Wall clock time and date at job start Sat Apr 11 2020 05:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.49352 * 2 1 4 4 C 1.53032 * 109.49666 * 120.06911 * 2 1 3 5 5 C 1.53035 * 109.54074 * 58.61936 * 4 2 1 6 6 C 1.53197 * 109.31360 * 61.36639 * 5 4 2 7 7 N 1.46926 * 108.77300 * 305.36461 * 6 5 4 8 8 C 1.34774 * 120.63229 * 233.61469 * 7 6 5 9 9 O 1.21647 * 120.00175 * 172.85832 * 8 7 6 10 10 C 1.47183 * 119.99979 * 352.85036 * 8 7 6 11 11 C 1.35088 * 122.49063 * 171.43674 * 10 8 7 12 12 S 1.76180 * 108.22164 * 180.02562 * 11 10 8 13 13 C 1.76053 * 90.16049 * 359.97438 * 12 11 10 14 14 O 1.35494 * 125.18333 * 179.97438 * 13 12 11 15 15 N 1.29254 * 109.63834 * 359.73773 * 13 12 11 16 16 C 1.46940 * 118.76335 * 53.58637 * 7 6 5 17 17 H 1.08996 * 109.56055 * 66.21945 * 16 7 6 18 18 C 1.53002 * 109.61179 * 186.64469 * 16 7 6 19 19 C 1.53003 * 109.46834 * 180.18862 * 18 16 7 20 20 N 1.46502 * 109.47155 * 174.62695 * 19 18 16 21 21 C 1.36940 * 119.99935 * 179.97438 * 20 19 18 22 22 H 1.08003 * 119.99979 * 0.02562 * 21 20 19 23 23 C 1.38807 * 119.99878 * 179.97438 * 21 20 19 24 24 N 1.31618 * 120.00093 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00085 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47192 * 90.00111 * 25 23 21 27 27 H 1.48498 * 109.47064 * 210.00269 * 25 23 21 28 28 H 1.48504 * 109.46872 * 330.00499 * 25 23 21 29 29 H 1.08999 * 109.47206 * 299.99246 * 1 2 3 30 30 H 1.09000 * 109.47230 * 60.00056 * 1 2 3 31 31 H 1.09004 * 109.47237 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.45830 * 178.64369 * 4 2 1 33 33 H 1.09008 * 109.45995 * 298.61079 * 4 2 1 34 34 H 1.09000 * 109.49858 * 181.31384 * 5 4 2 35 35 H 1.08996 * 109.49863 * 301.38031 * 5 4 2 36 36 H 1.08995 * 109.58903 * 65.15050 * 6 5 4 37 37 H 1.08998 * 109.58513 * 185.57893 * 6 5 4 38 38 H 1.08006 * 125.88683 * 0.02562 * 11 10 8 39 39 H 0.96698 * 113.99655 * 359.97261 * 14 13 12 40 40 H 1.09003 * 109.47383 * 300.18245 * 18 16 7 41 41 H 1.09000 * 109.47674 * 60.18390 * 18 16 7 42 42 H 1.09004 * 109.46671 * 294.62101 * 19 18 16 43 43 H 1.09001 * 109.47354 * 54.62189 * 19 18 16 44 44 H 0.96996 * 119.99679 * 359.97438 * 20 19 18 45 45 H 0.96997 * 120.00294 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7228 1.2484 5 6 1.5037 -2.1557 1.2660 6 6 2.0154 -2.9038 0.0309 7 7 1.6529 -2.1382 -1.1695 8 6 0.9762 -2.7222 -2.1782 9 8 0.5686 -2.0502 -3.1066 10 6 0.7305 -4.1732 -2.1564 11 6 -0.0811 -4.7852 -3.0462 12 16 -0.1036 -6.5078 -2.6773 13 6 1.0031 -6.2398 -1.3346 14 8 1.4774 -7.2041 -0.5094 15 7 1.2982 -4.9836 -1.2590 16 6 2.0413 -0.7233 -1.2499 17 1 3.1274 -0.6453 -1.2986 18 6 1.4222 -0.0908 -2.4979 19 6 1.8325 1.3808 -2.5808 20 7 1.3474 1.9529 -3.8392 21 6 1.5964 3.2666 -4.1351 22 1 2.1508 3.8808 -3.4409 23 6 1.1372 3.8084 -5.3277 24 7 0.4621 3.0598 -6.1739 25 14 1.4775 5.6002 -5.7317 26 1 2.7635 5.7064 -6.4667 27 1 0.3791 6.1344 -6.5763 28 1 1.5605 6.3842 -4.4733 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1305 -0.7435 1.2357 33 1 1.6980 -0.1957 2.1389 34 1 1.8488 -2.6626 2.1672 35 1 0.4140 -2.1359 1.2544 36 1 3.0993 -3.0035 0.0872 37 1 1.5573 -3.8918 -0.0136 38 1 -0.6228 -4.3018 -3.8458 39 1 1.1533 -8.0917 -0.7146 40 1 1.7750 -0.6168 -3.3850 41 1 0.3360 -0.1626 -2.4409 42 1 1.3990 1.9266 -1.7427 43 1 2.9191 1.4579 -2.5416 44 1 0.8499 1.4011 -4.4628 45 1 0.1416 3.4383 -7.0075 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565939188.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:35 Heat of formation + Delta-G solvation = -9.303799 kcal Electronic energy + Delta-G solvation = -28140.878895 eV Core-core repulsion = 24286.318538 eV Total energy + Delta-G solvation = -3854.560358 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.18513 -40.58343 -39.02332 -38.25886 -36.92166 -34.80900 -34.17523 -32.54181 -31.23470 -29.86507 -28.05311 -26.98749 -25.98915 -25.15165 -23.97209 -22.95002 -22.04001 -21.27200 -20.51149 -19.34527 -19.14128 -18.32573 -17.35919 -17.18610 -16.84610 -16.70776 -16.50040 -16.31893 -15.81679 -15.43917 -15.33011 -15.07012 -14.79194 -14.72935 -14.28938 -14.11919 -13.88581 -13.57994 -13.41372 -13.27011 -13.04249 -12.94576 -12.82348 -12.54444 -12.43668 -12.33107 -12.12175 -11.95675 -11.77895 -11.69884 -11.39554 -11.28184 -10.91090 -10.66184 -10.42502 -9.99653 -9.72709 -9.43062 -9.00114 -7.93850 -5.24348 -0.53905 -0.20366 0.24482 0.88450 1.44912 1.48878 1.57306 1.80429 2.11083 2.25946 2.56157 3.38268 3.43492 3.70602 3.79625 3.94209 4.05760 4.10913 4.11817 4.17740 4.27030 4.45130 4.50346 4.57323 4.61329 4.67912 4.73780 4.80460 4.81871 4.87522 5.00565 5.09821 5.14867 5.24847 5.26448 5.34857 5.43756 5.44954 5.52051 5.58478 5.76220 5.84483 6.27230 6.39040 6.60261 7.11982 7.31909 8.09068 8.33763 9.30393 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015284 B = 0.002940 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.580211 B = 9520.747890 C =10992.450154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.101 4.101 3 H 0.081 0.919 4 C -0.109 4.109 5 C -0.130 4.130 6 C 0.075 3.925 7 N -0.583 5.583 8 C 0.573 3.427 9 O -0.554 6.554 10 C 0.029 3.971 11 C -0.195 4.195 12 S 0.139 5.861 13 C 0.287 3.713 14 O -0.417 6.417 15 N -0.492 5.492 16 C 0.158 3.842 17 H 0.077 0.923 18 C -0.092 4.092 19 C 0.150 3.850 20 N -0.747 5.747 21 C -0.247 4.247 22 H 0.078 0.922 23 C -0.081 4.081 24 N -0.973 5.973 25 Si 0.981 3.019 26 H -0.285 1.285 27 H -0.293 1.293 28 H -0.267 1.267 29 H 0.067 0.933 30 H 0.033 0.967 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.145 0.855 38 H 0.190 0.810 39 H 0.443 0.557 40 H 0.052 0.948 41 H 0.062 0.938 42 H 0.025 0.975 43 H 0.015 0.985 44 H 0.370 0.630 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.640 -27.196 18.293 32.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.120 4.120 3 H 0.100 0.900 4 C -0.147 4.147 5 C -0.168 4.168 6 C -0.047 4.047 7 N -0.313 5.313 8 C 0.359 3.641 9 O -0.433 6.433 10 C -0.100 4.100 11 C -0.337 4.337 12 S 0.388 5.612 13 C -0.032 4.032 14 O -0.220 6.220 15 N -0.224 5.224 16 C 0.055 3.945 17 H 0.095 0.905 18 C -0.130 4.130 19 C 0.023 3.977 20 N -0.389 5.389 21 C -0.378 4.378 22 H 0.096 0.904 23 C -0.273 4.273 24 N -0.624 5.624 25 Si 0.809 3.191 26 H -0.212 1.212 27 H -0.220 1.220 28 H -0.191 1.191 29 H 0.086 0.914 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.114 0.886 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.162 0.838 38 H 0.207 0.793 39 H 0.304 0.696 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.043 0.957 43 H 0.033 0.967 44 H 0.201 0.799 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.698 -27.085 18.192 32.635 hybrid contribution -0.206 1.342 -1.278 1.865 sum 0.492 -25.743 16.914 30.806 Atomic orbital electron populations 1.21798 0.95386 1.01223 1.01207 1.21531 0.96309 0.99744 0.94425 0.90042 1.21558 1.00928 0.95656 0.96544 1.21962 1.00979 0.95782 0.98087 1.23000 1.01291 0.98364 0.82043 1.47983 1.54150 1.10767 1.18441 1.17668 0.78505 0.85455 0.82460 1.90993 1.52148 1.62935 1.37271 1.19855 1.00591 0.94295 0.95280 1.27045 1.04818 0.96827 1.05003 1.85061 1.44992 1.03976 1.27216 1.25781 0.94632 0.90109 0.92722 1.84722 1.67403 1.19936 1.49980 1.66184 1.28754 1.01209 1.26272 1.21267 0.98428 0.79579 0.95254 0.90487 1.21960 1.00963 0.93274 0.96829 1.20945 0.95709 0.93210 0.87817 1.42624 1.66540 1.09616 1.20167 1.19699 1.28041 0.88250 1.01850 0.90439 1.25699 1.01466 1.02890 0.97263 1.69872 1.43946 1.37227 1.11340 0.85037 0.76837 0.79353 0.77904 1.21205 1.21997 1.19121 0.91396 0.94790 0.93055 0.90976 0.90273 0.88611 0.92181 0.91485 0.83834 0.79261 0.69598 0.92918 0.91970 0.95675 0.96689 0.79884 0.94008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.92 8.20 71.98 0.59 -3.33 16 2 C -0.10 -2.66 2.31 -10.72 -0.02 -2.68 16 3 H 0.08 2.24 6.90 -2.39 -0.02 2.22 16 4 C -0.11 -2.09 5.43 30.62 0.17 -1.92 16 5 C -0.13 -2.33 5.74 30.67 0.18 -2.15 16 6 C 0.07 1.62 5.98 86.36 0.52 2.14 16 7 N -0.58 -16.74 2.41 -799.10 -1.93 -18.67 16 8 C 0.57 18.67 7.56 86.59 0.65 19.32 16 9 O -0.55 -22.59 12.10 -4.18 -0.05 -22.65 16 10 C 0.03 0.74 6.45 40.50 0.26 1.01 16 11 C -0.20 -4.06 10.84 67.09 0.73 -3.34 16 12 S 0.14 1.50 23.38 -56.49 -1.32 0.18 16 13 C 0.29 3.85 8.91 130.62 1.16 5.02 16 14 O -0.42 -2.89 13.64 -87.95 -1.20 -4.09 16 15 N -0.49 -10.27 6.66 -304.24 -2.03 -12.30 16 16 C 0.16 4.94 2.71 44.97 0.12 5.06 16 17 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 18 C -0.09 -3.80 2.77 30.60 0.08 -3.71 16 19 C 0.15 6.92 5.78 86.38 0.50 7.42 16 20 N -0.75 -43.37 5.60 -343.43 -1.92 -45.29 16 21 C -0.25 -15.03 9.99 84.03 0.84 -14.19 16 22 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 23 C -0.08 -5.03 5.50 84.86 0.47 -4.56 16 24 N -0.97 -64.25 13.06 21.65 0.28 -63.97 16 25 Si 0.98 48.83 29.55 68.60 2.03 50.85 16 26 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 27 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 28 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 29 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.03 1.17 6.34 -2.39 -0.02 1.16 16 31 H 0.05 1.43 5.98 -2.38 -0.01 1.42 16 32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.06 1.18 6.34 -2.39 -0.02 1.17 16 36 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.15 3.12 4.04 -50.41 -0.20 2.92 16 38 H 0.19 4.07 8.02 -2.91 -0.02 4.04 16 39 H 0.44 -2.60 9.03 -74.06 -0.67 -3.27 16 40 H 0.05 2.47 6.49 -2.39 -0.02 2.46 16 41 H 0.06 2.79 5.16 -2.39 -0.01 2.78 16 42 H 0.03 1.13 6.89 -2.38 -0.02 1.11 16 43 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.37 23.33 7.67 -92.71 -0.71 22.62 16 45 H 0.25 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -82.23 361.88 -0.42 -82.65 By element: Atomic # 1 Polarization: 29.72 SS G_CDS: -0.52 Total: 29.20 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: 6.24 Total: 4.07 kcal Atomic # 7 Polarization: -134.62 SS G_CDS: -5.60 Total: -140.22 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -1.25 Total: -26.73 kcal Atomic # 14 Polarization: 48.83 SS G_CDS: 2.03 Total: 50.85 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -1.32 Total: 0.18 kcal Total: -82.23 -0.42 -82.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565939188.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.346 kcal (2) G-P(sol) polarization free energy of solvation -82.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds