.0356 -2.0833 15 8 3.1539 1.1025 -1.8517 16 6 3.2034 -0.6985 -3.3340 17 6 3.7513 -1.9847 -3.2988 18 6 4.1365 -2.5963 -4.4572 19 7 4.7207 -3.9557 -4.4139 20 8 4.8574 -4.5262 -3.3465 21 8 5.0647 -4.5038 -5.4458 22 6 3.9815 -1.9466 -5.6795 23 7 4.3758 -2.5767 -6.8546 24 6 3.2400 -2.7378 -7.7723 25 6 5.4748 -1.8464 -7.5003 26 6 3.4333 -0.6693 -5.7277 27 6 3.0414 -0.0439 -4.5616 28 9 2.5089 1.1971 -4.6034 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 0.7094 1.1616 3.4844 33 1 2.3851 -2.7377 -0.9250 34 1 0.6668 -2.2862 -1.0333 35 1 1.6778 -2.2991 -2.4984 36 1 3.8735 -2.4933 -2.3539 37 1 2.8320 -1.7581 -8.0209 38 1 3.5763 -3.2328 -8.6833 39 1 2.4690 -3.3416 -7.2936 40 1 6.3284 -1.8023 -6.8240 41 1 5.7639 -2.3610 -8.4166 42 1 5.1477 -0.8345 -7.7392 43 1 3.3138 -0.1677 -6.6767 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279196388.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:58 Heat of formation + Delta-G solvation = -19.408864 kcal Electronic energy + Delta-G solvation = -30493.620396 eV Core-core repulsion = 26072.408674 eV Total energy + Delta-G solvation = -4421.211722 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.41154 -42.23093 -40.50978 -39.27768 -37.02193 -36.25348 -35.59827 -33.06951 -32.03700 -31.19793 -29.21089 -28.14234 -26.63708 -26.51005 -25.60821 -25.25752 -23.08490 -22.57969 -21.36282 -19.73287 -18.72440 -18.38420 -17.96965 -17.49976 -17.18732 -16.90937 -16.32076 -16.10167 -15.78961 -15.47873 -15.27391 -15.01996 -14.68909 -14.49196 -14.20184 -13.74886 -13.21965 -13.07941 -12.88932 -12.72476 -12.64933 -12.49665 -12.21912 -12.07588 -11.67951 -11.63390 -11.41326 -11.18247 -11.14010 -10.97364 -10.89260 -10.83877 -10.37692 -10.25135 -9.81525 -9.57430 -9.39140 -9.24153 -9.12651 -8.51066 -7.84959 -6.15044 -4.23900 -0.38530 0.17869 1.14625 1.34083 2.49331 2.99015 3.10518 3.25789 3.30725 3.31983 3.46732 3.56735 3.91107 4.20358 4.32311 4.41347 4.50008 4.73570 4.75662 4.80561 5.00998 5.02114 5.09691 5.17356 5.22077 5.38376 5.40526 5.42287 5.44334 5.77275 5.85511 6.12307 6.19911 6.29311 6.54062 6.62864 6.67029 6.89965 7.18390 7.31988 7.60235 7.76261 7.87457 8.03959 8.26658 8.57001 8.81043 9.42881 10.90383 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016352 B = 0.003428 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.929683 B = 8165.298628 C = 9290.602253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.259 3.741 3 H 0.066 0.934 4 C -0.530 4.530 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.887 5.887 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.576 5.576 13 C 0.076 3.924 14 C 0.545 3.455 15 O -0.526 6.526 16 C -0.150 4.150 17 C 0.005 3.995 18 C -0.044 4.044 19 N 0.032 4.968 20 O -0.187 6.187 21 O -0.102 6.102 22 C 0.193 3.807 23 N -0.501 5.501 24 C 0.027 3.973 25 C 0.028 3.972 26 C -0.197 4.197 27 C 0.206 3.794 28 F -0.103 7.103 29 H 0.097 0.903 30 H 0.012 0.988 31 H 0.032 0.968 32 H 0.265 0.735 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.050 0.950 36 H 0.174 0.826 37 H 0.036 0.964 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.036 0.964 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.315 -6.324 -21.037 22.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.159 3.841 3 H 0.084 0.916 4 C -0.568 4.568 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.728 3.272 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.306 5.306 13 C -0.068 4.068 14 C 0.329 3.671 15 O -0.404 6.404 16 C -0.155 4.155 17 C -0.015 4.015 18 C -0.129 4.129 19 N 0.554 4.446 20 O -0.392 6.392 21 O -0.332 6.332 22 C 0.096 3.904 23 N -0.222 5.222 24 C -0.119 4.119 25 C -0.117 4.117 26 C -0.219 4.219 27 C 0.185 3.815 28 F -0.081 7.081 29 H 0.116 0.884 30 H 0.031 0.969 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.069 0.931 36 H 0.191 0.809 37 H 0.055 0.945 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.105 0.895 42 H 0.055 0.945 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 3.247 -5.366 -20.533 21.469 hybrid contribution 0.017 0.152 0.645 0.663 sum 3.264 -5.214 -19.888 20.817 Atomic orbital electron populations 1.22119 0.97821 0.99632 1.01115 1.19082 0.91074 0.94541 0.79369 0.91583 1.21236 1.32316 1.13233 0.90055 0.92068 1.24887 0.94786 0.94921 0.99033 1.69858 1.36108 1.22467 1.24087 0.86512 0.79344 0.79603 0.81728 1.20118 1.21133 1.20073 1.48268 1.47536 1.11736 1.23053 1.21845 1.02739 0.82980 0.99211 1.17620 0.80608 0.86241 0.82602 1.90834 1.55145 1.17725 1.76684 1.20388 1.05224 0.94788 0.95111 1.20930 0.89705 0.91989 0.98870 1.20677 1.10791 0.86607 0.94830 1.43217 0.98885 1.01829 1.00642 1.94587 1.60493 1.65440 1.18713 1.94574 1.49282 1.66204 1.23100 1.18292 0.91680 0.89549 0.90858 1.59633 1.10059 1.48802 1.03692 1.22547 0.92056 1.00993 0.96293 1.22530 0.93035 0.96017 1.00163 1.21618 1.05223 0.96083 0.98937 1.17707 0.91136 0.80163 0.92535 1.91648 1.81999 1.37431 1.97012 0.88434 0.96889 0.94863 0.92484 0.92095 0.90129 0.93136 0.80878 0.94525 0.89492 0.90764 0.90801 0.89460 0.94503 0.82252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 8.94 37.16 0.33 -3.08 16 2 C 0.26 6.38 2.63 -69.08 -0.18 6.20 16 3 H 0.07 1.89 6.91 -51.93 -0.36 1.53 16 4 C -0.53 -13.91 8.37 -34.44 -0.29 -14.20 16 5 H 0.06 1.57 7.56 -52.49 -0.40 1.18 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -24.54 11.32 55.43 0.63 -23.91 16 8 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 N -0.58 -11.81 2.75 -176.55 -0.49 -12.29 16 13 C 0.08 1.22 8.35 59.85 0.50 1.72 16 14 C 0.54 10.99 6.99 -12.54 -0.09 10.90 16 15 O -0.53 -12.71 16.00 5.27 0.08 -12.63 16 16 C -0.15 -2.29 4.89 -104.89 -0.51 -2.80 16 17 C 0.00 0.07 7.05 -39.59 -0.28 -0.21 16 18 C -0.04 -0.56 6.83 -80.17 -0.55 -1.11 16 19 N 0.03 0.44 4.45 33.86 0.15 0.59 16 20 O -0.19 -2.87 18.41 -29.46 -0.54 -3.42 16 21 O -0.10 -1.42 17.08 -29.46 -0.50 -1.92 16 22 C 0.19 2.02 4.71 -83.89 -0.40 1.63 16 23 N -0.50 -4.41 2.82 -186.88 -0.53 -4.94 16 24 C 0.03 0.17 9.34 60.07 0.56 0.73 16 25 C 0.03 0.19 9.38 60.07 0.56 0.75 16 26 C -0.20 -1.94 8.51 -39.35 -0.34 -2.27 16 27 C 0.21 2.73 7.25 -38.98 -0.28 2.45 16 28 F -0.10 -1.54 16.52 2.25 0.04 -1.50 16 29 H 0.10 2.47 6.07 -51.93 -0.32 2.16 16 30 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.03 0.70 6.68 -51.93 -0.35 0.35 16 32 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.06 0.95 7.47 -51.93 -0.39 0.56 16 34 H 0.08 1.29 6.44 -51.93 -0.33 0.96 16 35 H 0.05 0.67 5.67 -51.93 -0.29 0.38 16 36 H 0.17 2.36 6.08 -52.49 -0.32 2.04 16 37 H 0.04 0.19 7.10 -51.93 -0.37 -0.18 16 38 H 0.09 0.42 8.12 -51.93 -0.42 0.00 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.09 0.44 8.12 -51.93 -0.42 0.01 16 42 H 0.04 0.20 7.31 -51.93 -0.38 -0.18 16 43 H 0.16 1.12 6.99 -52.49 -0.37 0.75 16 LS Contribution 362.01 15.07 5.46 5.46 Total: -1.00 -31.20 362.01 -6.89 -38.09 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -5.11 Total: -1.62 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -1.05 Total: 2.38 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: -0.24 Total: -40.55 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.96 Total: -17.96 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.20 -6.89 -38.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279196388.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.677 kcal (2) G-P(sol) polarization free energy of solvation -31.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds