Wall clock time and date at job start Sat Apr 11 2020 05:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.52264 * 2 1 4 4 C 1.53193 * 109.50753 * 120.07354 * 2 1 3 5 5 N 1.46924 * 108.76463 * 65.30072 * 4 2 1 6 6 C 1.34779 * 120.63267 * 233.59245 * 5 4 2 7 7 O 1.21281 * 119.99967 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00137 * 180.02562 * 6 5 4 9 9 S 1.81003 * 109.47108 * 180.02562 * 8 6 5 10 10 C 1.76199 * 99.99902 * 179.97438 * 9 8 6 11 11 H 1.07997 * 120.00175 * 359.97438 * 10 9 8 12 12 C 1.38796 * 119.99838 * 179.97438 * 10 9 8 13 13 N 1.31634 * 120.00325 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00135 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.46858 * 60.00324 * 14 12 10 16 16 H 1.48497 * 109.47341 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47114 * 300.00484 * 14 12 10 18 18 C 1.46934 * 118.74023 * 53.61657 * 5 4 2 19 19 C 1.53190 * 108.77167 * 306.39156 * 18 5 4 20 20 C 1.53040 * 109.31541 * 54.63658 * 19 18 5 21 21 H 1.08989 * 109.46283 * 58.64006 * 20 19 18 22 22 N 1.46904 * 109.46071 * 178.61630 * 20 19 18 23 23 C 1.46897 * 110.99447 * 275.02362 * 22 20 19 24 24 C 1.50708 * 109.46932 * 179.97438 * 23 22 20 25 25 C 1.41378 * 126.80201 * 94.98563 * 24 23 22 26 26 C 1.35451 * 103.98546 * 180.02562 * 25 24 23 27 27 O 1.34034 * 106.44611 * 359.97438 * 26 25 24 28 28 N 1.20923 * 111.56833 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.47790 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47194 * 300.08159 * 1 2 3 31 31 H 1.09007 * 109.47534 * 60.08154 * 1 2 3 32 32 H 1.08997 * 109.58631 * 305.51985 * 4 2 1 33 33 H 1.08999 * 109.71497 * 185.15479 * 4 2 1 34 34 H 1.09000 * 109.47115 * 300.00076 * 8 6 5 35 35 H 1.08996 * 109.47134 * 60.00133 * 8 6 5 36 36 H 0.96992 * 120.00363 * 179.97438 * 13 12 10 37 37 H 1.08993 * 109.58451 * 186.60228 * 18 5 4 38 38 H 1.08997 * 109.58295 * 66.17624 * 18 5 4 39 39 H 1.08996 * 109.49785 * 294.67985 * 19 18 5 40 40 H 1.09005 * 109.51901 * 174.60273 * 19 18 5 41 41 H 1.00902 * 110.99728 * 38.97395 * 22 20 19 42 42 H 1.09009 * 109.47504 * 60.00105 * 23 22 20 43 43 H 1.09003 * 109.47725 * 299.99729 * 23 22 20 44 44 H 1.08005 * 128.00578 * 359.97438 * 25 24 23 45 45 H 1.08001 * 126.77273 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0415 -0.7236 1.2496 5 7 1.6514 -2.1379 1.1698 6 6 0.9747 -2.7216 2.1786 7 8 0.6815 -2.0784 3.1642 8 6 0.5821 -4.1733 2.0820 9 16 -0.3085 -4.6586 3.5812 10 6 -0.6372 -6.3489 3.2081 11 1 -0.3018 -6.7705 2.2721 12 6 -1.3273 -7.1387 4.1172 13 7 -1.7366 -6.6248 5.2579 14 14 -1.6765 -8.9307 3.7215 15 1 -0.3942 -9.6521 3.5205 16 1 -2.4222 -9.5499 4.8465 17 1 -2.4910 -9.0144 2.4827 18 6 2.0136 -2.9040 -0.0306 19 6 1.5026 -2.1557 -1.2658 20 6 2.0408 -0.7231 -1.2484 21 1 3.1304 -0.7447 -1.2352 22 7 1.5797 -0.0125 -2.4486 23 6 2.4725 -0.2677 -3.5868 24 6 1.9684 0.4755 -4.7971 25 6 2.3841 1.7517 -5.2412 26 6 1.6417 1.9693 -6.3531 27 8 0.8692 0.8855 -6.5116 28 7 1.0646 0.0691 -5.6412 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3633 0.5151 0.8893 31 1 -0.3634 0.5126 -0.8907 32 1 1.6012 -0.2727 2.1389 33 1 3.1276 -0.6465 1.3004 34 1 -0.0614 -4.3187 1.2144 35 1 1.4777 -4.7856 1.9768 36 1 -2.2192 -7.1767 5.8930 37 1 1.5548 -3.8916 0.0141 38 1 3.0975 -3.0044 -0.0866 39 1 0.4129 -2.1352 -1.2537 40 1 1.8470 -2.6628 -2.1671 41 1 0.6279 -0.2612 -2.6727 42 1 2.4933 -1.3366 -3.7999 43 1 3.4786 0.0739 -3.3433 44 1 3.1221 2.4028 -4.7963 45 1 1.6679 2.8431 -6.9872 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698887128.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:37 Heat of formation + Delta-G solvation = 5.737666 kcal Electronic energy + Delta-G solvation = -26752.620358 eV Core-core repulsion = 22898.712247 eV Total energy + Delta-G solvation = -3853.908111 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.83487 -41.44951 -39.36757 -36.89411 -35.03032 -34.59866 -33.72723 -32.55312 -31.68159 -30.89383 -27.90337 -27.72395 -27.18782 -24.65363 -23.99870 -23.90062 -21.87031 -21.36144 -19.90244 -19.51285 -18.64812 -18.48612 -18.18966 -16.92180 -16.88437 -16.86392 -16.47321 -16.07642 -15.96983 -15.79736 -15.47926 -15.15398 -14.59208 -14.48436 -14.31530 -14.14712 -13.82644 -13.63231 -13.48074 -13.41910 -13.18634 -12.91237 -12.88533 -12.72987 -12.64647 -12.44819 -12.22340 -12.03004 -11.74415 -11.64141 -11.44439 -11.14460 -11.10261 -10.83862 -10.51597 -10.28630 -9.67909 -9.41310 -8.68795 -8.35745 -6.14361 0.66597 1.24355 1.32190 1.42345 1.44439 1.54156 1.58547 2.11383 2.26254 2.51802 2.97973 3.06769 3.23892 3.38407 3.59235 3.67116 3.74821 3.89664 4.00930 4.05679 4.20461 4.22636 4.30124 4.37599 4.41228 4.46666 4.49816 4.53987 4.68060 4.72492 4.74073 4.80726 4.82716 4.89134 4.94928 5.08897 5.13708 5.18004 5.22285 5.39172 5.39616 5.62398 5.95634 6.17899 6.21832 6.30153 7.05022 7.15973 7.38676 8.73190 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019066 B = 0.002117 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.218252 B =13225.734591 C =14159.424268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.080 4.080 3 H 0.102 0.898 4 C 0.113 3.887 5 N -0.602 5.602 6 C 0.533 3.467 7 O -0.566 6.566 8 C -0.124 4.124 9 S -0.151 6.151 10 C -0.547 4.547 11 H 0.082 0.918 12 C 0.013 3.987 13 N -0.910 5.910 14 Si 0.998 3.002 15 H -0.261 1.261 16 H -0.278 1.278 17 H -0.263 1.263 18 C 0.106 3.894 19 C -0.162 4.162 20 C 0.104 3.896 21 H 0.104 0.896 22 N -0.676 5.676 23 C 0.138 3.862 24 C 0.006 3.994 25 C -0.229 4.229 26 C -0.051 4.051 27 O 0.081 5.919 28 N -0.401 5.401 29 H 0.036 0.964 30 H 0.038 0.962 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.271 0.729 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.059 0.941 40 H 0.090 0.910 41 H 0.339 0.661 42 H 0.047 0.953 43 H 0.115 0.885 44 H 0.194 0.806 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.594 17.670 -25.888 34.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.099 4.099 3 H 0.120 0.880 4 C -0.010 4.010 5 N -0.336 5.336 6 C 0.321 3.679 7 O -0.445 6.445 8 C -0.275 4.275 9 S 0.076 5.924 10 C -0.694 4.694 11 H 0.100 0.900 12 C -0.192 4.192 13 N -0.547 5.547 14 Si 0.820 3.180 15 H -0.185 1.185 16 H -0.203 1.203 17 H -0.187 1.187 18 C -0.017 4.017 19 C -0.202 4.202 20 C -0.006 4.006 21 H 0.122 0.878 22 N -0.306 5.306 23 C 0.009 3.991 24 C -0.153 4.153 25 C -0.251 4.251 26 C -0.132 4.132 27 O 0.017 5.983 28 N -0.108 5.108 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.120 0.880 35 H 0.125 0.875 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.115 0.885 39 H 0.078 0.922 40 H 0.109 0.891 41 H 0.157 0.843 42 H 0.065 0.935 43 H 0.133 0.867 44 H 0.211 0.789 45 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 12.659 18.097 -24.246 32.797 hybrid contribution -0.082 -2.005 -0.792 2.157 sum 12.578 16.093 -25.038 32.312 Atomic orbital electron populations 1.21752 0.96150 1.00634 1.01294 1.21387 0.95468 1.00335 0.92729 0.87956 1.21798 1.00589 0.79597 0.98969 1.48048 1.55658 1.11995 1.17907 1.20058 0.77016 0.88260 0.82587 1.90672 1.55545 1.65542 1.32729 1.23366 1.04367 0.96086 1.03656 1.85577 1.71692 1.12598 1.22511 1.23148 1.42919 0.95809 1.07565 0.90024 1.26137 0.94351 1.04594 0.94091 1.70176 1.36787 1.38694 1.09021 0.85009 0.78891 0.75973 0.78162 1.18542 1.20328 1.18749 1.21909 1.01877 0.95156 0.82720 1.22661 1.01604 0.97742 0.98154 1.21508 1.00470 0.89602 0.88986 0.87836 1.60611 1.05886 1.60811 1.03290 1.20310 0.97522 0.96723 0.84524 1.23921 0.96504 0.96202 0.98656 1.23083 1.06108 0.97306 0.98597 1.26873 0.92458 0.93653 1.00189 1.84793 1.51035 1.22630 1.39891 1.73875 1.19459 1.15695 1.01790 0.94530 0.94285 0.91526 0.91308 0.89034 0.88032 0.87526 0.91973 0.89805 0.88471 0.92233 0.89144 0.84263 0.93455 0.86704 0.78921 0.72673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.46 71.98 0.61 -2.51 16 2 C -0.08 -1.37 2.91 -10.71 -0.03 -1.40 16 3 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 4 C 0.11 2.49 5.83 86.36 0.50 2.99 16 5 N -0.60 -15.87 2.41 -818.91 -1.97 -17.84 16 6 C 0.53 20.41 7.72 87.66 0.68 21.09 16 7 O -0.57 -26.94 15.28 -3.03 -0.05 -26.99 16 8 C -0.12 -5.06 4.50 71.24 0.32 -4.74 16 9 S -0.15 -8.55 20.57 -56.49 -1.16 -9.71 16 10 C -0.55 -31.59 9.50 67.95 0.65 -30.94 16 11 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 12 C 0.01 0.75 5.49 84.86 0.47 1.22 16 13 N -0.91 -56.49 13.22 21.65 0.29 -56.21 16 14 Si 1.00 43.96 29.55 68.60 2.03 45.99 16 15 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 16 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 17 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 18 C 0.11 1.96 6.34 86.36 0.55 2.51 16 19 C -0.16 -2.46 4.99 30.67 0.15 -2.31 16 20 C 0.10 1.36 2.13 44.94 0.10 1.46 16 21 H 0.10 1.00 7.80 -2.39 -0.02 0.98 16 22 N -0.68 -9.09 5.80 -495.41 -2.87 -11.96 16 23 C 0.14 1.61 6.07 85.56 0.52 2.13 16 24 C 0.01 0.09 6.84 43.58 0.30 0.38 16 25 C -0.23 -2.17 11.12 22.40 0.25 -1.92 16 26 C -0.05 -0.39 12.30 67.18 0.83 0.44 16 27 O 0.08 1.27 11.20 71.69 0.80 2.07 16 28 N -0.40 -7.74 12.07 -49.56 -0.60 -8.34 16 29 H 0.04 0.95 5.97 -2.39 -0.01 0.94 16 30 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 1.32 7.24 -2.38 -0.02 1.30 16 32 H 0.07 1.95 7.01 -2.39 -0.02 1.93 16 33 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.10 3.84 7.69 -2.40 -0.02 3.82 16 35 H 0.11 3.94 7.94 -2.40 -0.02 3.92 16 36 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 37 H 0.08 1.69 5.93 -2.39 -0.01 1.67 16 38 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.06 1.15 6.33 -2.39 -0.02 1.14 16 40 H 0.09 1.10 7.42 -2.38 -0.02 1.08 16 41 H 0.34 5.60 7.75 -89.69 -0.69 4.91 16 42 H 0.05 0.58 7.41 -2.38 -0.02 0.56 16 43 H 0.11 0.87 8.06 -2.39 -0.02 0.85 16 44 H 0.19 0.82 8.06 -2.91 -0.02 0.79 16 45 H 0.26 -0.65 8.06 -2.91 -0.02 -0.68 16 Total: -1.00 -81.18 376.97 2.66 -78.51 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.32 Total: 16.07 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: 5.88 Total: -11.60 kcal Atomic # 7 Polarization: -89.19 SS G_CDS: -5.16 Total: -94.35 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: 0.76 Total: -24.92 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.71 kcal Total: -81.18 2.66 -78.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698887128.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.251 kcal (2) G-P(sol) polarization free energy of solvation -81.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds