Wall clock time and date at job start Sat Apr 11 2020 05:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.70243 * 2 1 4 4 C 1.53626 * 109.74186 * 239.45044 * 2 1 3 5 5 C 1.53040 * 109.24070 * 295.11848 * 4 2 1 6 6 H 1.09005 * 109.45753 * 58.53158 * 5 4 2 7 7 N 1.46898 * 109.45897 * 178.49053 * 5 4 2 8 8 C 1.46904 * 110.99907 * 205.06811 * 7 5 4 9 9 C 1.50698 * 109.46927 * 180.02562 * 8 7 5 10 10 C 1.41373 * 126.80408 * 95.00075 * 9 8 7 11 11 C 1.35457 * 103.98615 * 179.97438 * 10 9 8 12 12 O 1.34040 * 106.44476 * 0.02562 * 11 10 9 13 13 N 1.20918 * 111.56749 * 359.70710 * 12 11 10 14 14 C 1.53040 * 109.54077 * 298.51151 * 5 4 2 15 15 C 1.53195 * 109.31233 * 61.36216 * 14 5 4 16 16 N 1.46920 * 108.77715 * 305.37008 * 15 14 5 17 17 C 1.34780 * 120.63110 * 233.58100 * 16 15 14 18 18 O 1.21280 * 120.00423 * 179.97438 * 17 16 15 19 19 C 1.50701 * 119.99795 * 0.02562 * 17 16 15 20 20 S 1.81002 * 109.47156 * 179.97438 * 19 17 16 21 21 C 1.76193 * 100.00049 * 180.02562 * 20 19 17 22 22 H 1.08005 * 120.00026 * 359.97438 * 21 20 19 23 23 C 1.38806 * 120.00056 * 180.02562 * 21 20 19 24 24 N 1.31623 * 119.99640 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00053 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47282 * 59.99711 * 25 23 21 27 27 H 1.48497 * 109.47200 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47280 * 300.00084 * 25 23 21 29 29 H 1.08999 * 109.47471 * 299.64684 * 1 2 3 30 30 H 1.09005 * 109.47277 * 59.65096 * 1 2 3 31 31 H 1.08998 * 109.47117 * 179.64623 * 1 2 3 32 32 H 1.08996 * 109.63146 * 175.12588 * 4 2 1 33 33 H 1.08995 * 109.43098 * 54.98348 * 4 2 1 34 34 H 1.00900 * 111.00008 * 329.01865 * 7 5 4 35 35 H 1.09003 * 109.47004 * 300.00141 * 8 7 5 36 36 H 1.09003 * 109.46877 * 59.99993 * 8 7 5 37 37 H 1.07998 * 128.00805 * 0.03421 * 10 9 8 38 38 H 1.08001 * 126.77280 * 179.97438 * 11 10 9 39 39 H 1.09001 * 109.49589 * 301.41780 * 14 5 4 40 40 H 1.09000 * 109.49984 * 181.31652 * 14 5 4 41 41 H 1.09002 * 109.59128 * 185.58008 * 15 14 5 42 42 H 1.09004 * 109.58369 * 65.15588 * 15 14 5 43 43 H 1.09002 * 109.47060 * 299.99722 * 19 17 16 44 44 H 1.09001 * 109.47380 * 59.99809 * 19 17 16 45 45 H 0.97010 * 119.99946 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0489 -0.7350 -1.2452 5 6 1.6419 -2.2082 -1.1675 6 1 0.5566 -2.2820 -1.0989 7 7 2.1046 -2.9080 -2.3734 8 6 1.2799 -4.0934 -2.6432 9 6 1.7838 -4.7839 -3.8842 10 6 2.6906 -5.8669 -3.9418 11 6 2.8182 -6.1170 -5.2670 12 8 2.0347 -5.2309 -5.8975 13 7 1.4660 -4.5049 -5.1155 14 6 2.2757 -2.8497 0.0690 15 6 1.7643 -2.1398 1.3265 16 7 2.0225 -0.6995 1.1945 17 6 2.6935 -0.0314 2.1537 18 8 2.9007 1.1574 2.0328 19 6 3.1873 -0.7619 3.3758 20 16 4.0438 0.3998 4.4681 21 6 4.5020 -0.6898 5.7747 22 1 4.2355 -1.7353 5.7245 23 6 5.2045 -0.2045 6.8690 24 7 5.5288 1.0697 6.9303 25 14 5.6897 -1.3595 8.2546 26 1 6.5597 -2.4372 7.7190 27 1 6.4260 -0.6003 9.2970 28 1 4.4684 -1.9593 8.8496 29 1 -0.3634 0.5083 0.8931 30 1 -0.3634 0.5193 -0.8869 31 1 -0.3633 -1.0276 -0.0063 32 1 3.1354 -0.6594 -1.2889 33 1 1.6162 -0.2847 -2.1386 34 1 2.1172 -2.2876 -3.1690 35 1 1.3398 -4.7780 -1.7971 36 1 0.2438 -3.7890 -2.7915 37 1 3.1699 -6.3774 -3.1196 38 1 3.4310 -6.8793 -5.7250 39 1 3.3600 -2.7543 0.0130 40 1 2.0045 -3.9046 0.1110 41 1 2.2863 -2.5259 2.2021 42 1 0.6929 -2.3108 1.4324 43 1 2.3405 -1.2006 3.9038 44 1 3.8757 -1.5512 3.0740 45 1 6.0202 1.4089 7.6949 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733321371.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:44 Heat of formation + Delta-G solvation = 28.932327 kcal Electronic energy + Delta-G solvation = -26598.570924 eV Core-core repulsion = 22745.668609 eV Total energy + Delta-G solvation = -3852.902315 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.31239 -40.29761 -38.08437 -36.17593 -34.15047 -32.87087 -32.42370 -32.11248 -31.00127 -28.98233 -28.00737 -26.14610 -25.47480 -23.87074 -23.51228 -22.38392 -21.33438 -20.78672 -18.60258 -18.13667 -17.92986 -17.68352 -16.89857 -15.99764 -15.81770 -15.54529 -15.31627 -15.10312 -14.80054 -14.42155 -14.06725 -13.97238 -13.83155 -13.47944 -13.31801 -13.06513 -12.92758 -12.80209 -12.54301 -12.18645 -12.04369 -11.86777 -11.72973 -11.54597 -11.26644 -11.04858 -11.03693 -10.94796 -10.76191 -10.66613 -10.37036 -10.04737 -9.80452 -9.31344 -9.05457 -8.87916 -8.52451 -8.21744 -6.49263 -6.20826 -3.91356 1.11157 1.79967 2.87800 2.92436 3.06442 3.23550 3.25690 3.29220 3.58045 3.62008 3.91790 4.12361 4.20876 4.42603 4.54822 4.75786 4.79713 4.86656 4.91637 4.95691 5.00782 5.04223 5.14050 5.14465 5.22589 5.29234 5.32669 5.35575 5.47072 5.50749 5.59282 5.61191 5.65647 5.75267 5.81719 5.88480 5.98794 6.02714 6.12659 6.20243 6.57820 6.69404 6.90220 7.58183 7.60226 7.85850 8.35442 8.58401 9.24179 10.86490 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017130 B = 0.002119 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.129631 B =13209.913541 C =14377.821711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.104 0.896 4 C -0.129 4.129 5 C 0.089 3.911 6 H 0.052 0.948 7 N -0.680 5.680 8 C 0.138 3.862 9 C 0.020 3.980 10 C -0.217 4.217 11 C -0.063 4.063 12 O 0.099 5.901 13 N -0.364 5.364 14 C -0.122 4.122 15 C 0.107 3.893 16 N -0.615 5.615 17 C 0.536 3.464 18 O -0.518 6.518 19 C -0.150 4.150 20 S -0.061 6.061 21 C -0.535 4.535 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.345 0.655 35 H 0.096 0.904 36 H 0.049 0.951 37 H 0.173 0.827 38 H 0.217 0.783 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.065 0.935 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.838 -15.246 -22.969 29.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.122 0.878 4 C -0.167 4.167 5 C -0.020 4.020 6 H 0.069 0.931 7 N -0.312 5.312 8 C 0.008 3.992 9 C -0.139 4.139 10 C -0.239 4.239 11 C -0.144 4.144 12 O 0.032 5.968 13 N -0.068 5.068 14 C -0.161 4.161 15 C -0.017 4.017 16 N -0.351 5.351 17 C 0.324 3.676 18 O -0.392 6.392 19 C -0.301 4.301 20 S 0.166 5.834 21 C -0.683 4.683 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.200 1.200 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.164 0.836 35 H 0.114 0.886 36 H 0.067 0.933 37 H 0.190 0.810 38 H 0.233 0.767 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.111 0.889 42 H 0.083 0.917 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.764 -12.769 -23.269 28.281 hybrid contribution -0.170 -2.481 1.225 2.772 sum -9.934 -15.250 -22.044 28.586 Atomic orbital electron populations 1.22159 0.95307 1.02025 1.02517 1.21116 0.93684 0.97882 0.83614 0.87842 1.22173 1.02738 0.93974 0.97861 1.21567 0.97400 0.92984 0.90018 0.93059 1.60486 1.54451 1.09427 1.06862 1.20233 0.94424 0.92825 0.91687 1.23543 0.98917 0.97712 0.93761 1.22758 1.02890 1.00410 0.97828 1.26052 0.98394 0.97152 0.92791 1.84834 1.44138 1.34318 1.33539 1.73851 1.16962 1.14228 1.01735 1.21938 1.02175 0.99103 0.92882 1.21714 1.00785 0.80364 0.98804 1.48182 1.57276 1.08898 1.20760 1.20327 0.76573 0.87338 0.83316 1.90687 1.55575 1.15100 1.77820 1.23556 1.04025 1.04652 0.97838 1.85405 1.69298 1.11375 1.17364 1.22815 1.42290 0.96807 1.06434 0.91018 1.24991 0.95110 0.95598 0.97898 1.70009 1.37017 1.12870 1.30361 0.86230 0.78693 0.80109 0.80500 1.19937 1.20825 1.19958 0.91909 0.91734 0.92435 0.90290 0.91050 0.83596 0.88562 0.93342 0.80991 0.76680 0.90374 0.90960 0.88928 0.91684 0.89342 0.89255 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.03 37.16 0.34 -1.26 16 2 C 0.14 1.69 3.22 -67.37 -0.22 1.47 16 3 H 0.10 1.48 7.00 -51.93 -0.36 1.11 16 4 C -0.13 -1.24 4.86 -26.39 -0.13 -1.37 16 5 C 0.09 0.75 2.25 -67.67 -0.15 0.60 16 6 H 0.05 0.41 6.14 -51.93 -0.32 0.09 16 7 N -0.68 -5.63 6.30 -107.94 -0.68 -6.31 16 8 C 0.14 1.02 6.07 -4.97 -0.03 0.99 16 9 C 0.02 0.17 6.84 -82.10 -0.56 -0.39 16 10 C -0.22 -1.40 11.12 -39.38 -0.44 -1.84 16 11 C -0.06 -0.33 12.30 29.74 0.37 0.04 16 12 O 0.10 0.81 11.20 17.18 0.19 1.00 16 13 N -0.36 -3.58 12.07 33.42 0.40 -3.18 16 14 C -0.12 -1.11 5.59 -26.61 -0.15 -1.26 16 15 C 0.11 1.14 5.92 -3.71 -0.02 1.12 16 16 N -0.61 -8.55 2.68 -164.96 -0.44 -8.99 16 17 C 0.54 10.18 7.72 -10.98 -0.08 10.09 16 18 O -0.52 -11.84 15.27 5.56 0.08 -11.76 16 19 C -0.15 -3.04 4.50 36.01 0.16 -2.88 16 20 S -0.06 -1.66 20.57 -107.50 -2.21 -3.88 16 21 C -0.54 -15.20 9.50 30.94 0.29 -14.91 16 22 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 23 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -26.17 13.22 55.49 0.73 -25.44 16 25 Si 0.92 21.35 29.55 -169.99 -5.02 16.32 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.50 5.71 -51.93 -0.30 0.20 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 34 H 0.35 2.95 8.32 -39.29 -0.33 2.62 16 35 H 0.10 0.61 7.41 -51.93 -0.39 0.22 16 36 H 0.05 0.36 8.05 -51.93 -0.42 -0.06 16 37 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 38 H 0.22 0.18 8.06 -52.49 -0.42 -0.24 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.54 7.43 -51.93 -0.39 0.16 16 41 H 0.09 1.02 5.93 -51.93 -0.31 0.71 16 42 H 0.06 0.59 7.48 -51.93 -0.39 0.21 16 43 H 0.09 1.66 7.94 -51.92 -0.41 1.24 16 44 H 0.09 1.68 7.69 -51.91 -0.40 1.28 16 45 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 378.62 15.07 5.71 5.71 Total: -1.00 -35.25 378.62 -8.46 -43.71 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -6.50 Total: 0.40 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -0.72 Total: -7.60 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: 0.02 Total: -43.92 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.28 Total: -10.75 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.25 -8.46 -43.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733321371.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.646 kcal (2) G-P(sol) polarization free energy of solvation -35.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds