Wall clock time and date at job start Sat Apr 11 2020 05:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.52779 * 2 1 4 4 C 1.53073 * 109.61859 * 239.97167 * 2 1 3 5 5 C 1.53044 * 109.65739 * 178.83234 * 4 2 1 6 6 C 1.53184 * 109.31456 * 61.29902 * 5 4 2 7 7 N 1.46921 * 108.77705 * 305.36672 * 6 5 4 8 8 C 1.34776 * 120.63025 * 233.58546 * 7 6 5 9 9 O 1.21652 * 120.00069 * 185.84978 * 8 7 6 10 10 C 1.47182 * 120.00058 * 5.84814 * 8 7 6 11 11 C 1.35094 * 122.48633 * 173.96264 * 10 8 7 12 12 S 1.76186 * 108.21917 * 180.02562 * 11 10 8 13 13 C 1.76059 * 90.15858 * 0.02562 * 12 11 10 14 14 O 1.35493 * 125.18220 * 179.97438 * 13 12 11 15 15 N 1.29258 * 109.63969 * 359.72987 * 13 12 11 16 16 C 1.46931 * 118.73972 * 53.60693 * 7 6 5 17 17 H 1.09005 * 109.58288 * 66.32526 * 16 7 6 18 18 C 1.52996 * 109.58682 * 186.60474 * 16 7 6 19 19 C 1.52997 * 109.47360 * 65.80415 * 18 16 7 20 20 N 1.46493 * 109.47454 * 186.00593 * 19 18 16 21 21 C 1.36939 * 120.00290 * 180.02562 * 20 19 18 22 22 H 1.07998 * 119.99622 * 359.97438 * 21 20 19 23 23 C 1.38813 * 120.00310 * 179.97438 * 21 20 19 24 24 N 1.31623 * 119.99760 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00088 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47358 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46542 * 120.00055 * 25 23 21 28 28 H 1.48498 * 109.47038 * 240.00007 * 25 23 21 29 29 H 1.09000 * 109.46538 * 299.91693 * 1 2 3 30 30 H 1.08994 * 109.47695 * 59.91807 * 1 2 3 31 31 H 1.09000 * 109.47268 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.45260 * 58.74133 * 4 2 1 33 33 H 1.08998 * 109.34104 * 298.84765 * 4 2 1 34 34 H 1.09004 * 109.49439 * 301.34274 * 5 4 2 35 35 H 1.09005 * 109.52394 * 181.26908 * 5 4 2 36 36 H 1.08997 * 109.58861 * 185.57771 * 6 5 4 37 37 H 1.09004 * 109.58822 * 65.15296 * 6 5 4 38 38 H 1.08005 * 125.89024 * 0.02562 * 11 10 8 39 39 H 0.96699 * 113.99896 * 359.97438 * 14 13 12 40 40 H 1.09000 * 109.46869 * 185.80553 * 18 16 7 41 41 H 1.09008 * 109.47334 * 305.80366 * 18 16 7 42 42 H 1.08998 * 109.46959 * 306.00433 * 19 18 16 43 43 H 1.08999 * 109.47015 * 66.00249 * 19 18 16 44 44 H 0.97006 * 119.99715 * 0.02562 * 20 19 18 45 45 H 0.96998 * 119.99800 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0440 -0.7216 -1.2483 5 6 3.5741 -0.6967 -1.2640 6 6 4.1055 -1.4302 -0.0286 7 7 3.5045 -0.8321 1.1713 8 6 4.2807 -0.3917 2.1813 9 8 3.7707 0.0032 3.2127 10 6 5.7454 -0.3884 2.0363 11 6 6.5652 0.1505 2.9650 12 16 8.2271 -0.0497 2.4154 13 6 7.6535 -0.8548 0.9585 14 8 8.4447 -1.3357 -0.0307 15 7 6.3628 -0.9217 0.9787 16 6 2.0413 -0.7238 1.2496 17 1 1.6033 -1.7207 1.2994 18 6 1.6519 0.0705 2.4978 19 6 2.1388 1.5140 2.3563 20 7 1.8941 2.2368 3.6069 21 6 2.2497 3.5546 3.7169 22 1 2.7108 4.0610 2.8819 23 6 2.0173 4.2396 4.9017 24 7 1.4558 3.6222 5.9196 25 14 2.5030 6.0371 5.0520 26 1 3.1118 6.4937 3.7769 27 1 1.2969 6.8528 5.3442 28 1 3.4856 6.1938 6.1543 29 1 -0.3632 0.5126 0.8908 30 1 -0.3634 0.5151 -0.8892 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6635 -0.2216 -2.1390 33 1 1.6978 -1.7550 -1.2362 34 1 3.9213 0.3365 -1.2511 35 1 3.9373 -1.1912 -2.1650 36 1 5.1899 -1.3304 0.0173 37 1 3.8356 -2.4848 -0.0855 38 1 6.2553 0.6226 3.8856 39 1 9.3902 -1.2018 0.1217 40 1 0.5677 0.0621 2.6102 41 1 2.1117 -0.3836 3.3757 42 1 3.2066 1.5175 2.1377 43 1 1.5999 2.0012 1.5437 44 1 1.4803 1.7818 4.3570 45 1 1.2931 4.1010 6.7473 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001565939189.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:38 Heat of formation + Delta-G solvation = 35.946250 kcal Electronic energy + Delta-G solvation = -28808.303593 eV Core-core repulsion = 24955.705425 eV Total energy + Delta-G solvation = -3852.598168 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.08586 -39.64846 -38.03103 -37.22139 -34.85497 -33.52551 -32.58071 -30.74886 -30.22953 -28.46293 -26.52642 -25.73541 -24.68396 -23.29370 -22.07860 -21.88779 -21.00275 -20.51514 -19.46912 -18.46933 -17.56598 -16.73600 -16.30202 -16.06110 -15.87749 -15.36786 -15.16937 -14.72515 -14.59316 -14.09038 -14.07974 -13.40707 -13.28797 -13.05861 -12.96278 -12.86374 -12.64660 -12.51605 -12.25754 -12.06652 -11.74040 -11.61832 -11.15998 -11.03689 -10.87697 -10.85307 -10.59782 -10.55719 -10.14795 -10.07212 -9.82687 -9.75624 -9.50770 -9.10586 -8.84210 -8.63775 -8.55483 -8.17161 -6.60281 -5.56052 -2.80312 0.39641 0.55887 1.15084 1.90801 2.53486 3.26170 3.52445 3.52931 3.57717 3.60340 4.45722 4.74714 4.82182 4.94047 5.03849 5.05704 5.11273 5.20194 5.46492 5.50467 5.61166 5.64757 5.74188 5.75696 5.82918 5.84964 5.90097 6.04453 6.06923 6.16641 6.25548 6.26370 6.41070 6.46410 6.57797 6.64137 6.66403 6.78141 6.95493 7.19123 7.28049 7.40485 7.71340 7.86864 8.51605 8.64099 9.74245 10.40673 10.75503 11.67727 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008947 B = 0.004679 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3128.893547 B = 5983.107016 C = 8344.925992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 H 0.083 0.917 4 C -0.115 4.115 5 C -0.130 4.130 6 C 0.049 3.951 7 N -0.589 5.589 8 C 0.578 3.422 9 O -0.476 6.476 10 C 0.046 3.954 11 C -0.166 4.166 12 S 0.050 5.950 13 C 0.278 3.722 14 O -0.421 6.421 15 N -0.461 5.461 16 C 0.160 3.840 17 H 0.067 0.933 18 C -0.141 4.141 19 C 0.172 3.828 20 N -0.723 5.723 21 C -0.222 4.222 22 H 0.064 0.936 23 C -0.020 4.020 24 N -0.935 5.935 25 Si 0.900 3.100 26 H -0.283 1.283 27 H -0.294 1.294 28 H -0.294 1.294 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.167 0.833 37 H 0.053 0.947 38 H 0.200 0.800 39 H 0.418 0.582 40 H 0.054 0.946 41 H 0.110 0.890 42 H 0.019 0.981 43 H 0.001 0.999 44 H 0.382 0.618 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.358 -14.629 -14.905 24.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.126 4.126 3 H 0.101 0.899 4 C -0.153 4.153 5 C -0.168 4.168 6 C -0.074 4.074 7 N -0.322 5.322 8 C 0.362 3.638 9 O -0.350 6.350 10 C -0.082 4.082 11 C -0.306 4.306 12 S 0.297 5.703 13 C -0.041 4.041 14 O -0.220 6.220 15 N -0.193 5.193 16 C 0.057 3.943 17 H 0.085 0.915 18 C -0.178 4.178 19 C 0.044 3.956 20 N -0.366 5.366 21 C -0.354 4.354 22 H 0.082 0.918 23 C -0.215 4.215 24 N -0.585 5.585 25 Si 0.732 3.268 26 H -0.208 1.208 27 H -0.221 1.221 28 H -0.221 1.221 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.182 0.818 37 H 0.072 0.928 38 H 0.217 0.783 39 H 0.273 0.727 40 H 0.073 0.927 41 H 0.128 0.872 42 H 0.037 0.963 43 H 0.018 0.982 44 H 0.215 0.785 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 13.448 -14.434 -14.739 24.626 hybrid contribution -0.164 1.051 0.377 1.129 sum 13.284 -13.383 -14.362 23.703 Atomic orbital electron populations 1.21786 0.94493 1.01460 1.02415 1.21625 0.96028 1.00901 0.94076 0.89867 1.21629 0.95614 1.00345 0.97685 1.21854 0.95679 1.01286 0.97977 1.23386 1.05724 0.95357 0.82926 1.47782 1.06209 1.60091 1.18101 1.17110 0.83323 0.78939 0.84478 1.91049 1.70866 1.44804 1.28233 1.20419 0.96435 1.01555 0.89835 1.26892 0.91734 1.06303 1.05695 1.85379 1.09587 1.57672 1.17630 1.25904 0.90570 0.96714 0.90888 1.84704 1.22094 1.76201 1.39011 1.65943 1.04060 1.24767 1.24488 1.21313 0.78391 0.98577 0.96052 0.91532 1.22480 0.99916 0.97599 0.97808 1.20722 0.96568 0.89030 0.89248 1.42245 1.73443 1.09119 1.11761 1.19257 1.31478 0.87242 0.97387 0.91774 1.24662 1.02589 0.97825 0.96419 1.69683 1.49754 1.35410 1.03679 0.86193 0.77593 0.85840 0.77139 1.20833 1.22104 1.22120 0.91531 0.92767 0.93023 0.92189 0.92286 0.91932 0.91440 0.81825 0.92830 0.78292 0.72692 0.92710 0.87244 0.96315 0.98194 0.78457 0.93920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 8.98 37.16 0.33 -1.50 16 2 C -0.11 -1.49 1.99 -90.48 -0.18 -1.67 16 3 H 0.08 1.36 6.16 -51.93 -0.32 1.04 16 4 C -0.12 -1.32 5.17 -26.67 -0.14 -1.45 16 5 C -0.13 -1.50 6.08 -26.61 -0.16 -1.66 16 6 C 0.05 0.63 6.29 -3.72 -0.02 0.60 16 7 N -0.59 -9.01 2.93 -166.57 -0.49 -9.50 16 8 C 0.58 10.00 6.14 -12.63 -0.08 9.92 16 9 O -0.48 -9.90 10.66 5.23 0.06 -9.85 16 10 C 0.05 0.67 6.55 -84.60 -0.55 0.12 16 11 C -0.17 -2.19 10.84 29.61 0.32 -1.86 16 12 S 0.05 0.44 23.38 -107.50 -2.51 -2.08 16 13 C 0.28 2.64 8.91 51.68 0.46 3.10 16 14 O -0.42 -2.68 13.64 -18.17 -0.25 -2.92 16 15 N -0.46 -5.79 6.50 -11.34 -0.07 -5.87 16 16 C 0.16 2.45 2.66 -67.60 -0.18 2.27 16 17 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 18 C -0.14 -2.68 4.20 -26.73 -0.11 -2.80 16 19 C 0.17 3.93 4.39 -4.05 -0.02 3.91 16 20 N -0.72 -20.18 5.59 -59.92 -0.34 -20.51 16 21 C -0.22 -6.68 9.99 -15.06 -0.15 -6.83 16 22 H 0.06 1.90 7.83 -52.49 -0.41 1.49 16 23 C -0.02 -0.61 5.50 -17.43 -0.10 -0.70 16 24 N -0.93 -29.94 13.06 55.49 0.72 -29.22 16 25 Si 0.90 23.60 29.55 -169.99 -5.02 18.57 16 26 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 28 H -0.29 -7.69 7.11 56.52 0.40 -7.28 16 29 H 0.07 0.97 6.75 -51.93 -0.35 0.62 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.17 2.14 3.38 -98.70 -0.33 1.81 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.20 2.77 8.02 -52.48 -0.42 2.35 16 39 H 0.42 0.15 9.03 45.56 0.41 0.56 16 40 H 0.05 1.02 6.92 -51.93 -0.36 0.66 16 41 H 0.11 2.32 5.59 -53.69 -0.30 2.02 16 42 H 0.02 0.46 5.25 -51.93 -0.27 0.18 16 43 H 0.00 0.01 6.59 -51.93 -0.34 -0.33 16 44 H 0.38 11.32 7.67 -40.82 -0.31 11.00 16 45 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 360.95 15.07 5.44 5.44 Total: -1.00 -36.35 360.95 -8.57 -44.92 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -5.53 Total: 9.56 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -0.58 Total: 1.45 kcal Atomic # 7 Polarization: -64.92 SS G_CDS: -0.17 Total: -65.09 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -0.19 Total: -12.77 kcal Atomic # 14 Polarization: 23.60 SS G_CDS: -5.02 Total: 18.57 kcal Atomic # 16 Polarization: 0.44 SS G_CDS: -2.51 Total: -2.08 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.35 -8.57 -44.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565939189.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.865 kcal (2) G-P(sol) polarization free energy of solvation -36.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds