Wall clock time and date at job start Sat Apr 11 2020 05:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99714 * 2 1 4 4 C 1.50704 * 109.46925 * 179.97438 * 3 2 1 5 5 N 1.29437 * 124.80401 * 90.03818 * 4 3 2 6 6 C 1.30942 * 117.36293 * 179.69235 * 5 4 3 7 7 C 1.35667 * 114.18822 * 0.48673 * 6 5 4 8 8 C 1.46683 * 126.12641 * 179.82138 * 7 6 5 9 9 O 1.21688 * 120.00036 * 353.89377 * 8 7 6 10 10 N 1.34773 * 119.99861 * 173.88804 * 8 7 6 11 11 C 1.47492 * 127.03399 * 354.48740 * 10 8 7 12 12 C 1.54001 * 107.08286 * 205.47932 * 11 10 8 13 13 H 1.08996 * 110.32676 * 239.69962 * 12 11 10 14 14 C 1.53007 * 110.32586 * 117.58706 * 12 11 10 15 15 C 1.54617 * 105.13591 * 358.64058 * 12 11 10 16 16 H 1.09003 * 110.73783 * 96.54006 * 15 12 11 17 17 C 1.52999 * 110.73998 * 219.86192 * 15 12 11 18 18 N 1.46508 * 109.46962 * 184.99877 * 17 15 12 19 19 C 1.36934 * 119.99875 * 180.02562 * 18 17 15 20 20 H 1.08001 * 120.00131 * 0.02562 * 19 18 17 21 21 C 1.38808 * 120.00044 * 180.02562 * 19 18 17 22 22 N 1.31622 * 120.00118 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00126 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47063 * 89.99955 * 23 21 19 25 25 H 1.48497 * 109.47584 * 210.00411 * 23 21 19 26 26 H 1.48505 * 109.47230 * 330.00476 * 23 21 19 27 27 C 1.48121 * 127.03605 * 174.52477 * 10 8 7 28 28 S 1.70947 * 124.80601 * 269.99548 * 4 3 2 29 29 H 1.09003 * 109.46591 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47557 * 300.00156 * 1 2 3 31 31 H 1.09003 * 109.47138 * 60.00425 * 1 2 3 32 32 H 1.08992 * 109.47737 * 59.99654 * 3 2 1 33 33 H 1.09000 * 109.46866 * 299.99143 * 3 2 1 34 34 H 1.07999 * 122.90617 * 180.30392 * 6 5 4 35 35 H 1.08997 * 109.91233 * 86.12256 * 11 10 8 36 36 H 1.08999 * 109.91425 * 324.83888 * 11 10 8 37 37 H 1.08996 * 109.46710 * 62.83514 * 14 12 11 38 38 H 1.09004 * 109.46630 * 302.83278 * 14 12 11 39 39 H 1.08998 * 109.46678 * 182.83340 * 14 12 11 40 40 H 1.08998 * 109.47441 * 305.00334 * 17 15 12 41 41 H 1.09002 * 109.46917 * 65.00775 * 17 15 12 42 42 H 0.97000 * 119.99691 * 0.02562 * 18 17 15 43 43 H 0.97004 * 120.00004 * 179.97438 * 22 21 19 44 44 H 1.08998 * 110.66161 * 259.12042 * 27 10 8 45 45 H 1.08994 * 110.65929 * 22.23655 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2495 1.1287 -1.0619 6 6 5.5442 1.0324 -0.8918 7 6 5.9330 0.9961 0.4075 8 6 7.3123 0.8879 0.8948 9 8 8.2233 0.7096 0.1080 10 7 7.5706 0.9862 2.2139 11 6 6.6106 1.3119 3.2852 12 6 7.4173 1.9275 4.4436 13 1 7.2961 1.3315 5.3481 14 6 6.9710 3.3694 4.6947 15 6 8.8895 1.8952 3.9723 16 1 9.1788 2.8549 3.5439 17 6 9.8193 1.5128 5.1256 18 7 11.2123 1.6065 4.6814 19 6 12.2290 1.3085 5.5489 20 1 12.0041 1.0041 6.5604 21 6 13.5488 1.3977 5.1283 22 7 14.5261 1.1109 5.9619 23 14 13.9380 1.9236 3.3786 24 1 14.0816 3.4007 3.3260 25 1 15.2061 1.2870 2.9407 26 1 12.8353 1.5012 2.4779 27 6 8.8767 0.7899 2.8843 28 16 4.4847 1.1099 1.4047 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8465 0.8899 33 1 1.6886 1.8463 -0.8901 34 1 6.2420 0.9829 -1.7146 35 1 6.1093 0.4049 3.6229 36 1 5.8771 2.0309 2.9204 37 1 5.9251 3.3778 5.0014 38 1 7.0860 3.9499 3.7793 39 1 7.5841 3.8075 5.4822 40 1 9.6584 2.1921 5.9627 41 1 9.6064 0.4912 5.4405 42 1 11.4143 1.8795 3.7728 43 1 15.4484 1.1729 5.6678 44 1 8.9299 -0.1983 3.3411 45 1 9.6959 0.9336 2.1799 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569855151.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:09 Heat of formation + Delta-G solvation = -10.981065 kcal Electronic energy + Delta-G solvation = -26762.733037 eV Core-core repulsion = 22908.099948 eV Total energy + Delta-G solvation = -3854.633089 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.57141 -39.91716 -38.37091 -37.86996 -34.92396 -33.06725 -32.01216 -31.56038 -29.86709 -28.79300 -26.91941 -26.53562 -25.82341 -24.29318 -23.09058 -21.64100 -21.13677 -20.22259 -19.19137 -18.80411 -17.60801 -17.15869 -16.99818 -16.52095 -16.05936 -15.96532 -15.45181 -15.04411 -14.73212 -14.53965 -14.26095 -14.10271 -13.81487 -13.47374 -13.34767 -13.17016 -12.95836 -12.75856 -12.53262 -12.41231 -12.14055 -12.03159 -11.90648 -11.57832 -11.48017 -10.97162 -10.72337 -10.62280 -10.51237 -10.44771 -10.25194 -10.13289 -9.93881 -9.83756 -9.59331 -9.42289 -8.92339 -8.81278 -7.25540 -5.77566 -3.13792 -0.19742 0.75034 1.18411 2.05260 2.67779 2.90925 3.17929 3.39738 3.43991 3.48011 3.81287 4.17987 4.33565 4.33707 4.59483 4.61145 4.67588 4.71070 4.76117 4.80336 4.86381 4.93712 5.04195 5.15135 5.19108 5.31785 5.34141 5.51300 5.56525 5.60955 5.64431 5.70706 5.83942 5.89395 5.97047 6.03764 6.10250 6.27756 6.43005 6.56541 6.66562 7.18468 7.31148 7.86479 7.97129 8.41060 9.19585 9.92174 10.10947 11.40533 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023233 B = 0.002427 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.898212 B =11535.733137 C =12341.211795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.138 3.862 4 C 0.029 3.971 5 N -0.460 5.460 6 C 0.116 3.884 7 C -0.280 4.280 8 C 0.610 3.390 9 O -0.521 6.521 10 N -0.616 5.616 11 C 0.093 3.907 12 C -0.094 4.094 13 H 0.094 0.906 14 C -0.144 4.144 15 C -0.107 4.107 16 H 0.085 0.915 17 C 0.170 3.830 18 N -0.756 5.756 19 C -0.246 4.246 20 H 0.090 0.910 21 C 0.006 3.994 22 N -0.933 5.933 23 Si 0.882 3.118 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.275 1.275 27 C 0.114 3.886 28 S 0.212 5.788 29 H 0.092 0.908 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.191 0.809 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.067 0.933 40 H 0.034 0.966 41 H 0.031 0.969 42 H 0.361 0.639 43 H 0.260 0.740 44 H 0.083 0.917 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.820 2.228 -8.669 33.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.058 3.942 4 C -0.246 4.246 5 N -0.176 5.176 6 C -0.042 4.042 7 C -0.404 4.404 8 C 0.397 3.603 9 O -0.399 6.399 10 N -0.350 5.350 11 C -0.032 4.032 12 C -0.114 4.114 13 H 0.113 0.887 14 C -0.201 4.201 15 C -0.127 4.127 16 H 0.104 0.896 17 C 0.042 3.958 18 N -0.402 5.402 19 C -0.376 4.376 20 H 0.108 0.892 21 C -0.190 4.190 22 N -0.581 5.581 23 Si 0.712 3.288 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.202 1.202 27 C -0.008 4.008 28 S 0.469 5.531 29 H 0.110 0.890 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.208 0.792 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.051 0.949 41 H 0.049 0.951 42 H 0.194 0.806 43 H 0.070 0.930 44 H 0.101 0.899 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -31.670 1.909 -8.397 32.820 hybrid contribution 0.779 0.496 -1.992 2.196 sum -30.891 2.405 -10.389 32.680 Atomic orbital electron populations 1.22829 0.79760 1.03493 1.00432 1.87971 1.20496 1.26081 1.95540 1.20819 0.84414 0.86251 1.02697 1.27182 1.00848 1.03401 0.93123 1.66204 1.04772 1.14993 1.31612 1.22187 0.90689 0.95796 0.95560 1.25889 0.98083 1.18466 0.97994 1.16250 0.85830 0.77313 0.80868 1.90882 1.44958 1.49930 1.54139 1.48666 1.12569 1.68892 1.04829 1.22458 0.92221 1.00242 0.88248 1.22053 0.94405 0.97651 0.97288 0.88729 1.21866 1.01082 0.94906 1.02270 1.22691 0.94184 0.99179 0.96608 0.89626 1.20604 0.83651 0.98430 0.93111 1.42727 1.01221 1.83815 1.12447 1.19022 0.85028 1.38614 0.94890 0.89173 1.24669 0.95503 1.01448 0.97388 1.69702 0.98816 1.55016 1.34544 0.86583 0.77680 0.78524 0.85972 1.21083 1.21671 1.20151 1.22716 0.84344 0.99352 0.94348 1.84097 0.95716 1.63686 1.09563 0.88985 0.93549 0.93509 0.90617 0.89859 0.79240 0.90638 0.90611 0.92461 0.92651 0.91411 0.94858 0.95137 0.80597 0.93036 0.89882 0.89241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.38 -3.13 10.69 -35.23 -0.38 -3.51 16 3 C 0.14 0.94 6.51 36.01 0.23 1.17 16 4 C 0.03 0.27 7.02 -13.29 -0.09 0.18 16 5 N -0.46 -5.36 10.51 -11.50 -0.12 -5.49 16 6 C 0.12 1.38 11.10 -18.85 -0.21 1.17 16 7 C -0.28 -3.39 6.37 -37.09 -0.24 -3.62 16 8 C 0.61 9.03 7.85 -12.85 -0.10 8.92 16 9 O -0.52 -9.58 17.06 5.20 0.09 -9.49 16 10 N -0.62 -8.19 3.29 -171.19 -0.56 -8.76 16 11 C 0.09 0.91 5.09 -2.98 -0.02 0.89 16 12 C -0.09 -0.96 3.17 -89.24 -0.28 -1.24 16 13 H 0.09 0.87 7.85 -51.93 -0.41 0.47 16 14 C -0.14 -1.27 8.89 37.16 0.33 -0.94 16 15 C -0.11 -1.50 2.63 -88.65 -0.23 -1.73 16 16 H 0.09 1.27 7.86 -51.93 -0.41 0.86 16 17 C 0.17 3.00 5.58 -4.04 -0.02 2.97 16 18 N -0.76 -17.45 5.33 -59.91 -0.32 -17.77 16 19 C -0.25 -6.86 10.47 -15.06 -0.16 -7.02 16 20 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 21 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 22 N -0.93 -29.30 13.97 55.49 0.78 -28.53 16 23 Si 0.88 22.42 27.74 -169.99 -4.71 17.70 16 24 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 26 H -0.28 -6.67 6.52 56.52 0.37 -6.30 16 27 C 0.11 1.70 6.49 -2.04 -0.01 1.68 16 28 S 0.21 1.85 19.05 -107.50 -2.05 -0.20 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.05 0.16 8.14 -51.93 -0.42 -0.27 16 32 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.19 2.10 8.06 -52.49 -0.42 1.67 16 35 H 0.08 0.63 8.07 -51.93 -0.42 0.21 16 36 H 0.08 0.64 5.28 -41.24 -0.22 0.42 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.03 0.54 8.00 -51.93 -0.42 0.13 16 42 H 0.36 8.30 5.53 -40.82 -0.23 8.08 16 43 H 0.26 7.78 8.31 -40.82 -0.34 7.45 16 44 H 0.08 1.22 7.94 -51.93 -0.41 0.81 16 45 H 0.09 1.56 7.81 -51.93 -0.41 1.15 16 LS Contribution 382.09 15.07 5.76 5.76 Total: -1.00 -35.42 382.09 -8.03 -43.45 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -6.73 Total: 3.06 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: 0.22 Total: 3.76 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: -0.23 Total: -60.54 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -0.29 Total: -13.00 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.71 Total: 17.70 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -2.05 Total: -0.20 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.42 -8.03 -43.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569855151.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.473 kcal (2) G-P(sol) polarization free energy of solvation -35.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds