Wall clock time and date at job start Sat Apr 11 2020 05:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.52779 * 2 1 4 4 C 1.53073 * 109.61859 * 239.97167 * 2 1 3 5 5 C 1.53044 * 109.65739 * 178.83234 * 4 2 1 6 6 C 1.53184 * 109.31456 * 61.29902 * 5 4 2 7 7 N 1.46921 * 108.77705 * 305.36672 * 6 5 4 8 8 C 1.34776 * 120.63025 * 233.58546 * 7 6 5 9 9 O 1.21652 * 120.00069 * 185.84978 * 8 7 6 10 10 C 1.47182 * 120.00058 * 5.84814 * 8 7 6 11 11 C 1.35094 * 122.48633 * 173.96264 * 10 8 7 12 12 S 1.76186 * 108.21917 * 180.02562 * 11 10 8 13 13 C 1.76059 * 90.15858 * 0.02562 * 12 11 10 14 14 O 1.35493 * 125.18220 * 179.97438 * 13 12 11 15 15 N 1.29258 * 109.63969 * 359.72987 * 13 12 11 16 16 C 1.46931 * 118.73972 * 53.60693 * 7 6 5 17 17 H 1.09005 * 109.58288 * 66.32526 * 16 7 6 18 18 C 1.52996 * 109.58682 * 186.60474 * 16 7 6 19 19 C 1.52997 * 109.47360 * 65.80415 * 18 16 7 20 20 N 1.46493 * 109.47454 * 186.00593 * 19 18 16 21 21 C 1.36939 * 120.00290 * 180.02562 * 20 19 18 22 22 H 1.07998 * 119.99622 * 359.97438 * 21 20 19 23 23 C 1.38813 * 120.00310 * 179.97438 * 21 20 19 24 24 N 1.31623 * 119.99760 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00088 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47358 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46542 * 120.00055 * 25 23 21 28 28 H 1.48498 * 109.47038 * 240.00007 * 25 23 21 29 29 H 1.09000 * 109.46538 * 299.91693 * 1 2 3 30 30 H 1.08994 * 109.47695 * 59.91807 * 1 2 3 31 31 H 1.09000 * 109.47268 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.45260 * 58.74133 * 4 2 1 33 33 H 1.08998 * 109.34104 * 298.84765 * 4 2 1 34 34 H 1.09004 * 109.49439 * 301.34274 * 5 4 2 35 35 H 1.09005 * 109.52394 * 181.26908 * 5 4 2 36 36 H 1.08997 * 109.58861 * 185.57771 * 6 5 4 37 37 H 1.09004 * 109.58822 * 65.15296 * 6 5 4 38 38 H 1.08005 * 125.89024 * 0.02562 * 11 10 8 39 39 H 0.96699 * 113.99896 * 359.97438 * 14 13 12 40 40 H 1.09000 * 109.46869 * 185.80553 * 18 16 7 41 41 H 1.09008 * 109.47334 * 305.80366 * 18 16 7 42 42 H 1.08998 * 109.46959 * 306.00433 * 19 18 16 43 43 H 1.08999 * 109.47015 * 66.00249 * 19 18 16 44 44 H 0.97006 * 119.99715 * 0.02562 * 20 19 18 45 45 H 0.96998 * 119.99800 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0440 -0.7216 -1.2483 5 6 3.5741 -0.6967 -1.2640 6 6 4.1055 -1.4302 -0.0286 7 7 3.5045 -0.8321 1.1713 8 6 4.2807 -0.3917 2.1813 9 8 3.7707 0.0032 3.2127 10 6 5.7454 -0.3884 2.0363 11 6 6.5652 0.1505 2.9650 12 16 8.2271 -0.0497 2.4154 13 6 7.6535 -0.8548 0.9585 14 8 8.4447 -1.3357 -0.0307 15 7 6.3628 -0.9217 0.9787 16 6 2.0413 -0.7238 1.2496 17 1 1.6033 -1.7207 1.2994 18 6 1.6519 0.0705 2.4978 19 6 2.1388 1.5140 2.3563 20 7 1.8941 2.2368 3.6069 21 6 2.2497 3.5546 3.7169 22 1 2.7108 4.0610 2.8819 23 6 2.0173 4.2396 4.9017 24 7 1.4558 3.6222 5.9196 25 14 2.5030 6.0371 5.0520 26 1 3.1118 6.4937 3.7769 27 1 1.2969 6.8528 5.3442 28 1 3.4856 6.1938 6.1543 29 1 -0.3632 0.5126 0.8908 30 1 -0.3634 0.5151 -0.8892 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6635 -0.2216 -2.1390 33 1 1.6978 -1.7550 -1.2362 34 1 3.9213 0.3365 -1.2511 35 1 3.9373 -1.1912 -2.1650 36 1 5.1899 -1.3304 0.0173 37 1 3.8356 -2.4848 -0.0855 38 1 6.2553 0.6226 3.8856 39 1 9.3902 -1.2018 0.1217 40 1 0.5677 0.0621 2.6102 41 1 2.1117 -0.3836 3.3757 42 1 3.2066 1.5175 2.1377 43 1 1.5999 2.0012 1.5437 44 1 1.4803 1.7818 4.3570 45 1 1.2931 4.1010 6.7473 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565939189.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:37 Heat of formation + Delta-G solvation = 7.272101 kcal Electronic energy + Delta-G solvation = -28809.546997 eV Core-core repulsion = 24955.705425 eV Total energy + Delta-G solvation = -3853.841573 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.24626 -40.59061 -38.89058 -38.28401 -36.70077 -34.92898 -34.05418 -32.57604 -31.26434 -29.93275 -27.88055 -26.80803 -26.10496 -24.88039 -23.62870 -23.04051 -22.18004 -21.31259 -20.65713 -19.57476 -19.07883 -18.39799 -17.45197 -17.10091 -16.78597 -16.67384 -16.40775 -16.24096 -15.76956 -15.66366 -15.30319 -15.00974 -14.63395 -14.50430 -14.22100 -13.98250 -13.84454 -13.56039 -13.33388 -13.26945 -13.06727 -12.92476 -12.79457 -12.57489 -12.41470 -12.32250 -12.07890 -11.95507 -11.86326 -11.64216 -11.43085 -11.21198 -10.85259 -10.63444 -10.24003 -9.77860 -9.70060 -9.38471 -8.86982 -7.91266 -5.17898 -0.52349 -0.21841 0.24138 0.91317 1.42433 1.45263 1.55114 1.81171 2.16144 2.34480 2.56618 3.40432 3.49635 3.74931 3.82250 3.95092 4.06482 4.11877 4.18363 4.19068 4.31631 4.45226 4.56872 4.58694 4.65422 4.68825 4.77775 4.87012 4.90535 4.95043 5.03000 5.11307 5.19611 5.28314 5.34459 5.40049 5.43813 5.46110 5.55162 5.61175 5.79197 6.04715 6.30866 6.45276 6.60111 7.25279 7.35670 8.16895 8.41848 9.33445 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008947 B = 0.004679 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3128.893547 B = 5983.107016 C = 8344.925992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.103 4.103 3 H 0.052 0.948 4 C -0.108 4.108 5 C -0.125 4.125 6 C 0.044 3.956 7 N -0.587 5.587 8 C 0.566 3.434 9 O -0.528 6.528 10 C 0.034 3.966 11 C -0.200 4.200 12 S 0.138 5.862 13 C 0.290 3.710 14 O -0.414 6.414 15 N -0.485 5.485 16 C 0.162 3.838 17 H 0.087 0.913 18 C -0.127 4.127 19 C 0.183 3.817 20 N -0.735 5.735 21 C -0.236 4.236 22 H 0.064 0.936 23 C -0.079 4.079 24 N -0.971 5.971 25 Si 0.974 3.026 26 H -0.269 1.269 27 H -0.290 1.290 28 H -0.290 1.290 29 H 0.040 0.960 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.043 0.957 35 H 0.095 0.905 36 H 0.169 0.831 37 H 0.068 0.932 38 H 0.179 0.821 39 H 0.444 0.556 40 H 0.053 0.947 41 H 0.088 0.912 42 H 0.009 0.991 43 H -0.004 1.004 44 H 0.369 0.631 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.310 -15.383 -17.520 27.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 H 0.070 0.930 4 C -0.146 4.146 5 C -0.163 4.163 6 C -0.078 4.078 7 N -0.318 5.318 8 C 0.352 3.648 9 O -0.406 6.406 10 C -0.096 4.096 11 C -0.342 4.342 12 S 0.387 5.613 13 C -0.029 4.029 14 O -0.217 6.217 15 N -0.217 5.217 16 C 0.058 3.942 17 H 0.105 0.895 18 C -0.164 4.164 19 C 0.057 3.943 20 N -0.376 5.376 21 C -0.368 4.368 22 H 0.082 0.918 23 C -0.270 4.270 24 N -0.623 5.623 25 Si 0.802 3.198 26 H -0.194 1.194 27 H -0.217 1.217 28 H -0.217 1.217 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.062 0.938 35 H 0.113 0.887 36 H 0.184 0.816 37 H 0.086 0.914 38 H 0.197 0.803 39 H 0.305 0.695 40 H 0.072 0.928 41 H 0.106 0.894 42 H 0.027 0.973 43 H 0.014 0.986 44 H 0.200 0.800 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 15.472 -15.214 -17.436 27.836 hybrid contribution -0.600 1.220 1.134 1.771 sum 14.871 -13.994 -16.302 26.129 Atomic orbital electron populations 1.21756 0.93547 1.02662 1.01803 1.21565 0.96783 0.99234 0.94690 0.92996 1.21596 0.95413 1.01081 0.96473 1.21836 0.95769 1.00285 0.98435 1.23613 1.06058 0.96013 0.82100 1.47945 1.06034 1.59346 1.18520 1.17602 0.84845 0.78218 0.84134 1.91018 1.72220 1.47309 1.30075 1.20012 0.95237 1.03076 0.91230 1.26943 0.95277 1.06697 1.05286 1.84987 1.04810 1.55929 1.15566 1.25933 0.90365 0.95246 0.91373 1.84714 1.23992 1.75297 1.37723 1.65794 1.05660 1.26136 1.24109 1.21307 0.79044 0.98969 0.94849 0.89490 1.22242 0.99331 0.95554 0.99289 1.20725 0.95796 0.90821 0.86937 1.42449 1.73296 1.08907 1.12906 1.19589 1.31289 0.88319 0.97607 0.91804 1.25547 1.02904 1.02612 0.95967 1.69859 1.50999 1.37288 1.04130 0.85064 0.77201 0.79985 0.77501 1.19366 1.21660 1.21746 0.94111 0.91405 0.90880 0.90752 0.90441 0.93846 0.88686 0.81637 0.91365 0.80332 0.69537 0.92813 0.89436 0.97319 0.98629 0.79969 0.94122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 8.98 71.98 0.65 -2.80 16 2 C -0.10 -2.82 1.99 -10.70 -0.02 -2.84 16 3 H 0.05 1.74 6.16 -2.39 -0.01 1.73 16 4 C -0.11 -2.20 5.17 30.63 0.16 -2.04 16 5 C -0.13 -2.63 6.08 30.67 0.19 -2.44 16 6 C 0.04 1.06 6.29 86.36 0.54 1.61 16 7 N -0.59 -18.23 2.93 -799.14 -2.34 -20.57 16 8 C 0.57 20.70 6.14 86.59 0.53 21.23 16 9 O -0.53 -23.82 10.66 -4.20 -0.04 -23.86 16 10 C 0.03 1.02 6.55 40.51 0.27 1.28 16 11 C -0.20 -5.48 10.84 67.10 0.73 -4.75 16 12 S 0.14 2.15 23.38 -56.49 -1.32 0.83 16 13 C 0.29 4.82 8.91 130.62 1.16 5.99 16 14 O -0.41 -3.77 13.64 -87.94 -1.20 -4.97 16 15 N -0.48 -11.72 6.50 -304.23 -1.98 -13.70 16 16 C 0.16 5.01 2.66 44.97 0.12 5.13 16 17 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 18 C -0.13 -5.12 4.20 30.59 0.13 -4.99 16 19 C 0.18 8.90 4.39 86.38 0.38 9.28 16 20 N -0.73 -43.28 5.59 -343.48 -1.92 -45.20 16 21 C -0.24 -14.72 9.99 84.03 0.84 -13.88 16 22 H 0.06 3.90 7.83 -2.91 -0.02 3.87 16 23 C -0.08 -4.91 5.50 84.86 0.47 -4.44 16 24 N -0.97 -64.12 13.06 21.65 0.28 -63.84 16 25 Si 0.97 49.43 29.55 68.60 2.03 51.46 16 26 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 27 H -0.29 -14.45 7.11 99.48 0.71 -13.75 16 28 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 29 H 0.04 1.20 6.75 -2.39 -0.02 1.18 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 36 H 0.17 4.12 3.38 -94.73 -0.32 3.80 16 37 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 38 H 0.18 5.51 8.02 -2.91 -0.02 5.48 16 39 H 0.44 -1.63 9.03 -74.06 -0.67 -2.30 16 40 H 0.05 2.12 6.92 -2.39 -0.02 2.10 16 41 H 0.09 4.00 5.59 -30.41 -0.17 3.83 16 42 H 0.01 0.46 5.25 -2.39 -0.01 0.45 16 43 H 0.00 -0.19 6.59 -2.39 -0.02 -0.21 16 44 H 0.37 23.25 7.67 -92.70 -0.71 22.53 16 45 H 0.25 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -82.74 360.95 -1.16 -83.90 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: -0.80 Total: 29.62 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 6.13 Total: 6.33 kcal Atomic # 7 Polarization: -137.35 SS G_CDS: -5.96 Total: -143.31 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -1.24 Total: -28.83 kcal Atomic # 14 Polarization: 49.43 SS G_CDS: 2.03 Total: 51.46 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -1.32 Total: 0.83 kcal Total: -82.74 -1.16 -83.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565939189.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.170 kcal (2) G-P(sol) polarization free energy of solvation -82.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds