Wall clock time and date at job start Sat Apr 11 2020 05:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.70243 * 2 1 4 4 C 1.53626 * 109.74186 * 239.45044 * 2 1 3 5 5 C 1.53040 * 109.24070 * 295.11848 * 4 2 1 6 6 H 1.09005 * 109.45753 * 58.53158 * 5 4 2 7 7 N 1.46898 * 109.45897 * 178.49053 * 5 4 2 8 8 C 1.46904 * 110.99907 * 205.06811 * 7 5 4 9 9 C 1.50698 * 109.46927 * 180.02562 * 8 7 5 10 10 C 1.41373 * 126.80408 * 95.00075 * 9 8 7 11 11 C 1.35457 * 103.98615 * 179.97438 * 10 9 8 12 12 O 1.34040 * 106.44476 * 0.02562 * 11 10 9 13 13 N 1.20918 * 111.56749 * 359.70710 * 12 11 10 14 14 C 1.53040 * 109.54077 * 298.51151 * 5 4 2 15 15 C 1.53195 * 109.31233 * 61.36216 * 14 5 4 16 16 N 1.46920 * 108.77715 * 305.37008 * 15 14 5 17 17 C 1.34780 * 120.63110 * 233.58100 * 16 15 14 18 18 O 1.21280 * 120.00423 * 179.97438 * 17 16 15 19 19 C 1.50701 * 119.99795 * 0.02562 * 17 16 15 20 20 S 1.81002 * 109.47156 * 179.97438 * 19 17 16 21 21 C 1.76193 * 100.00049 * 180.02562 * 20 19 17 22 22 H 1.08005 * 120.00026 * 359.97438 * 21 20 19 23 23 C 1.38806 * 120.00056 * 180.02562 * 21 20 19 24 24 N 1.31623 * 119.99640 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00053 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47282 * 59.99711 * 25 23 21 27 27 H 1.48497 * 109.47200 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47280 * 300.00084 * 25 23 21 29 29 H 1.08999 * 109.47471 * 299.64684 * 1 2 3 30 30 H 1.09005 * 109.47277 * 59.65096 * 1 2 3 31 31 H 1.08998 * 109.47117 * 179.64623 * 1 2 3 32 32 H 1.08996 * 109.63146 * 175.12588 * 4 2 1 33 33 H 1.08995 * 109.43098 * 54.98348 * 4 2 1 34 34 H 1.00900 * 111.00008 * 329.01865 * 7 5 4 35 35 H 1.09003 * 109.47004 * 300.00141 * 8 7 5 36 36 H 1.09003 * 109.46877 * 59.99993 * 8 7 5 37 37 H 1.07998 * 128.00805 * 0.03421 * 10 9 8 38 38 H 1.08001 * 126.77280 * 179.97438 * 11 10 9 39 39 H 1.09001 * 109.49589 * 301.41780 * 14 5 4 40 40 H 1.09000 * 109.49984 * 181.31652 * 14 5 4 41 41 H 1.09002 * 109.59128 * 185.58008 * 15 14 5 42 42 H 1.09004 * 109.58369 * 65.15588 * 15 14 5 43 43 H 1.09002 * 109.47060 * 299.99722 * 19 17 16 44 44 H 1.09001 * 109.47380 * 59.99809 * 19 17 16 45 45 H 0.97010 * 119.99946 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0489 -0.7350 -1.2452 5 6 1.6419 -2.2082 -1.1675 6 1 0.5566 -2.2820 -1.0989 7 7 2.1046 -2.9080 -2.3734 8 6 1.2799 -4.0934 -2.6432 9 6 1.7838 -4.7839 -3.8842 10 6 2.6906 -5.8669 -3.9418 11 6 2.8182 -6.1170 -5.2670 12 8 2.0347 -5.2309 -5.8975 13 7 1.4660 -4.5049 -5.1155 14 6 2.2757 -2.8497 0.0690 15 6 1.7643 -2.1398 1.3265 16 7 2.0225 -0.6995 1.1945 17 6 2.6935 -0.0314 2.1537 18 8 2.9007 1.1574 2.0328 19 6 3.1873 -0.7619 3.3758 20 16 4.0438 0.3998 4.4681 21 6 4.5020 -0.6898 5.7747 22 1 4.2355 -1.7353 5.7245 23 6 5.2045 -0.2045 6.8690 24 7 5.5288 1.0697 6.9303 25 14 5.6897 -1.3595 8.2546 26 1 6.5597 -2.4372 7.7190 27 1 6.4260 -0.6003 9.2970 28 1 4.4684 -1.9593 8.8496 29 1 -0.3634 0.5083 0.8931 30 1 -0.3634 0.5193 -0.8869 31 1 -0.3633 -1.0276 -0.0063 32 1 3.1354 -0.6594 -1.2889 33 1 1.6162 -0.2847 -2.1386 34 1 2.1172 -2.2876 -3.1690 35 1 1.3398 -4.7780 -1.7971 36 1 0.2438 -3.7890 -2.7915 37 1 3.1699 -6.3774 -3.1196 38 1 3.4310 -6.8793 -5.7250 39 1 3.3600 -2.7543 0.0130 40 1 2.0045 -3.9046 0.1110 41 1 2.2863 -2.5259 2.2021 42 1 0.6929 -2.3108 1.4324 43 1 2.3405 -1.2006 3.9038 44 1 3.8757 -1.5512 3.0740 45 1 6.0202 1.4089 7.6949 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733321371.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:43 Heat of formation + Delta-G solvation = 4.207053 kcal Electronic energy + Delta-G solvation = -26599.643092 eV Core-core repulsion = 22745.668609 eV Total energy + Delta-G solvation = -3853.974483 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.84568 -41.43201 -39.20206 -37.03775 -34.88194 -34.57906 -33.85880 -32.63554 -31.84832 -30.40468 -28.89936 -27.65731 -26.80474 -24.74763 -24.03259 -23.29602 -21.90229 -21.82816 -19.93653 -19.30093 -18.71631 -18.49916 -18.21647 -17.03027 -16.87052 -16.76713 -16.45816 -16.19316 -15.99159 -15.84926 -15.17076 -14.92874 -14.65037 -14.47991 -14.30397 -14.17742 -14.10031 -13.59976 -13.48702 -13.36187 -13.16816 -13.02209 -12.86051 -12.78797 -12.62974 -12.44392 -12.24277 -12.14065 -11.77301 -11.72108 -11.33614 -11.12309 -11.06635 -10.83002 -10.52628 -10.25983 -9.70759 -9.48156 -8.67142 -8.33772 -6.12375 0.64581 1.25746 1.29946 1.44499 1.46111 1.55846 1.58204 2.08982 2.28169 2.49644 3.00093 3.01675 3.25474 3.34076 3.56683 3.66214 3.77858 3.85642 4.00448 4.15841 4.18366 4.25323 4.27939 4.39765 4.41125 4.44677 4.48527 4.51213 4.55106 4.66747 4.69218 4.71926 4.87917 4.92336 4.98460 5.01721 5.07128 5.19302 5.22541 5.40869 5.41814 5.62485 5.94592 6.20028 6.24420 6.31301 7.07013 7.15656 7.36159 8.75184 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017130 B = 0.002119 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.129631 B =13209.913541 C =14377.821711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.136 3.864 3 H 0.072 0.928 4 C -0.120 4.120 5 C 0.097 3.903 6 H 0.068 0.932 7 N -0.684 5.684 8 C 0.140 3.860 9 C 0.006 3.994 10 C -0.233 4.233 11 C -0.049 4.049 12 O 0.083 5.917 13 N -0.398 5.398 14 C -0.115 4.115 15 C 0.099 3.901 16 N -0.601 5.601 17 C 0.533 3.467 18 O -0.569 6.569 19 C -0.122 4.122 20 S -0.154 6.154 21 C -0.545 4.545 22 H 0.084 0.916 23 C 0.012 3.988 24 N -0.912 5.912 25 Si 0.999 3.001 26 H -0.261 1.261 27 H -0.280 1.280 28 H -0.261 1.261 29 H 0.044 0.956 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.090 0.910 34 H 0.343 0.657 35 H 0.111 0.889 36 H 0.049 0.951 37 H 0.190 0.810 38 H 0.258 0.742 39 H 0.058 0.942 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.108 0.892 44 H 0.106 0.894 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.814 -18.895 -23.628 32.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.032 3.968 3 H 0.090 0.910 4 C -0.159 4.159 5 C -0.012 4.012 6 H 0.086 0.914 7 N -0.316 5.316 8 C 0.011 3.989 9 C -0.152 4.152 10 C -0.254 4.254 11 C -0.129 4.129 12 O 0.018 5.982 13 N -0.105 5.105 14 C -0.154 4.154 15 C -0.023 4.023 16 N -0.335 5.335 17 C 0.321 3.679 18 O -0.448 6.448 19 C -0.273 4.273 20 S 0.073 5.927 21 C -0.693 4.693 22 H 0.102 0.898 23 C -0.193 4.193 24 N -0.548 5.548 25 Si 0.821 3.179 26 H -0.186 1.186 27 H -0.205 1.205 28 H -0.186 1.186 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.108 0.892 34 H 0.162 0.838 35 H 0.129 0.871 36 H 0.067 0.933 37 H 0.208 0.792 38 H 0.273 0.727 39 H 0.077 0.923 40 H 0.117 0.883 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.126 0.874 44 H 0.124 0.876 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.770 -16.472 -23.981 31.023 hybrid contribution 0.094 -1.412 1.267 1.899 sum -10.676 -17.884 -22.714 30.818 Atomic orbital electron populations 1.22101 0.92991 1.03396 1.02664 1.21282 0.95369 0.96526 0.83588 0.90963 1.22076 1.01437 0.95140 0.97229 1.21473 0.98140 0.91644 0.89940 0.91407 1.60457 1.54868 1.09665 1.06622 1.20289 0.94171 0.92533 0.91900 1.23873 0.99292 0.98348 0.93712 1.23084 1.03029 1.00324 0.98989 1.26851 0.97045 0.96431 0.92602 1.84785 1.44685 1.34875 1.33826 1.73849 1.18515 1.15648 1.02467 1.21883 1.00908 1.00411 0.92207 1.22044 1.02594 0.77954 0.99735 1.48203 1.55120 1.10358 1.19812 1.20145 0.77149 0.86732 0.83919 1.90668 1.58028 1.17156 1.78948 1.23365 1.04060 1.02826 0.97063 1.85610 1.71127 1.15929 1.20041 1.23155 1.42378 0.97143 1.06592 0.89839 1.26155 0.94806 0.97408 1.00907 1.70186 1.37988 1.15230 1.31392 0.84994 0.78779 0.77671 0.76494 1.18575 1.20483 1.18556 0.93658 0.89760 0.90352 0.92381 0.89156 0.83827 0.87115 0.93250 0.79248 0.72653 0.92345 0.88342 0.89124 0.88938 0.87409 0.87587 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.03 71.98 0.65 -2.06 16 2 C 0.14 3.17 3.22 45.12 0.15 3.31 16 3 H 0.07 2.16 7.00 -2.39 -0.02 2.15 16 4 C -0.12 -2.17 4.86 30.82 0.15 -2.02 16 5 C 0.10 1.37 2.25 44.94 0.10 1.47 16 6 H 0.07 0.79 6.14 -2.38 -0.01 0.77 16 7 N -0.68 -9.79 6.30 -495.42 -3.12 -12.91 16 8 C 0.14 1.73 6.07 85.56 0.52 2.25 16 9 C 0.01 0.10 6.84 43.57 0.30 0.39 16 10 C -0.23 -2.45 11.12 22.40 0.25 -2.20 16 11 C -0.05 -0.39 12.30 67.18 0.83 0.44 16 12 O 0.08 1.26 11.20 71.64 0.80 2.07 16 13 N -0.40 -7.45 12.07 -49.56 -0.60 -8.04 16 14 C -0.12 -1.77 5.59 30.67 0.17 -1.60 16 15 C 0.10 1.84 5.92 86.36 0.51 2.35 16 16 N -0.60 -16.25 2.68 -794.21 -2.12 -18.38 16 17 C 0.53 20.59 7.72 87.66 0.68 21.26 16 18 O -0.57 -27.42 15.27 -3.03 -0.05 -27.46 16 19 C -0.12 -4.95 4.50 71.24 0.32 -4.63 16 20 S -0.15 -8.70 20.57 -56.49 -1.16 -9.86 16 21 C -0.54 -31.20 9.50 67.96 0.65 -30.56 16 22 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 23 C 0.01 0.68 5.49 84.86 0.47 1.15 16 24 N -0.91 -56.38 13.22 21.65 0.29 -56.09 16 25 Si 1.00 43.52 29.55 68.60 2.03 45.54 16 26 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 27 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 28 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 29 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.08 1.06 5.71 -2.39 -0.01 1.05 16 32 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.09 1.30 8.10 -2.39 -0.02 1.28 16 34 H 0.34 5.29 8.32 -89.69 -0.75 4.54 16 35 H 0.11 1.01 7.41 -2.39 -0.02 0.99 16 36 H 0.05 0.60 8.05 -2.39 -0.02 0.58 16 37 H 0.19 1.17 8.06 -2.91 -0.02 1.14 16 38 H 0.26 -0.51 8.06 -2.91 -0.02 -0.53 16 39 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.10 1.06 7.43 -2.39 -0.02 1.04 16 41 H 0.09 1.76 5.93 -2.39 -0.01 1.74 16 42 H 0.09 1.30 7.48 -2.38 -0.02 1.29 16 43 H 0.11 3.93 7.94 -2.39 -0.02 3.91 16 44 H 0.11 3.92 7.69 -2.40 -0.02 3.90 16 45 H 0.27 15.57 8.31 -92.70 -0.77 14.80 16 Total: -1.00 -81.32 378.62 2.06 -79.26 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.27 Total: 16.31 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: 5.73 Total: -10.44 kcal Atomic # 7 Polarization: -89.86 SS G_CDS: -5.56 Total: -95.42 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: 0.76 Total: -25.40 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: -8.70 SS G_CDS: -1.16 Total: -9.86 kcal Total: -81.32 2.06 -79.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733321371.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.467 kcal (2) G-P(sol) polarization free energy of solvation -81.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds