Wall clock time and date at job start Sat Apr 11 2020 05:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42897 * 113.99779 * 2 1 4 4 C 1.50695 * 109.46871 * 179.97438 * 3 2 1 5 5 N 1.29435 * 124.80841 * 89.96186 * 4 3 2 6 6 C 1.30935 * 117.36799 * 179.76685 * 5 4 3 7 7 C 1.35665 * 114.19157 * 0.48068 * 6 5 4 8 8 C 1.46682 * 126.13137 * 179.82623 * 7 6 5 9 9 O 1.21681 * 119.99905 * 359.71390 * 8 7 6 10 10 N 1.34781 * 119.99972 * 179.70972 * 8 7 6 11 11 C 1.47030 * 125.64714 * 359.97438 * 10 8 7 12 12 C 1.54320 * 107.26874 * 178.97208 * 11 10 8 13 13 H 1.08994 * 110.71985 * 219.26824 * 12 11 10 14 14 C 1.53006 * 110.71957 * 96.17026 * 12 11 10 15 15 C 1.55157 * 102.94402 * 337.81099 * 12 11 10 16 16 H 1.09006 * 111.00185 * 277.42651 * 15 12 11 17 17 C 1.53003 * 111.00537 * 153.57656 * 15 12 11 18 18 N 1.46499 * 109.47113 * 174.99850 * 17 15 12 19 19 C 1.36937 * 119.99908 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00168 * 0.02562 * 19 18 17 21 21 C 1.38814 * 119.99763 * 179.97438 * 19 18 17 22 22 N 1.31618 * 120.00202 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99770 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47452 * 59.99996 * 23 21 19 25 25 H 1.48504 * 109.47181 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47141 * 300.00083 * 23 21 19 27 27 C 1.47417 * 125.64806 * 180.02562 * 10 8 7 28 28 S 1.70958 * 124.80537 * 269.99574 * 4 3 2 29 29 H 1.08994 * 109.47180 * 300.00079 * 1 2 3 30 30 H 1.09000 * 109.47087 * 60.00455 * 1 2 3 31 31 H 1.09001 * 109.46718 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47418 * 59.99743 * 3 2 1 33 33 H 1.08999 * 109.47337 * 299.99582 * 3 2 1 34 34 H 1.08000 * 122.90939 * 180.30101 * 6 5 4 35 35 H 1.09000 * 109.87901 * 59.55702 * 11 10 8 36 36 H 1.08996 * 109.88311 * 298.39286 * 11 10 8 37 37 H 1.09001 * 109.47002 * 61.45061 * 14 12 11 38 38 H 1.08993 * 109.46955 * 181.45498 * 14 12 11 39 39 H 1.09000 * 109.47050 * 301.45327 * 14 12 11 40 40 H 1.09001 * 109.47012 * 294.99439 * 17 15 12 41 41 H 1.08997 * 109.47140 * 54.99695 * 17 15 12 42 42 H 0.96999 * 120.00147 * 359.97438 * 18 17 15 43 43 H 0.96995 * 119.99823 * 179.97438 * 22 21 19 44 44 H 1.08996 * 110.37128 * 322.93529 * 27 10 8 45 45 H 1.09006 * 110.36684 * 85.14700 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2494 1.1272 -1.0618 6 6 5.5440 1.0295 -0.8917 7 6 5.9329 0.9937 0.4075 8 6 7.3121 0.8845 0.8948 9 8 8.2331 0.8111 0.1030 10 7 7.5592 0.8655 2.2196 11 6 6.5456 0.9470 3.2816 12 6 7.2886 0.8619 4.6315 13 1 6.7267 0.2575 5.3435 14 6 7.5467 2.2603 5.1964 15 6 8.6235 0.1689 4.2504 16 1 8.5021 -0.9133 4.2025 17 6 9.7379 0.5508 5.2267 18 7 10.9480 -0.2113 4.9088 19 6 12.0836 -0.0350 5.6535 20 1 12.0870 0.6656 6.4754 21 6 13.2300 -0.7576 5.3527 22 7 13.2254 -1.6126 4.3520 23 14 14.7788 -0.5177 6.3689 24 1 14.4993 -0.8620 7.7862 25 1 15.8544 -1.3990 5.8477 26 1 15.2143 0.8993 6.2805 27 6 8.8906 0.7607 2.8438 28 16 4.4847 1.1098 1.4048 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 6.2417 0.9788 -1.7145 35 1 5.8458 0.1163 3.1906 36 1 6.0109 1.8942 3.2118 37 1 6.5953 2.7619 5.3734 38 1 8.0941 2.1774 6.1353 39 1 8.1346 2.8376 4.4828 40 1 9.9470 1.6171 5.1403 41 1 9.4225 0.3238 6.2450 42 1 10.9448 -0.8409 4.1709 43 1 14.0265 -2.1172 4.1416 44 1 9.5289 0.0923 2.2661 45 1 9.3498 1.7459 2.9258 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569855152.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:12 Heat of formation + Delta-G solvation = -14.940037 kcal Electronic energy + Delta-G solvation = -26721.542333 eV Core-core repulsion = 22866.737570 eV Total energy + Delta-G solvation = -3854.804763 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.52475 -39.89666 -38.32960 -37.82520 -34.75119 -32.99824 -31.88708 -31.21109 -29.51475 -28.56542 -26.92123 -26.55752 -25.58809 -24.26650 -23.28812 -21.91497 -21.36345 -19.41904 -19.04108 -18.70080 -17.23149 -17.10424 -16.77928 -16.36373 -16.14045 -15.94027 -15.34018 -15.11284 -14.75808 -14.53345 -14.24943 -14.00904 -13.62764 -13.34968 -13.14787 -13.04087 -12.87186 -12.62905 -12.47774 -12.37703 -12.00868 -11.97041 -11.83688 -11.58917 -11.07849 -10.84481 -10.67630 -10.48523 -10.42438 -10.37583 -10.16586 -10.08290 -9.84831 -9.77295 -9.67243 -9.36054 -8.87349 -8.66599 -6.93228 -5.75616 -3.05279 -0.11834 0.83189 1.26164 2.13102 2.80860 3.01409 3.24256 3.44680 3.48937 3.50419 3.87398 4.26648 4.39168 4.40438 4.57285 4.74467 4.76063 4.76734 4.81873 4.85358 4.91099 5.02308 5.17801 5.19158 5.26991 5.34900 5.45177 5.58773 5.71259 5.76298 5.78495 5.90535 5.98395 6.08868 6.13353 6.23782 6.31921 6.40028 6.47994 6.65657 6.78799 7.26111 7.39275 7.69205 7.98125 8.42473 9.53612 10.10349 10.44353 11.46906 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024353 B = 0.002233 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.476760 B =12535.153689 C =13121.070200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.138 3.862 4 C 0.026 3.974 5 N -0.461 5.461 6 C 0.114 3.886 7 C -0.278 4.278 8 C 0.605 3.395 9 O -0.520 6.520 10 N -0.610 5.610 11 C 0.090 3.910 12 C -0.091 4.091 13 H 0.093 0.907 14 C -0.146 4.146 15 C -0.102 4.102 16 H 0.088 0.912 17 C 0.166 3.834 18 N -0.733 5.733 19 C -0.242 4.242 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.931 5.931 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.118 3.882 28 S 0.211 5.789 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.191 0.809 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.053 0.947 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.026 0.974 41 H 0.025 0.975 42 H 0.384 0.616 43 H 0.256 0.744 44 H 0.087 0.913 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.400 8.001 -4.837 29.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.059 3.941 4 C -0.248 4.248 5 N -0.176 5.176 6 C -0.044 4.044 7 C -0.402 4.402 8 C 0.391 3.609 9 O -0.398 6.398 10 N -0.343 5.343 11 C -0.034 4.034 12 C -0.110 4.110 13 H 0.111 0.889 14 C -0.203 4.203 15 C -0.121 4.121 16 H 0.106 0.894 17 C 0.038 3.962 18 N -0.378 5.378 19 C -0.373 4.373 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.739 3.261 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.003 4.003 28 S 0.468 5.532 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.208 0.792 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.044 0.956 41 H 0.042 0.958 42 H 0.218 0.782 43 H 0.066 0.934 44 H 0.106 0.894 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -28.232 7.891 -4.642 29.679 hybrid contribution 1.202 -0.016 -0.515 1.308 sum -27.029 7.875 -5.157 28.622 Atomic orbital electron populations 1.22826 0.79819 1.03473 1.00391 1.87977 1.20447 1.26120 1.95530 1.20811 0.84483 0.86216 1.02619 1.27173 1.00827 1.03604 0.93220 1.66193 1.04801 1.14946 1.31664 1.22178 0.90652 0.95972 0.95589 1.25918 0.98118 1.18190 0.97966 1.16285 0.85929 0.77486 0.81178 1.90886 1.44259 1.50437 1.54199 1.48385 1.09886 1.71915 1.04129 1.22332 0.91417 1.01528 0.88154 1.22157 0.96333 0.98240 0.94307 0.88864 1.21866 1.01485 0.95018 1.01935 1.22655 0.94717 1.00431 0.94330 0.89414 1.20629 0.85789 0.95214 0.94546 1.42376 1.07724 1.49035 1.38638 1.19143 0.89222 1.19226 1.09756 0.91217 1.24757 0.98186 0.99272 0.98682 1.69647 1.28669 1.29070 1.30569 0.86268 0.83099 0.77311 0.79472 1.21292 1.21699 1.21267 1.22412 0.82731 1.02023 0.93102 1.84134 0.95851 1.63696 1.09472 0.93587 0.93530 0.89003 0.90676 0.89916 0.79227 0.90957 0.90839 0.92760 0.91124 0.92229 0.95627 0.95757 0.78238 0.93397 0.89435 0.90621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.38 -3.31 10.69 -35.23 -0.38 -3.69 16 3 C 0.14 1.00 6.51 36.00 0.23 1.24 16 4 C 0.03 0.26 7.02 -13.29 -0.09 0.17 16 5 N -0.46 -5.61 10.51 -11.50 -0.12 -5.73 16 6 C 0.11 1.43 11.09 -18.85 -0.21 1.22 16 7 C -0.28 -3.54 6.40 -37.09 -0.24 -3.78 16 8 C 0.60 9.41 7.82 -12.85 -0.10 9.31 16 9 O -0.52 -9.99 17.12 5.21 0.09 -9.90 16 10 N -0.61 -8.64 3.33 -172.06 -0.57 -9.22 16 11 C 0.09 0.95 4.77 -3.06 -0.01 0.94 16 12 C -0.09 -0.99 3.47 -88.78 -0.31 -1.30 16 13 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 14 C -0.15 -1.49 7.91 37.16 0.29 -1.19 16 15 C -0.10 -1.53 2.91 -88.46 -0.26 -1.79 16 16 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 17 C 0.17 3.09 4.54 -4.04 -0.02 3.07 16 18 N -0.73 -18.08 5.55 -59.91 -0.33 -18.41 16 19 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 20 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -28.31 13.06 55.49 0.72 -27.59 16 23 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 C 0.12 1.91 6.00 -2.53 -0.02 1.90 16 28 S 0.21 1.96 18.65 -107.50 -2.00 -0.05 16 29 H 0.05 0.15 8.14 -51.93 -0.42 -0.28 16 30 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.19 2.21 8.06 -52.49 -0.42 1.79 16 35 H 0.07 0.69 6.87 -51.93 -0.36 0.33 16 36 H 0.07 0.66 6.73 -51.93 -0.35 0.31 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.76 7.12 -51.93 -0.37 0.39 16 39 H 0.06 0.67 7.35 -51.93 -0.38 0.29 16 40 H 0.03 0.48 6.94 -51.93 -0.36 0.12 16 41 H 0.02 0.45 8.05 -51.93 -0.42 0.04 16 42 H 0.38 10.09 7.67 -40.82 -0.31 9.78 16 43 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.09 1.65 8.04 -51.93 -0.42 1.23 16 45 H 0.08 1.25 7.49 -51.93 -0.39 0.86 16 LS Contribution 380.28 15.07 5.73 5.73 Total: -1.00 -34.54 380.28 -8.45 -42.99 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -6.71 Total: 4.73 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: 0.14 Total: 3.75 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: -0.30 Total: -60.95 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.29 Total: -13.58 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.00 Total: -0.05 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.54 -8.45 -42.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569855152.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.047 kcal (2) G-P(sol) polarization free energy of solvation -34.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds