Wall clock time and date at job start Sat Apr 11 2020 05:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 109.46515 * 2 1 4 4 C 1.52990 * 109.47507 * 120.00059 * 2 1 3 5 5 C 1.53007 * 109.47284 * 60.00170 * 4 2 1 6 6 C 1.52997 * 109.47060 * 59.99657 * 5 4 2 7 7 C 1.53002 * 109.47547 * 300.00548 * 6 5 4 8 8 C 1.52997 * 109.46820 * 240.00391 * 2 1 3 9 9 C 1.53002 * 109.47547 * 59.99820 * 8 2 1 10 10 N 1.46495 * 109.47337 * 176.20758 * 9 8 2 11 11 C 1.36939 * 120.00145 * 175.02105 * 10 9 8 12 12 H 1.08004 * 120.00130 * 0.02562 * 11 10 9 13 13 C 1.38816 * 120.00181 * 180.02562 * 11 10 9 14 14 N 1.31612 * 120.00044 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99806 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47366 * 60.00268 * 15 13 11 17 17 H 1.48501 * 109.46711 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47260 * 299.99886 * 15 13 11 19 19 N 1.46503 * 109.47064 * 179.97438 * 8 2 1 20 20 C 1.34778 * 120.00188 * 301.91097 * 19 8 2 21 21 O 1.21643 * 119.99858 * 355.44723 * 20 19 8 22 22 C 1.47180 * 119.99952 * 175.44381 * 20 19 8 23 23 C 1.35092 * 122.48453 * 179.97438 * 22 20 19 24 24 S 1.76193 * 108.22013 * 179.97438 * 23 22 20 25 25 C 1.76059 * 90.15484 * 0.02562 * 24 23 22 26 26 O 1.35499 * 125.17704 * 180.02562 * 25 24 23 27 27 N 1.29245 * 109.64476 * 0.02562 * 25 24 23 28 28 H 1.08998 * 109.46515 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46780 * 299.99223 * 1 2 3 30 30 H 1.08993 * 109.47062 * 60.00235 * 1 2 3 31 31 H 1.09002 * 109.47453 * 300.00713 * 4 2 1 32 32 H 1.09000 * 109.47369 * 180.02562 * 4 2 1 33 33 H 1.09000 * 109.47018 * 300.00338 * 5 4 2 34 34 H 1.08993 * 109.47266 * 180.02562 * 5 4 2 35 35 H 1.08998 * 109.47258 * 179.97438 * 6 5 4 36 36 H 1.09004 * 109.47126 * 60.00391 * 6 5 4 37 37 H 1.09004 * 109.46780 * 300.00056 * 7 6 5 38 38 H 1.08993 * 109.47164 * 179.97438 * 7 6 5 39 39 H 1.08999 * 109.47022 * 296.21576 * 9 8 2 40 40 H 1.09002 * 109.46838 * 56.21030 * 9 8 2 41 41 H 0.97001 * 120.00243 * 355.02459 * 10 9 8 42 42 H 0.96998 * 120.00241 * 179.97438 * 14 13 11 43 43 H 0.97002 * 120.00319 * 121.90140 * 19 8 2 44 44 H 1.08002 * 125.89448 * 0.24897 * 23 22 20 45 45 H 0.96700 * 113.99603 * 359.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0402 -0.7212 1.2491 5 6 1.5302 -2.1638 1.2492 6 6 2.0402 -2.8850 -0.0001 7 6 1.5301 -2.1637 -1.2494 8 6 2.0400 -0.7212 -1.2493 9 6 1.5300 0.0001 -2.4985 10 7 2.0914 -0.6357 -3.6930 11 6 1.6954 -0.2247 -4.9377 12 1 0.9694 0.5685 -5.0389 13 6 2.2270 -0.8275 -6.0695 14 7 3.1113 -1.7944 -5.9463 15 14 1.6861 -0.2672 -7.7674 16 1 2.0112 1.1713 -7.9410 17 1 2.3955 -1.0637 -8.8007 18 1 0.2212 -0.4644 -7.9105 19 7 3.5050 -0.7207 -1.2496 20 6 4.1786 0.4461 -1.2110 21 8 3.5729 1.4999 -1.2594 22 6 5.6469 0.4452 -1.1101 23 6 6.3720 1.5843 -1.0682 24 16 8.0751 1.1491 -0.9474 25 6 7.6450 -0.5581 -0.9656 26 8 8.5256 -1.5856 -0.8972 27 7 6.3616 -0.6819 -1.0541 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3632 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6768 -0.2075 2.1392 32 1 3.1302 -0.7208 1.2493 33 1 0.4402 -2.1639 1.2492 34 1 1.8932 -2.6775 2.1393 35 1 1.6773 -3.9128 0.0001 36 1 3.1302 -2.8849 -0.0002 37 1 0.4401 -2.1637 -1.2493 38 1 1.8938 -2.6772 -2.1393 39 1 0.4421 -0.0583 -2.5331 40 1 1.8368 1.0455 -2.4652 41 1 2.7437 -1.3479 -3.6022 42 1 3.4825 -2.2159 -6.7371 43 1 3.9904 -1.5601 -1.2776 44 1 5.9758 2.5886 -1.0986 45 1 9.4498 -1.3081 -0.8351 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753533763.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:58 Heat of formation + Delta-G solvation = -45.194802 kcal Electronic energy + Delta-G solvation = -28907.176628 eV Core-core repulsion = 25051.059920 eV Total energy + Delta-G solvation = -3856.116708 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.05951 -40.77000 -39.27201 -38.17171 -36.46072 -34.78018 -33.35013 -32.77824 -31.25086 -30.85191 -27.98333 -26.87372 -26.02628 -24.71602 -23.67465 -23.07622 -21.82812 -21.22500 -20.70367 -19.50506 -19.02095 -18.47972 -17.62263 -16.88629 -16.82771 -16.66919 -16.46532 -16.18365 -15.88629 -15.46166 -15.22239 -15.05585 -14.72599 -14.56990 -13.94216 -13.89011 -13.74825 -13.57444 -13.39819 -13.17818 -13.09191 -12.90946 -12.80685 -12.67788 -12.44532 -12.27164 -12.13253 -11.94791 -11.81332 -11.37365 -11.18393 -11.09453 -10.90138 -10.87444 -10.58476 -10.51421 -9.89686 -9.58292 -8.92462 -7.93238 -5.20048 -0.52792 -0.20052 0.25373 0.97500 1.43279 1.46981 1.52925 1.91767 2.30864 2.40476 2.55995 3.38649 3.55679 3.73217 3.82028 3.86231 4.10616 4.14265 4.15533 4.23605 4.37205 4.45971 4.52212 4.56362 4.69633 4.74994 4.80308 4.85620 4.90997 5.00436 5.13041 5.16420 5.19052 5.25988 5.27849 5.40746 5.43680 5.47003 5.50841 5.58590 5.75890 5.80036 6.28197 6.50953 6.73768 7.23416 7.34899 8.11736 8.37972 9.29722 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007752 B = 0.005170 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3611.247722 B = 5414.840280 C = 7672.963584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 H 0.065 0.935 4 C -0.103 4.103 5 C -0.112 4.112 6 C -0.114 4.114 7 C -0.114 4.114 8 C 0.185 3.815 9 C 0.143 3.857 10 N -0.731 5.731 11 C -0.242 4.242 12 H 0.067 0.933 13 C -0.073 4.073 14 N -0.966 5.966 15 Si 0.971 3.029 16 H -0.284 1.284 17 H -0.292 1.292 18 H -0.276 1.276 19 N -0.684 5.684 20 C 0.590 3.410 21 O -0.556 6.556 22 C 0.026 3.974 23 C -0.195 4.195 24 S 0.142 5.858 25 C 0.283 3.717 26 O -0.422 6.422 27 N -0.508 5.508 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.043 0.957 31 H 0.075 0.925 32 H 0.045 0.955 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.086 0.914 38 H 0.048 0.952 39 H 0.031 0.969 40 H 0.016 0.984 41 H 0.374 0.626 42 H 0.250 0.750 43 H 0.406 0.594 44 H 0.198 0.802 45 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.047 1.518 19.116 21.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 H 0.084 0.916 4 C -0.141 4.141 5 C -0.149 4.149 6 C -0.152 4.152 7 C -0.152 4.152 8 C 0.099 3.901 9 C 0.016 3.984 10 N -0.374 5.374 11 C -0.374 4.374 12 H 0.085 0.915 13 C -0.265 4.265 14 N -0.617 5.617 15 Si 0.800 3.200 16 H -0.210 1.210 17 H -0.218 1.218 18 H -0.202 1.202 19 N -0.333 5.333 20 C 0.374 3.626 21 O -0.436 6.436 22 C -0.104 4.104 23 C -0.337 4.337 24 S 0.390 5.610 25 C -0.038 4.038 26 O -0.225 6.225 27 N -0.240 5.240 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.104 0.896 38 H 0.066 0.934 39 H 0.049 0.951 40 H 0.034 0.966 41 H 0.207 0.793 42 H 0.059 0.941 43 H 0.243 0.757 44 H 0.215 0.785 45 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges 8.835 1.933 19.006 21.048 hybrid contribution 0.052 0.000 -1.618 1.619 sum 8.887 1.933 17.388 19.623 Atomic orbital electron populations 1.21938 0.93452 1.02814 1.01932 1.21353 0.97080 0.99573 0.93385 0.91649 1.21454 0.99743 0.96367 0.96514 1.21542 1.01543 0.94494 0.97316 1.21530 1.00429 0.99451 0.93775 1.21730 1.01942 0.92807 0.98720 1.20577 0.78426 0.96686 0.94391 1.21217 0.95735 0.95438 0.86030 1.42347 1.51017 1.43231 1.00811 1.19545 1.18616 1.14143 0.85132 0.91538 1.25480 1.00259 0.99553 1.01224 1.69811 1.34290 1.28770 1.28839 0.85251 0.77775 0.77178 0.79797 1.21041 1.21850 1.20214 1.45765 1.07017 1.08252 1.72280 1.17282 0.85000 0.84259 0.76081 1.90730 1.68806 1.32151 1.51907 1.19919 0.95115 0.87325 1.08045 1.27098 0.95522 1.03912 1.07122 1.84798 1.04347 1.00711 1.71193 1.25460 0.89859 0.90067 0.98401 1.84732 1.21405 1.27242 1.89150 1.66063 1.04511 1.30704 1.22719 0.90942 0.90875 0.93776 0.90664 0.93611 0.90492 0.90574 0.90372 0.92722 0.89574 0.93365 0.95146 0.96644 0.79349 0.94144 0.75738 0.78503 0.69812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 8.15 71.99 0.59 -3.13 16 2 C -0.09 -2.83 2.01 -10.79 -0.02 -2.85 16 3 H 0.07 2.32 6.18 -2.39 -0.01 2.30 16 4 C -0.10 -2.51 5.29 30.59 0.16 -2.35 16 5 C -0.11 -2.31 5.65 30.60 0.17 -2.14 16 6 C -0.11 -2.82 5.75 30.59 0.18 -2.65 16 7 C -0.11 -3.66 4.36 30.59 0.13 -3.52 16 8 C 0.18 6.59 0.09 3.60 0.00 6.59 16 9 C 0.14 6.52 4.45 86.38 0.38 6.91 16 10 N -0.73 -39.89 5.12 -343.45 -1.76 -41.65 16 11 C -0.24 -14.50 9.99 84.03 0.84 -13.67 16 12 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 13 C -0.07 -4.40 5.50 84.86 0.47 -3.93 16 14 N -0.97 -61.29 13.06 21.65 0.28 -61.01 16 15 Si 0.97 48.51 29.55 68.60 2.03 50.53 16 16 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 17 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 18 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 19 N -0.68 -25.24 3.44 -426.36 -1.47 -26.71 16 20 C 0.59 22.97 7.20 86.59 0.62 23.59 16 21 O -0.56 -24.09 12.93 -4.17 -0.05 -24.15 16 22 C 0.03 0.88 6.67 40.50 0.27 1.15 16 23 C -0.19 -5.21 10.84 67.10 0.73 -4.48 16 24 S 0.14 2.45 23.38 -56.49 -1.32 1.13 16 25 C 0.28 6.51 8.91 130.62 1.16 7.67 16 26 O -0.42 -7.01 13.64 -88.01 -1.20 -8.21 16 27 N -0.51 -16.07 10.02 -304.24 -3.05 -19.12 16 28 H 0.07 1.68 4.81 -2.39 -0.01 1.67 16 29 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.04 1.29 6.52 -2.39 -0.02 1.27 16 31 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.05 1.24 7.61 -2.39 -0.02 1.22 16 33 H 0.08 1.44 6.43 -2.39 -0.02 1.42 16 34 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.05 1.43 6.90 -2.39 -0.02 1.41 16 37 H 0.09 2.60 6.43 -2.39 -0.02 2.58 16 38 H 0.05 1.86 7.21 -2.39 -0.02 1.84 16 39 H 0.03 1.37 6.64 -2.39 -0.02 1.35 16 40 H 0.02 0.80 6.26 -2.39 -0.01 0.78 16 41 H 0.37 21.40 6.57 -92.71 -0.61 20.79 16 42 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 43 H 0.41 14.81 6.87 -92.71 -0.64 14.17 16 44 H 0.20 4.90 8.01 -2.91 -0.02 4.88 16 45 H 0.44 1.09 9.03 -74.06 -0.67 0.42 16 Total: -1.00 -79.11 361.49 -1.70 -80.81 By element: Atomic # 1 Polarization: 42.03 SS G_CDS: -0.84 Total: 41.19 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: 5.68 Total: 7.18 kcal Atomic # 7 Polarization: -142.50 SS G_CDS: -5.99 Total: -148.49 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -1.25 Total: -32.35 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 2.03 Total: 50.53 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -1.32 Total: 1.13 kcal Total: -79.11 -1.70 -80.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753533763.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.614 kcal (2) G-P(sol) polarization free energy of solvation -79.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds