Wall clock time and date at job start Sat Apr 11 2020 05:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47264 * 2 1 4 4 O 1.42902 * 109.47148 * 179.97438 * 3 2 1 5 5 C 1.42905 * 114.00020 * 180.02562 * 4 3 2 6 6 C 1.50691 * 109.47233 * 180.02562 * 5 4 3 7 7 O 1.21285 * 120.00230 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00226 * 179.97438 * 6 5 4 9 9 C 1.47062 * 120.80029 * 179.97438 * 8 6 5 10 10 C 1.53295 * 108.60784 * 115.31048 * 9 8 6 11 11 C 1.50992 * 108.95790 * 45.06357 * 10 9 8 12 12 S 1.75959 * 126.02852 * 162.31687 * 11 10 9 13 13 C 1.70908 * 90.30364 * 179.63406 * 12 11 10 14 14 C 1.50706 * 124.92348 * 180.08570 * 13 12 11 15 15 N 1.46498 * 109.46936 * 270.00005 * 14 13 12 16 16 C 1.36937 * 119.99954 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99636 * 359.97438 * 16 15 14 18 18 C 1.38809 * 120.00180 * 179.97438 * 16 15 14 19 19 N 1.31623 * 120.00121 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 120.00065 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47144 * 89.99736 * 20 18 16 22 22 H 1.48491 * 109.47054 * 209.99927 * 20 18 16 23 23 H 1.48494 * 109.47036 * 330.00094 * 20 18 16 24 24 N 1.28677 * 110.14692 * 0.06496 * 13 12 11 25 25 C 1.32432 * 117.82620 * 0.07915 * 24 13 12 26 26 C 1.47032 * 120.79813 * 0.02647 * 8 6 5 27 27 H 1.08999 * 109.47303 * 60.00066 * 1 2 3 28 28 H 1.09005 * 109.47333 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47199 * 300.00179 * 1 2 3 30 30 H 1.08998 * 109.47603 * 239.99833 * 2 1 3 31 31 H 1.09007 * 109.46990 * 120.00091 * 2 1 3 32 32 H 1.09004 * 109.47159 * 59.99797 * 3 2 1 33 33 H 1.09007 * 109.47192 * 299.99967 * 3 2 1 34 34 H 1.09004 * 109.47227 * 59.99520 * 5 4 3 35 35 H 1.09003 * 109.46774 * 300.00266 * 5 4 3 36 36 H 1.09000 * 109.61084 * 355.58151 * 9 8 6 37 37 H 1.08993 * 109.62093 * 235.05151 * 9 8 6 38 38 H 1.08995 * 109.56075 * 285.21909 * 10 9 8 39 39 H 1.09002 * 109.55673 * 164.90458 * 10 9 8 40 40 H 1.08997 * 109.47196 * 30.00065 * 14 13 12 41 41 H 1.08993 * 109.46898 * 150.00160 * 14 13 12 42 42 H 0.97001 * 120.00055 * 0.02562 * 15 14 13 43 43 H 0.96992 * 120.00124 * 180.02562 * 19 18 16 44 44 H 1.08991 * 109.82279 * 105.66759 * 26 8 6 45 45 H 1.09007 * 109.80660 * 344.76649 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 8 3.4690 1.4424 0.0006 5 6 4.0502 2.7479 0.0012 6 6 5.5524 2.6289 0.0012 7 8 6.0741 1.5340 0.0012 8 7 6.3165 3.7393 0.0012 9 6 7.7840 3.6436 0.0017 10 6 8.3129 4.2312 -1.3115 11 6 7.5967 5.5307 -1.5911 12 16 8.1259 6.7852 -2.7058 13 6 6.7468 7.7194 -2.3235 14 6 6.4266 9.0676 -2.9161 15 7 7.0220 10.1190 -2.0877 16 6 6.8622 11.4347 -2.4320 17 1 6.2975 11.6972 -3.3144 18 6 7.4260 12.4309 -1.6469 19 7 7.2728 13.6956 -1.9780 20 14 8.4021 11.9769 -0.1202 21 1 9.8313 11.7977 -0.4816 22 1 8.2783 13.0610 0.8870 23 1 7.8727 10.7110 0.4474 24 7 6.0213 7.1046 -1.4566 25 6 6.4381 5.9226 -1.0285 26 6 5.7027 5.0754 0.0019 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.7282 3.2886 0.8912 35 1 3.7289 3.2891 -0.8887 36 1 8.0824 2.5982 0.0812 37 1 8.1872 4.2068 0.8433 38 1 8.1282 3.5304 -2.1256 39 1 9.3835 4.4163 -1.2234 40 1 6.8331 9.1265 -3.9257 41 1 5.3454 9.2014 -2.9513 42 1 7.5295 9.8831 -1.2954 43 1 7.6670 14.3917 -1.4296 44 1 5.8005 5.5265 0.9892 45 1 4.6492 4.9981 -0.2672 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001657083212.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:23 Heat of formation + Delta-G solvation = -18.799145 kcal Electronic energy + Delta-G solvation = -26314.539132 eV Core-core repulsion = 22459.567025 eV Total energy + Delta-G solvation = -3854.972107 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.83417 -39.56188 -38.17164 -36.60595 -34.91680 -34.11092 -32.92639 -31.76840 -30.19346 -28.90010 -27.26572 -26.41273 -25.60719 -23.66330 -22.97508 -21.99673 -21.73158 -20.03089 -18.52331 -18.38095 -17.69871 -17.34455 -16.93408 -16.84189 -16.07310 -15.81365 -15.25221 -14.96199 -14.87279 -14.52465 -14.31824 -13.98438 -13.79951 -13.75381 -13.23170 -13.15934 -12.91287 -12.74486 -12.55824 -12.49550 -12.42571 -12.36116 -12.04043 -11.67860 -11.35980 -11.31948 -11.29372 -11.22350 -10.94537 -10.27431 -10.11261 -10.10171 -9.69865 -9.51568 -9.26062 -9.08390 -9.02246 -8.63875 -7.38935 -5.85898 -3.24110 0.68827 1.34234 1.79847 2.18281 2.27180 2.70263 3.31178 3.32264 3.35945 3.40054 3.90328 4.11902 4.48796 4.51556 4.51961 4.56721 4.60343 4.69644 4.73200 4.84856 4.88676 4.89744 5.02893 5.05043 5.06341 5.08929 5.19859 5.29588 5.41301 5.42165 5.49100 5.55017 5.57549 5.61667 5.70218 5.78575 5.94968 5.99376 6.25789 6.32089 6.62890 6.92901 7.74781 7.80671 7.85238 8.31263 9.07023 9.79507 9.97363 11.31573 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015522 B = 0.002324 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.431694 B =12044.394378 C =12888.711009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.059 3.941 4 O -0.365 6.365 5 C 0.044 3.956 6 C 0.524 3.476 7 O -0.517 6.517 8 N -0.612 5.612 9 C 0.118 3.882 10 C -0.054 4.054 11 C -0.233 4.233 12 S 0.139 5.861 13 C 0.068 3.932 14 C 0.229 3.771 15 N -0.746 5.746 16 C -0.249 4.249 17 H 0.095 0.905 18 C 0.012 3.988 19 N -0.928 5.928 20 Si 0.881 3.119 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.277 1.277 24 N -0.462 5.462 25 C 0.043 3.957 26 C 0.192 3.808 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.052 0.948 41 H 0.062 0.938 42 H 0.364 0.636 43 H 0.261 0.739 44 H 0.095 0.905 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.224 -26.217 3.837 27.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.018 4.018 4 O -0.283 6.283 5 C -0.036 4.036 6 C 0.312 3.688 7 O -0.391 6.391 8 N -0.348 5.348 9 C -0.006 4.006 10 C -0.095 4.095 11 C -0.355 4.355 12 S 0.398 5.602 13 C -0.211 4.211 14 C 0.099 3.901 15 N -0.394 5.394 16 C -0.379 4.379 17 H 0.113 0.887 18 C -0.185 4.185 19 N -0.575 5.575 20 Si 0.711 3.289 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.204 1.204 24 N -0.176 5.176 25 C -0.091 4.091 26 C 0.066 3.934 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.123 0.877 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.110 0.890 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.196 0.804 43 H 0.072 0.928 44 H 0.113 0.887 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.543 -26.347 3.169 27.110 hybrid contribution 0.092 -0.048 1.670 1.674 sum -5.451 -26.395 4.839 27.383 Atomic orbital electron populations 1.21702 0.94573 1.02356 1.02116 1.21446 0.95684 0.95312 1.03631 1.22669 0.80212 0.98401 1.00504 1.87986 1.19800 1.25083 1.95481 1.22250 0.91330 0.87109 1.02931 1.20178 0.88721 0.83776 0.76142 1.90725 1.74444 1.25820 1.48102 1.48009 1.07077 1.05512 1.74233 1.21664 0.78610 1.03406 0.96921 1.20496 0.99353 0.91036 0.98578 1.25894 1.01263 1.02551 1.05816 1.84029 1.26346 1.09814 1.40053 1.27366 0.93938 1.02059 0.97770 1.19307 0.98715 0.78836 0.93210 1.42612 1.64571 1.02486 1.29694 1.18989 1.29423 0.80047 1.09425 0.88740 1.24629 1.00341 0.94976 0.98556 1.69688 1.49141 0.98422 1.40271 0.86594 0.80612 0.77500 0.84181 1.20849 1.21442 1.20367 1.65782 1.32933 1.07109 1.11819 1.20825 0.94382 0.92806 1.01062 1.20285 0.96399 0.79891 0.96807 0.92430 0.91926 0.92462 0.90975 0.90987 0.92988 0.92969 0.89891 0.89923 0.87691 0.90195 0.89686 0.89012 0.93000 0.92014 0.80351 0.92848 0.88697 0.87952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.91 37.15 0.37 -0.38 16 2 C -0.12 -0.84 6.30 -26.74 -0.17 -1.01 16 3 C 0.06 0.44 5.94 37.16 0.22 0.66 16 4 O -0.37 -3.94 9.88 -55.14 -0.54 -4.49 16 5 C 0.04 0.39 4.82 36.00 0.17 0.56 16 6 C 0.52 5.98 7.78 -10.99 -0.09 5.90 16 7 O -0.52 -7.78 15.92 -14.36 -0.23 -8.01 16 8 N -0.61 -6.17 2.92 -173.04 -0.50 -6.67 16 9 C 0.12 1.08 6.41 -3.58 -0.02 1.06 16 10 C -0.05 -0.51 6.44 -27.59 -0.18 -0.69 16 11 C -0.23 -2.92 6.43 -35.44 -0.23 -3.15 16 12 S 0.14 1.92 23.17 -107.50 -2.49 -0.57 16 13 C 0.07 1.14 6.75 -13.60 -0.09 1.05 16 14 C 0.23 4.37 6.84 -5.19 -0.04 4.34 16 15 N -0.75 -17.53 5.40 -61.09 -0.33 -17.86 16 16 C -0.25 -6.88 10.47 -15.06 -0.16 -7.04 16 17 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 18 C 0.01 0.33 5.50 -17.43 -0.10 0.24 16 19 N -0.93 -28.54 13.97 55.49 0.78 -27.77 16 20 Si 0.88 21.88 27.74 -169.99 -4.71 17.16 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.28 -6.64 6.52 56.52 0.37 -6.27 16 24 N -0.46 -7.56 10.51 -7.27 -0.08 -7.64 16 25 C 0.04 0.57 6.87 -82.80 -0.57 0.01 16 26 C 0.19 1.90 6.65 -4.10 -0.03 1.87 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.53 8.09 -51.93 -0.42 0.11 16 35 H 0.08 0.61 7.57 -51.93 -0.39 0.22 16 36 H 0.10 0.98 7.01 -51.93 -0.36 0.62 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.36 8.57 5.52 -40.82 -0.23 8.35 16 43 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 44 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.10 0.83 6.15 -51.93 -0.32 0.51 16 LS Contribution 383.90 15.07 5.79 5.79 Total: -1.00 -34.62 383.90 -10.04 -44.65 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -6.81 Total: 2.01 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -0.90 Total: 3.40 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: -0.14 Total: -59.94 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -0.77 Total: -12.50 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.71 Total: 17.16 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -2.49 Total: -0.57 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.62 -10.04 -44.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657083212.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.853 kcal (2) G-P(sol) polarization free energy of solvation -34.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds