Wall clock time and date at job start Sat Apr 11 2020 05:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47264 * 2 1 4 4 O 1.42902 * 109.47148 * 179.97438 * 3 2 1 5 5 C 1.42905 * 114.00020 * 180.02562 * 4 3 2 6 6 C 1.50691 * 109.47233 * 180.02562 * 5 4 3 7 7 O 1.21285 * 120.00230 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00226 * 179.97438 * 6 5 4 9 9 C 1.47062 * 120.80029 * 179.97438 * 8 6 5 10 10 C 1.53295 * 108.60784 * 115.31048 * 9 8 6 11 11 C 1.50992 * 108.95790 * 45.06357 * 10 9 8 12 12 S 1.75959 * 126.02852 * 162.31687 * 11 10 9 13 13 C 1.70908 * 90.30364 * 179.63406 * 12 11 10 14 14 C 1.50706 * 124.92348 * 180.08570 * 13 12 11 15 15 N 1.46498 * 109.46936 * 270.00005 * 14 13 12 16 16 C 1.36937 * 119.99954 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99636 * 359.97438 * 16 15 14 18 18 C 1.38809 * 120.00180 * 179.97438 * 16 15 14 19 19 N 1.31623 * 120.00121 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 120.00065 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47144 * 89.99736 * 20 18 16 22 22 H 1.48491 * 109.47054 * 209.99927 * 20 18 16 23 23 H 1.48494 * 109.47036 * 330.00094 * 20 18 16 24 24 N 1.28677 * 110.14692 * 0.06496 * 13 12 11 25 25 C 1.32432 * 117.82620 * 0.07915 * 24 13 12 26 26 C 1.47032 * 120.79813 * 0.02647 * 8 6 5 27 27 H 1.08999 * 109.47303 * 60.00066 * 1 2 3 28 28 H 1.09005 * 109.47333 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47199 * 300.00179 * 1 2 3 30 30 H 1.08998 * 109.47603 * 239.99833 * 2 1 3 31 31 H 1.09007 * 109.46990 * 120.00091 * 2 1 3 32 32 H 1.09004 * 109.47159 * 59.99797 * 3 2 1 33 33 H 1.09007 * 109.47192 * 299.99967 * 3 2 1 34 34 H 1.09004 * 109.47227 * 59.99520 * 5 4 3 35 35 H 1.09003 * 109.46774 * 300.00266 * 5 4 3 36 36 H 1.09000 * 109.61084 * 355.58151 * 9 8 6 37 37 H 1.08993 * 109.62093 * 235.05151 * 9 8 6 38 38 H 1.08995 * 109.56075 * 285.21909 * 10 9 8 39 39 H 1.09002 * 109.55673 * 164.90458 * 10 9 8 40 40 H 1.08997 * 109.47196 * 30.00065 * 14 13 12 41 41 H 1.08993 * 109.46898 * 150.00160 * 14 13 12 42 42 H 0.97001 * 120.00055 * 0.02562 * 15 14 13 43 43 H 0.96992 * 120.00124 * 180.02562 * 19 18 16 44 44 H 1.08991 * 109.82279 * 105.66759 * 26 8 6 45 45 H 1.09007 * 109.80660 * 344.76649 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 8 3.4690 1.4424 0.0006 5 6 4.0502 2.7479 0.0012 6 6 5.5524 2.6289 0.0012 7 8 6.0741 1.5340 0.0012 8 7 6.3165 3.7393 0.0012 9 6 7.7840 3.6436 0.0017 10 6 8.3129 4.2312 -1.3115 11 6 7.5967 5.5307 -1.5911 12 16 8.1259 6.7852 -2.7058 13 6 6.7468 7.7194 -2.3235 14 6 6.4266 9.0676 -2.9161 15 7 7.0220 10.1190 -2.0877 16 6 6.8622 11.4347 -2.4320 17 1 6.2975 11.6972 -3.3144 18 6 7.4260 12.4309 -1.6469 19 7 7.2728 13.6956 -1.9780 20 14 8.4021 11.9769 -0.1202 21 1 9.8313 11.7977 -0.4816 22 1 8.2783 13.0610 0.8870 23 1 7.8727 10.7110 0.4474 24 7 6.0213 7.1046 -1.4566 25 6 6.4381 5.9226 -1.0285 26 6 5.7027 5.0754 0.0019 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.7282 3.2886 0.8912 35 1 3.7289 3.2891 -0.8887 36 1 8.0824 2.5982 0.0812 37 1 8.1872 4.2068 0.8433 38 1 8.1282 3.5304 -2.1256 39 1 9.3835 4.4163 -1.2234 40 1 6.8331 9.1265 -3.9257 41 1 5.3454 9.2014 -2.9513 42 1 7.5295 9.8831 -1.2954 43 1 7.6670 14.3917 -1.4296 44 1 5.8005 5.5265 0.9892 45 1 4.6492 4.9981 -0.2672 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001657083212.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:23 Heat of formation + Delta-G solvation = -41.734845 kcal Electronic energy + Delta-G solvation = -26315.533698 eV Core-core repulsion = 22459.567025 eV Total energy + Delta-G solvation = -3855.966673 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.73717 -40.55139 -38.87767 -37.64844 -36.60680 -34.64468 -33.94791 -33.51228 -31.45393 -29.59549 -28.74027 -27.09944 -26.31304 -25.12019 -24.05577 -23.25293 -22.48773 -20.99326 -20.07598 -19.31864 -19.06692 -18.18202 -17.71795 -17.56324 -16.87314 -16.84262 -16.55154 -16.22628 -15.94240 -15.61454 -15.22347 -15.09860 -14.91557 -14.74531 -14.48513 -14.17230 -14.05905 -14.02598 -13.63685 -13.27685 -13.17542 -13.07499 -13.05090 -12.90250 -12.87124 -12.45310 -12.20130 -12.16998 -11.85830 -11.84759 -11.80296 -11.09026 -10.98570 -10.72112 -10.65682 -10.28317 -9.96428 -9.68995 -9.40919 -8.05814 -5.41912 -0.42589 0.26038 0.69596 1.35633 1.37080 1.37830 1.44863 1.50832 1.60522 2.44747 2.62836 2.92371 3.25989 3.38813 3.61690 3.68941 3.77468 3.81091 4.01358 4.03958 4.10988 4.18020 4.20486 4.22992 4.30325 4.40820 4.44851 4.50939 4.57576 4.63334 4.69679 4.76051 4.80957 4.83531 4.84543 5.09521 5.15321 5.19539 5.22497 5.35344 5.69471 5.98397 6.15836 6.18419 6.67002 6.95250 6.99283 7.71541 7.91315 9.14692 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015522 B = 0.002324 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.431694 B =12044.394378 C =12888.711009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.124 4.124 3 C 0.054 3.946 4 O -0.397 6.397 5 C 0.042 3.958 6 C 0.522 3.478 7 O -0.561 6.561 8 N -0.608 5.608 9 C 0.115 3.885 10 C -0.051 4.051 11 C -0.222 4.222 12 S 0.168 5.832 13 C 0.031 3.969 14 C 0.231 3.769 15 N -0.749 5.749 16 C -0.236 4.236 17 H 0.068 0.932 18 C -0.054 4.054 19 N -0.976 5.976 20 Si 0.949 3.051 21 H -0.274 1.274 22 H -0.292 1.292 23 H -0.262 1.262 24 N -0.475 5.475 25 C 0.026 3.974 26 C 0.195 3.805 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.111 0.889 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.114 0.886 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.365 0.635 43 H 0.260 0.740 44 H 0.111 0.889 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.996 -28.081 5.141 29.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.162 4.162 3 C -0.022 4.022 4 O -0.316 6.316 5 C -0.037 4.037 6 C 0.311 3.689 7 O -0.438 6.438 8 N -0.342 5.342 9 C -0.009 4.009 10 C -0.092 4.092 11 C -0.344 4.344 12 S 0.425 5.575 13 C -0.247 4.247 14 C 0.102 3.898 15 N -0.396 5.396 16 C -0.367 4.367 17 H 0.085 0.915 18 C -0.247 4.247 19 N -0.626 5.626 20 Si 0.776 3.224 21 H -0.199 1.199 22 H -0.219 1.219 23 H -0.187 1.187 24 N -0.190 5.190 25 C -0.107 4.107 26 C 0.070 3.930 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.129 0.871 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.132 0.868 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.198 0.802 43 H 0.069 0.931 44 H 0.129 0.871 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.332 -28.232 4.456 29.075 hybrid contribution -0.003 0.421 1.173 1.246 sum -5.335 -27.811 5.629 28.872 Atomic orbital electron populations 1.21678 0.93093 1.02892 1.02657 1.21472 0.96931 0.95084 1.02733 1.22844 0.78800 0.98846 1.01680 1.87951 1.21531 1.26374 1.95761 1.22395 0.89479 0.86907 1.04944 1.20662 0.89842 0.83273 0.75100 1.90705 1.75385 1.27399 1.50339 1.48049 1.07445 1.05359 1.73363 1.21768 0.78288 1.03558 0.97238 1.20628 1.00346 0.89390 0.98816 1.26351 1.00836 1.02915 1.04266 1.83866 1.24335 1.09377 1.39879 1.26799 0.96217 1.01947 0.99727 1.19243 0.98008 0.79430 0.93153 1.42581 1.64879 1.01930 1.30226 1.18983 1.27575 0.82062 1.08063 0.91451 1.25407 1.02259 0.94858 1.02139 1.69854 1.51139 0.99647 1.41970 0.85502 0.79301 0.77501 0.80055 1.19937 1.21876 1.18717 1.65739 1.33502 1.08206 1.11589 1.21276 0.95078 0.92360 1.01972 1.20453 0.96962 0.79058 0.96569 0.91989 0.91455 0.91768 0.92044 0.91766 0.91478 0.91985 0.87139 0.88309 0.87889 0.88689 0.89357 0.86807 0.92009 0.92734 0.80238 0.93114 0.87126 0.86070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 71.98 0.71 -0.53 16 2 C -0.12 -1.59 6.30 30.59 0.19 -1.40 16 3 C 0.05 0.72 5.94 71.98 0.43 1.15 16 4 O -0.40 -8.05 9.88 -129.94 -1.28 -9.34 16 5 C 0.04 0.64 4.82 71.23 0.34 0.99 16 6 C 0.52 10.94 7.78 87.65 0.68 11.62 16 7 O -0.56 -16.45 15.92 15.99 0.25 -16.20 16 8 N -0.61 -10.60 2.92 -819.76 -2.39 -12.99 16 9 C 0.11 1.79 6.41 86.37 0.55 2.35 16 10 C -0.05 -0.81 6.44 30.04 0.19 -0.62 16 11 C -0.22 -4.92 6.43 24.95 0.16 -4.76 16 12 S 0.17 4.26 23.17 -56.49 -1.31 2.95 16 13 C 0.03 1.00 6.75 88.57 0.60 1.59 16 14 C 0.23 8.70 6.84 85.64 0.59 9.28 16 15 N -0.75 -34.78 5.40 -347.19 -1.87 -36.65 16 16 C -0.24 -13.19 10.47 84.03 0.88 -12.31 16 17 H 0.07 4.05 8.06 -2.91 -0.02 4.02 16 18 C -0.05 -3.15 5.50 84.86 0.47 -2.68 16 19 N -0.98 -61.31 13.97 21.65 0.30 -61.00 16 20 Si 0.95 45.01 27.74 68.60 1.90 46.91 16 21 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 23 H -0.26 -11.60 6.52 99.48 0.65 -10.95 16 24 N -0.48 -14.64 10.51 -176.92 -1.86 -16.50 16 25 C 0.03 0.63 6.87 42.16 0.29 0.92 16 26 C 0.19 3.23 6.65 86.05 0.57 3.80 16 27 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 29 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 34 H 0.11 1.06 8.09 -2.38 -0.02 1.04 16 35 H 0.10 1.18 7.57 -2.39 -0.02 1.16 16 36 H 0.10 1.72 7.01 -2.39 -0.02 1.70 16 37 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.36 16.63 5.52 -92.71 -0.51 16.12 16 43 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 44 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.12 1.55 6.15 -2.38 -0.01 1.53 16 Total: -1.00 -75.72 383.90 0.84 -74.89 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: 0.43 Total: 18.53 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 6.66 Total: 9.41 kcal Atomic # 7 Polarization: -121.33 SS G_CDS: -5.82 Total: -127.15 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -1.03 Total: -25.53 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.90 Total: 46.91 kcal Atomic # 16 Polarization: 4.26 SS G_CDS: -1.31 Total: 2.95 kcal Total: -75.72 0.84 -74.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657083212.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.151 kcal (2) G-P(sol) polarization free energy of solvation -75.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds