Wall clock time and date at job start Sat Apr 11 2020 05:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09003 * 109.46983 * 2 1 4 4 C 1.53000 * 109.47398 * 239.99849 * 2 1 3 5 5 C 1.52997 * 109.46770 * 299.99800 * 4 2 1 6 6 C 1.52996 * 109.47627 * 299.99991 * 5 4 2 7 7 C 1.53003 * 109.47239 * 59.99673 * 6 5 4 8 8 C 1.52996 * 109.47452 * 300.00662 * 7 6 5 9 9 C 1.52991 * 109.47295 * 179.97438 * 8 7 6 10 10 N 1.46505 * 109.47220 * 65.46459 * 9 8 7 11 11 C 1.36936 * 120.00030 * 175.09952 * 10 9 8 12 12 H 1.08007 * 119.99927 * 0.02562 * 11 10 9 13 13 C 1.38807 * 119.99919 * 180.02562 * 11 10 9 14 14 N 1.31621 * 120.00034 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00245 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47215 * 89.99674 * 15 13 11 17 17 H 1.48493 * 109.47545 * 210.00080 * 15 13 11 18 18 H 1.48507 * 109.47183 * 329.99993 * 15 13 11 19 19 N 1.46502 * 109.46819 * 299.99664 * 8 7 6 20 20 C 1.34780 * 119.99827 * 178.38972 * 19 8 7 21 21 O 1.21647 * 119.99994 * 5.05821 * 20 19 8 22 22 C 1.47179 * 119.99766 * 185.05860 * 20 19 8 23 23 C 1.35094 * 122.48334 * 180.02562 * 22 20 19 24 24 S 1.76188 * 108.21536 * 180.02562 * 23 22 20 25 25 C 1.76054 * 90.16073 * 0.02562 * 24 23 22 26 26 O 1.35493 * 125.17993 * 180.02562 * 25 24 23 27 27 N 1.29248 * 109.63804 * 359.72983 * 25 24 23 28 28 H 1.09004 * 109.47244 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47341 * 300.00418 * 1 2 3 30 30 H 1.08998 * 109.47155 * 60.00300 * 1 2 3 31 31 H 1.08998 * 109.47089 * 59.99810 * 4 2 1 32 32 H 1.09003 * 109.47052 * 179.97438 * 4 2 1 33 33 H 1.09003 * 109.47191 * 60.00259 * 5 4 2 34 34 H 1.09000 * 109.47017 * 180.02562 * 5 4 2 35 35 H 1.08994 * 109.47749 * 180.02562 * 6 5 4 36 36 H 1.09003 * 109.47054 * 300.00352 * 6 5 4 37 37 H 1.09003 * 109.46543 * 60.00366 * 7 6 5 38 38 H 1.09000 * 109.47026 * 179.97438 * 7 6 5 39 39 H 1.08999 * 109.47583 * 185.46398 * 9 8 7 40 40 H 1.09004 * 109.47443 * 305.46724 * 9 8 7 41 41 H 0.97003 * 119.99664 * 355.10521 * 10 9 8 42 42 H 0.96998 * 119.99885 * 179.97438 * 14 13 11 43 43 H 0.96999 * 119.99872 * 358.38967 * 19 8 7 44 44 H 1.07997 * 125.89169 * 0.02562 * 23 22 20 45 45 H 0.96708 * 114.00079 * 359.97066 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5300 -2.1637 -1.2491 6 6 2.0400 -2.8850 0.0002 7 6 1.5300 -2.1636 1.2494 8 6 2.0399 -0.7212 1.2494 9 6 1.5295 0.0003 2.4982 10 7 2.1218 -0.6100 3.6912 11 6 1.8894 -0.0656 4.9260 12 1 1.2690 0.8135 5.0205 13 6 2.4511 -0.6434 6.0561 14 7 3.2075 -1.7144 5.9409 15 14 2.1335 0.0987 7.7407 16 1 0.9193 -0.5183 8.3325 17 1 3.2998 -0.1587 8.6230 18 1 1.9287 1.5634 7.6057 19 7 3.5049 -0.7212 1.2494 20 6 4.1788 0.4456 1.2166 21 8 3.5741 1.4993 1.2798 22 6 5.6463 0.4449 1.1042 23 6 6.3717 1.5840 1.0675 24 16 8.0734 1.1491 0.9292 25 6 7.6425 -0.5579 0.9329 26 8 8.5219 -1.5852 0.8481 27 7 6.3601 -0.6820 1.0351 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6766 -0.2075 -2.1392 32 1 3.1300 -0.7208 -1.2494 33 1 0.4400 -2.1638 -1.2491 34 1 1.8938 -2.6778 -2.1388 35 1 1.6770 -3.9127 0.0000 36 1 3.1300 -2.8849 0.0002 37 1 0.4400 -2.1637 1.2494 38 1 1.8929 -2.6778 2.1394 39 1 1.8106 1.0523 2.4506 40 1 0.4438 -0.0838 2.5482 41 1 2.6787 -1.3997 3.6062 42 1 3.6003 -2.1180 6.7306 43 1 3.9899 -1.5609 1.2730 44 1 5.9766 2.5880 1.1147 45 1 9.4459 -1.3076 0.7818 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753533765.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:06 Heat of formation + Delta-G solvation = -16.766959 kcal Electronic energy + Delta-G solvation = -28943.677062 eV Core-core repulsion = 25088.793077 eV Total energy + Delta-G solvation = -3854.883985 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.75135 -39.70612 -38.19910 -37.07526 -34.64261 -33.18576 -31.97380 -31.12857 -30.04734 -29.39899 -26.68842 -25.28172 -24.82832 -22.93518 -22.44667 -21.88972 -20.45715 -20.30591 -19.49835 -18.05591 -17.39087 -17.03308 -16.52618 -15.75798 -15.59197 -15.44310 -15.27260 -14.59054 -14.29368 -14.20174 -13.73292 -13.62172 -13.16906 -12.94835 -12.89382 -12.60831 -12.48964 -12.30120 -12.21488 -12.09399 -11.84410 -11.39267 -11.33612 -11.02437 -10.87003 -10.74349 -10.68115 -10.19315 -10.06986 -9.97908 -9.94256 -9.83374 -9.65457 -9.55394 -9.26443 -8.71775 -8.69250 -8.35197 -6.74523 -5.64776 -2.90719 0.50653 0.71380 1.26058 2.13133 2.74728 3.49935 3.55039 3.57032 3.60532 3.73059 4.68034 4.69878 4.92584 4.95788 5.00428 5.16748 5.27270 5.35390 5.40888 5.57473 5.60646 5.70364 5.76101 5.82094 5.84976 5.89725 5.91883 6.07358 6.17020 6.24782 6.28639 6.29648 6.39817 6.41727 6.53967 6.61537 6.62179 6.69894 6.81267 7.00303 7.21432 7.48224 7.82044 8.03538 8.54505 8.63908 9.65597 10.25337 10.60643 11.58277 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007494 B = 0.005421 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3735.588142 B = 5164.269985 C = 7545.447473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 H 0.089 0.911 4 C -0.110 4.110 5 C -0.118 4.118 6 C -0.120 4.120 7 C -0.121 4.121 8 C 0.181 3.819 9 C 0.140 3.860 10 N -0.725 5.725 11 C -0.227 4.227 12 H 0.068 0.932 13 C -0.017 4.017 14 N -0.935 5.935 15 Si 0.903 3.097 16 H -0.291 1.291 17 H -0.293 1.293 18 H -0.283 1.283 19 N -0.685 5.685 20 C 0.600 3.400 21 O -0.525 6.525 22 C 0.056 3.944 23 C -0.179 4.179 24 S 0.035 5.965 25 C 0.289 3.711 26 O -0.419 6.419 27 N -0.466 5.466 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.047 0.953 40 H 0.022 0.978 41 H 0.382 0.618 42 H 0.252 0.748 43 H 0.406 0.594 44 H 0.194 0.806 45 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.775 1.265 -17.807 19.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 H 0.108 0.892 4 C -0.147 4.147 5 C -0.156 4.156 6 C -0.158 4.158 7 C -0.159 4.159 8 C 0.095 3.905 9 C 0.012 3.988 10 N -0.369 5.369 11 C -0.359 4.359 12 H 0.086 0.914 13 C -0.212 4.212 14 N -0.585 5.585 15 Si 0.735 3.265 16 H -0.219 1.219 17 H -0.220 1.220 18 H -0.209 1.209 19 N -0.335 5.335 20 C 0.382 3.618 21 O -0.402 6.402 22 C -0.074 4.074 23 C -0.320 4.320 24 S 0.281 5.719 25 C -0.032 4.032 26 O -0.218 6.218 27 N -0.196 5.196 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.065 0.935 40 H 0.040 0.960 41 H 0.216 0.784 42 H 0.062 0.938 43 H 0.242 0.758 44 H 0.211 0.789 45 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 7.553 1.707 -17.663 19.286 hybrid contribution 0.248 -0.048 1.209 1.235 sum 7.801 1.659 -16.454 18.285 Atomic orbital electron populations 1.21949 0.94871 1.01927 1.01711 1.21429 0.95987 1.00984 0.93517 0.89234 1.21503 1.00530 0.95429 0.97273 1.21560 1.00820 0.95726 0.97466 1.21560 1.00826 0.98761 0.94655 1.21817 1.01703 0.94009 0.98383 1.20602 0.78475 0.95900 0.95541 1.21170 0.95329 0.97060 0.85227 1.42244 1.59914 1.33642 1.01111 1.19223 1.24289 1.08105 0.84243 0.91425 1.24673 1.00661 0.98303 0.97595 1.69659 1.37765 1.22849 1.28186 0.86231 0.77011 0.78449 0.84812 1.21890 1.21990 1.20909 1.45709 1.06841 1.08265 1.72684 1.16802 0.83570 0.84626 0.76785 1.90766 1.67742 1.31396 1.50271 1.20242 0.96146 0.85951 1.05047 1.26766 0.92457 1.04219 1.08541 1.85212 1.09002 1.04337 1.73360 1.25304 0.90077 0.88144 0.99707 1.84743 1.19895 1.27499 1.89653 1.66169 1.02620 1.30233 1.20565 0.92227 0.91945 0.93129 0.92548 0.92325 0.91767 0.92713 0.92030 0.92068 0.90207 0.90246 0.93472 0.96020 0.78438 0.93808 0.75773 0.78893 0.72932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 8.15 37.15 0.30 -1.64 16 2 C -0.10 -1.48 2.01 -90.62 -0.18 -1.66 16 3 H 0.09 1.52 6.22 -51.93 -0.32 1.20 16 4 C -0.11 -1.40 5.29 -26.73 -0.14 -1.54 16 5 C -0.12 -1.36 5.65 -26.73 -0.15 -1.51 16 6 C -0.12 -1.54 5.75 -26.73 -0.15 -1.69 16 7 C -0.12 -1.89 4.37 -26.73 -0.12 -2.00 16 8 C 0.18 3.09 0.09 -131.82 -0.01 3.08 16 9 C 0.14 3.03 4.36 -4.04 -0.02 3.01 16 10 N -0.72 -18.89 5.19 -59.91 -0.31 -19.20 16 11 C -0.23 -6.62 9.99 -15.06 -0.15 -6.77 16 12 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 13 C -0.02 -0.51 5.50 -17.43 -0.10 -0.60 16 14 N -0.93 -28.97 13.06 55.49 0.72 -28.25 16 15 Si 0.90 23.34 29.55 -169.99 -5.02 18.31 16 16 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 17 H -0.29 -7.63 7.11 56.52 0.40 -7.22 16 18 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 19 N -0.69 -12.05 3.50 -48.74 -0.17 -12.22 16 20 C 0.60 11.16 7.19 -12.63 -0.09 11.07 16 21 O -0.52 -10.79 12.96 5.24 0.07 -10.72 16 22 C 0.06 0.92 6.67 -84.60 -0.56 0.36 16 23 C -0.18 -2.45 10.84 29.61 0.32 -2.13 16 24 S 0.03 0.35 23.38 -107.50 -2.51 -2.17 16 25 C 0.29 3.55 8.91 51.68 0.46 4.01 16 26 O -0.42 -3.93 13.64 -18.17 -0.25 -4.17 16 27 N -0.47 -7.34 10.02 -11.34 -0.11 -7.46 16 28 H 0.06 0.74 4.81 -51.93 -0.25 0.49 16 29 H 0.06 0.90 6.55 -51.93 -0.34 0.56 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.81 7.61 -51.93 -0.39 0.41 16 33 H 0.06 0.70 6.43 -51.93 -0.33 0.37 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.80 6.89 -51.93 -0.36 0.45 16 37 H 0.08 1.19 6.43 -51.93 -0.33 0.86 16 38 H 0.08 1.44 7.11 -51.93 -0.37 1.07 16 39 H 0.05 1.13 6.29 -51.93 -0.33 0.80 16 40 H 0.02 0.47 6.73 -51.93 -0.35 0.12 16 41 H 0.38 10.35 6.47 -40.82 -0.26 10.09 16 42 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 43 H 0.41 7.01 6.86 -40.82 -0.28 6.73 16 44 H 0.19 2.42 8.01 -52.49 -0.42 2.00 16 45 H 0.42 1.17 9.03 45.56 0.41 1.58 16 LS Contribution 361.54 15.07 5.45 5.45 Total: -1.00 -35.26 361.54 -7.90 -43.16 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -5.17 Total: 15.29 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -0.59 Total: 1.97 kcal Atomic # 7 Polarization: -67.25 SS G_CDS: 0.13 Total: -67.12 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.18 Total: -14.89 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -5.02 Total: 18.31 kcal Atomic # 16 Polarization: 0.35 SS G_CDS: -2.51 Total: -2.17 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.26 -7.90 -43.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753533765.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.394 kcal (2) G-P(sol) polarization free energy of solvation -35.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds