Wall clock time and date at job start Sat Apr 11 2020 05:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 109.46515 * 2 1 4 4 C 1.52990 * 109.47507 * 120.00059 * 2 1 3 5 5 C 1.53007 * 109.47284 * 60.00170 * 4 2 1 6 6 C 1.52997 * 109.47060 * 59.99657 * 5 4 2 7 7 C 1.53002 * 109.47547 * 300.00548 * 6 5 4 8 8 C 1.52997 * 109.46820 * 240.00391 * 2 1 3 9 9 C 1.53002 * 109.47547 * 59.99820 * 8 2 1 10 10 N 1.46495 * 109.47337 * 176.20758 * 9 8 2 11 11 C 1.36939 * 120.00145 * 175.02105 * 10 9 8 12 12 H 1.08004 * 120.00130 * 0.02562 * 11 10 9 13 13 C 1.38816 * 120.00181 * 180.02562 * 11 10 9 14 14 N 1.31612 * 120.00044 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99806 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47366 * 60.00268 * 15 13 11 17 17 H 1.48501 * 109.46711 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47260 * 299.99886 * 15 13 11 19 19 N 1.46503 * 109.47064 * 179.97438 * 8 2 1 20 20 C 1.34778 * 120.00188 * 301.91097 * 19 8 2 21 21 O 1.21643 * 119.99858 * 355.44723 * 20 19 8 22 22 C 1.47180 * 119.99952 * 175.44381 * 20 19 8 23 23 C 1.35092 * 122.48453 * 179.97438 * 22 20 19 24 24 S 1.76193 * 108.22013 * 179.97438 * 23 22 20 25 25 C 1.76059 * 90.15484 * 0.02562 * 24 23 22 26 26 O 1.35499 * 125.17704 * 180.02562 * 25 24 23 27 27 N 1.29245 * 109.64476 * 0.02562 * 25 24 23 28 28 H 1.08998 * 109.46515 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46780 * 299.99223 * 1 2 3 30 30 H 1.08993 * 109.47062 * 60.00235 * 1 2 3 31 31 H 1.09002 * 109.47453 * 300.00713 * 4 2 1 32 32 H 1.09000 * 109.47369 * 180.02562 * 4 2 1 33 33 H 1.09000 * 109.47018 * 300.00338 * 5 4 2 34 34 H 1.08993 * 109.47266 * 180.02562 * 5 4 2 35 35 H 1.08998 * 109.47258 * 179.97438 * 6 5 4 36 36 H 1.09004 * 109.47126 * 60.00391 * 6 5 4 37 37 H 1.09004 * 109.46780 * 300.00056 * 7 6 5 38 38 H 1.08993 * 109.47164 * 179.97438 * 7 6 5 39 39 H 1.08999 * 109.47022 * 296.21576 * 9 8 2 40 40 H 1.09002 * 109.46838 * 56.21030 * 9 8 2 41 41 H 0.97001 * 120.00243 * 355.02459 * 10 9 8 42 42 H 0.96998 * 120.00241 * 179.97438 * 14 13 11 43 43 H 0.97002 * 120.00319 * 121.90140 * 19 8 2 44 44 H 1.08002 * 125.89448 * 0.24897 * 23 22 20 45 45 H 0.96700 * 113.99603 * 359.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0402 -0.7212 1.2491 5 6 1.5302 -2.1638 1.2492 6 6 2.0402 -2.8850 -0.0001 7 6 1.5301 -2.1637 -1.2494 8 6 2.0400 -0.7212 -1.2493 9 6 1.5300 0.0001 -2.4985 10 7 2.0914 -0.6357 -3.6930 11 6 1.6954 -0.2247 -4.9377 12 1 0.9694 0.5685 -5.0389 13 6 2.2270 -0.8275 -6.0695 14 7 3.1113 -1.7944 -5.9463 15 14 1.6861 -0.2672 -7.7674 16 1 2.0112 1.1713 -7.9410 17 1 2.3955 -1.0637 -8.8007 18 1 0.2212 -0.4644 -7.9105 19 7 3.5050 -0.7207 -1.2496 20 6 4.1786 0.4461 -1.2110 21 8 3.5729 1.4999 -1.2594 22 6 5.6469 0.4452 -1.1101 23 6 6.3720 1.5843 -1.0682 24 16 8.0751 1.1491 -0.9474 25 6 7.6450 -0.5581 -0.9656 26 8 8.5256 -1.5856 -0.8972 27 7 6.3616 -0.6819 -1.0541 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3632 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6768 -0.2075 2.1392 32 1 3.1302 -0.7208 1.2493 33 1 0.4402 -2.1639 1.2492 34 1 1.8932 -2.6775 2.1393 35 1 1.6773 -3.9128 0.0001 36 1 3.1302 -2.8849 -0.0002 37 1 0.4401 -2.1637 -1.2493 38 1 1.8938 -2.6772 -2.1393 39 1 0.4421 -0.0583 -2.5331 40 1 1.8368 1.0455 -2.4652 41 1 2.7437 -1.3479 -3.6022 42 1 3.4825 -2.2159 -6.7371 43 1 3.9904 -1.5601 -1.2776 44 1 5.9758 2.5886 -1.0986 45 1 9.4498 -1.3081 -0.8351 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753533763.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:59 Heat of formation + Delta-G solvation = -16.653079 kcal Electronic energy + Delta-G solvation = -28905.938966 eV Core-core repulsion = 25051.059920 eV Total energy + Delta-G solvation = -3854.879046 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -40.76692 -39.71558 -38.21063 -37.09217 -34.64708 -33.20236 -31.96836 -31.12775 -30.06574 -29.39107 -26.69432 -25.28982 -24.83343 -22.92578 -22.46149 -21.88010 -20.45685 -20.31960 -19.51126 -18.06869 -17.41438 -17.02720 -16.53654 -15.77252 -15.60319 -15.43670 -15.27045 -14.60808 -14.29777 -14.21215 -13.73775 -13.62716 -13.16362 -12.97402 -12.93433 -12.60905 -12.47268 -12.29567 -12.21654 -12.07467 -11.84212 -11.37840 -11.31582 -11.04758 -10.85745 -10.74479 -10.67375 -10.19731 -10.10120 -9.97097 -9.94339 -9.83324 -9.66981 -9.56184 -9.28899 -8.73605 -8.68504 -8.37173 -6.74511 -5.64907 -2.91032 0.48991 0.69773 1.24398 2.11019 2.73371 3.50668 3.54511 3.55811 3.58772 3.70140 4.67216 4.68846 4.92997 4.96672 5.00992 5.14820 5.25769 5.36217 5.41872 5.58091 5.61140 5.69759 5.77067 5.81147 5.85840 5.90263 5.92591 6.07914 6.17650 6.25348 6.29944 6.30894 6.40231 6.41667 6.54997 6.61859 6.62466 6.68294 6.82863 7.00194 7.21756 7.46661 7.80829 8.01423 8.54334 8.61156 9.65335 10.25364 10.60724 11.58078 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007752 B = 0.005170 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3611.247722 B = 5414.840280 C = 7672.963584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.100 4.100 3 H 0.090 0.910 4 C -0.109 4.109 5 C -0.118 4.118 6 C -0.121 4.121 7 C -0.120 4.120 8 C 0.181 3.819 9 C 0.140 3.860 10 N -0.726 5.726 11 C -0.229 4.229 12 H 0.067 0.933 13 C -0.016 4.016 14 N -0.935 5.935 15 Si 0.904 3.096 16 H -0.288 1.288 17 H -0.293 1.293 18 H -0.287 1.287 19 N -0.686 5.686 20 C 0.599 3.401 21 O -0.525 6.525 22 C 0.055 3.945 23 C -0.179 4.179 24 S 0.035 5.965 25 C 0.289 3.711 26 O -0.419 6.419 27 N -0.466 5.466 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.028 0.972 40 H 0.042 0.958 41 H 0.382 0.618 42 H 0.253 0.747 43 H 0.406 0.594 44 H 0.194 0.806 45 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.273 1.610 17.713 19.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 H 0.108 0.892 4 C -0.147 4.147 5 C -0.156 4.156 6 C -0.158 4.158 7 C -0.158 4.158 8 C 0.095 3.905 9 C 0.012 3.988 10 N -0.370 5.370 11 C -0.361 4.361 12 H 0.085 0.915 13 C -0.212 4.212 14 N -0.584 5.584 15 Si 0.736 3.264 16 H -0.215 1.215 17 H -0.219 1.219 18 H -0.214 1.214 19 N -0.336 5.336 20 C 0.381 3.619 21 O -0.402 6.402 22 C -0.075 4.075 23 C -0.320 4.320 24 S 0.282 5.718 25 C -0.032 4.032 26 O -0.218 6.218 27 N -0.196 5.196 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.046 0.954 40 H 0.060 0.940 41 H 0.216 0.784 42 H 0.063 0.937 43 H 0.243 0.757 44 H 0.211 0.789 45 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 8.025 2.017 17.572 19.422 hybrid contribution 0.149 -0.102 -1.201 1.214 sum 8.174 1.915 16.371 18.398 Atomic orbital electron populations 1.21954 0.94872 1.01946 1.01698 1.21429 0.95990 1.01022 0.93507 0.89179 1.21500 1.00501 0.95437 0.97272 1.21561 1.00830 0.95722 0.97472 1.21564 1.00789 0.98781 0.94682 1.21806 1.01698 0.93930 0.98384 1.20624 0.78334 0.96014 0.95530 1.21173 0.95844 0.96550 0.85237 1.42241 1.51153 1.43397 1.00216 1.19183 1.18861 1.14382 0.83664 0.91459 1.24677 0.99820 0.99143 0.97533 1.69646 1.33050 1.27574 1.28179 0.86303 0.77800 0.77735 0.84594 1.21481 1.21855 1.21401 1.45754 1.06955 1.08300 1.72620 1.16824 0.83607 0.84629 0.76826 1.90767 1.67713 1.31352 1.50349 1.20239 0.96112 0.85970 1.05137 1.26769 0.92475 1.04205 1.08527 1.85224 1.08887 1.04304 1.73434 1.25307 0.90051 0.88147 0.99687 1.84746 1.19808 1.27466 1.89747 1.66172 1.02565 1.30219 1.20652 0.92216 0.93130 0.91946 0.92556 0.92351 0.91774 0.92730 0.92041 0.92107 0.90228 0.90092 0.95387 0.94044 0.78399 0.93729 0.75738 0.78886 0.72922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 8.15 37.16 0.30 -1.66 16 2 C -0.10 -1.49 2.01 -90.62 -0.18 -1.67 16 3 H 0.09 1.53 6.18 -51.93 -0.32 1.21 16 4 C -0.11 -1.40 5.29 -26.73 -0.14 -1.54 16 5 C -0.12 -1.37 5.65 -26.73 -0.15 -1.53 16 6 C -0.12 -1.55 5.75 -26.73 -0.15 -1.71 16 7 C -0.12 -1.90 4.36 -26.73 -0.12 -2.01 16 8 C 0.18 3.10 0.09 -131.82 -0.01 3.08 16 9 C 0.14 3.03 4.45 -4.04 -0.02 3.01 16 10 N -0.73 -18.93 5.12 -59.91 -0.31 -19.23 16 11 C -0.23 -6.67 9.99 -15.06 -0.15 -6.82 16 12 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 13 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 14 N -0.94 -28.96 13.06 55.49 0.72 -28.23 16 15 Si 0.90 23.26 29.55 -169.99 -5.02 18.23 16 16 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 17 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 18 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 19 N -0.69 -11.99 3.44 -48.74 -0.17 -12.16 16 20 C 0.60 11.02 7.20 -12.63 -0.09 10.93 16 21 O -0.52 -10.66 12.93 5.24 0.07 -10.60 16 22 C 0.06 0.90 6.67 -84.59 -0.56 0.33 16 23 C -0.18 -2.40 10.84 29.61 0.32 -2.08 16 24 S 0.04 0.35 23.38 -107.50 -2.51 -2.17 16 25 C 0.29 3.50 8.91 51.67 0.46 3.96 16 26 O -0.42 -3.87 13.64 -18.19 -0.25 -4.11 16 27 N -0.47 -7.26 10.02 -11.34 -0.11 -7.37 16 28 H 0.06 0.75 4.81 -51.93 -0.25 0.50 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.90 6.52 -51.93 -0.34 0.56 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.80 7.61 -51.93 -0.39 0.41 16 33 H 0.06 0.71 6.43 -51.93 -0.33 0.38 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.80 6.90 -51.93 -0.36 0.45 16 37 H 0.08 1.21 6.43 -51.93 -0.33 0.88 16 38 H 0.08 1.49 7.21 -51.93 -0.37 1.12 16 39 H 0.03 0.61 6.64 -51.93 -0.34 0.26 16 40 H 0.04 1.00 6.26 -51.93 -0.33 0.67 16 41 H 0.38 10.39 6.57 -40.82 -0.27 10.12 16 42 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 43 H 0.41 6.97 6.87 -40.82 -0.28 6.69 16 44 H 0.19 2.37 8.01 -52.49 -0.42 1.95 16 45 H 0.42 1.11 9.03 45.56 0.41 1.52 16 LS Contribution 361.49 15.07 5.45 5.45 Total: -1.00 -35.15 361.49 -7.90 -43.05 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: -5.17 Total: 15.43 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -0.59 Total: 1.71 kcal Atomic # 7 Polarization: -67.13 SS G_CDS: 0.14 Total: -67.00 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.18 Total: -14.71 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -5.02 Total: 18.23 kcal Atomic # 16 Polarization: 0.35 SS G_CDS: -2.51 Total: -2.17 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.15 -7.90 -43.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753533763.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.397 kcal (2) G-P(sol) polarization free energy of solvation -35.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds