Wall clock time and date at job start Sat Apr 11 2020 05:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47409 * 2 1 4 4 C 1.50702 * 109.47203 * 119.99444 * 2 1 3 5 5 H 1.08000 * 119.99745 * 120.00125 * 4 2 1 6 6 C 1.37876 * 120.00383 * 300.00032 * 4 2 1 7 7 N 1.31520 * 119.99771 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00431 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46992 * 89.99757 * 8 6 4 10 10 H 1.48498 * 109.47453 * 210.00350 * 8 6 4 11 11 H 1.48503 * 109.47045 * 330.00365 * 8 6 4 12 12 N 1.46494 * 109.47143 * 239.99639 * 2 1 3 13 13 C 1.46497 * 120.00063 * 300.00098 * 12 2 1 14 14 S 1.65600 * 119.99942 * 119.99935 * 12 2 1 15 15 O 1.42098 * 106.40463 * 156.46071 * 14 12 2 16 16 O 1.42098 * 106.40339 * 23.54040 * 14 12 2 17 17 N 1.65599 * 107.21793 * 270.00038 * 14 12 2 18 18 C 1.47428 * 125.64814 * 89.97501 * 17 14 12 19 19 C 1.54915 * 104.83102 * 155.91301 * 18 17 14 20 20 C 1.55153 * 101.58175 * 37.00975 * 19 18 17 21 21 C 1.47486 * 125.59459 * 269.99884 * 17 14 12 22 22 H 1.09005 * 109.96368 * 300.32786 * 21 17 14 23 23 C 1.50697 * 110.03065 * 61.64216 * 21 17 14 24 24 C 1.38653 * 120.79024 * 38.78424 * 23 21 17 25 25 C 1.38204 * 119.16205 * 179.79345 * 24 23 21 26 26 N 1.31868 * 120.76400 * 0.49472 * 25 24 23 27 27 C 1.31867 * 121.72668 * 359.73509 * 26 25 24 28 28 C 1.38203 * 120.76657 * 0.02578 * 27 26 25 29 29 H 1.09006 * 109.47080 * 300.00295 * 1 2 3 30 30 H 1.08996 * 109.47093 * 60.00128 * 1 2 3 31 31 H 1.08998 * 109.46879 * 180.02562 * 1 2 3 32 32 H 0.97003 * 120.00183 * 180.02562 * 7 6 4 33 33 H 1.09006 * 109.47115 * 270.00079 * 13 12 2 34 34 H 1.08996 * 109.47099 * 29.99687 * 13 12 2 35 35 H 1.09006 * 109.47413 * 150.00003 * 13 12 2 36 36 H 1.09000 * 110.36462 * 37.07850 * 18 17 14 37 37 H 1.08998 * 110.36847 * 274.75058 * 18 17 14 38 38 H 1.09003 * 111.00447 * 278.93450 * 19 18 17 39 39 H 1.09000 * 111.03486 * 155.10368 * 19 18 17 40 40 H 1.09002 * 110.72030 * 82.86195 * 20 19 18 41 41 H 1.09003 * 110.72184 * 205.95846 * 20 19 18 42 42 H 1.07998 * 120.41742 * 0.02562 * 24 23 21 43 43 H 1.08002 * 119.61953 * 180.20556 * 25 24 23 44 44 H 1.08005 * 119.61984 * 180.02562 * 27 26 25 45 45 H 1.08000 * 120.42549 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 0.9428 0.8298 2.6034 8 14 2.3214 -1.1200 4.0080 9 1 3.6298 -0.5455 4.4124 10 1 1.3432 -0.9489 5.1121 11 1 2.4859 -2.5659 3.7121 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0932 -1.4278 14 16 2.9704 0.1141 -2.2862 15 8 3.7118 -0.8790 -2.9814 16 8 3.5794 1.1829 -1.5749 17 7 1.9606 0.8089 -3.3998 18 6 1.3729 2.1574 -3.3032 19 6 1.0632 2.5608 -4.7665 20 6 0.6033 1.2082 -5.3718 21 6 1.5008 0.1797 -4.6519 22 1 2.3566 -0.0690 -5.2796 23 6 0.7087 -1.0647 -4.3437 24 6 -0.1602 -1.1037 -3.2639 25 6 -0.8732 -2.2611 -3.0147 26 7 -0.7270 -3.3222 -3.7839 27 6 0.0935 -3.3227 -4.8162 28 6 0.8358 -2.1999 -5.1298 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.7087 1.1616 3.4844 33 1 2.4157 -2.7377 -0.9714 34 1 0.6904 -2.3002 -0.9845 35 1 1.6238 -2.2854 -2.5001 36 1 2.0875 2.8519 -2.8614 37 1 0.4556 2.1303 -2.7150 38 1 1.9582 2.9291 -5.2680 39 1 0.2629 3.2996 -4.8076 40 1 -0.4480 1.0243 -5.1505 41 1 0.7790 1.1874 -6.4473 42 1 -0.2811 -0.2394 -2.6278 43 1 -1.5545 -2.2986 -2.1776 44 1 0.1865 -4.2107 -5.4238 45 1 1.5064 -2.2064 -5.9763 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282965392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:44 Heat of formation + Delta-G solvation = -24.034123 kcal Electronic energy + Delta-G solvation = -30128.363403 eV Core-core repulsion = 26273.164290 eV Total energy + Delta-G solvation = -3855.199112 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.48494 -38.30456 -36.72857 -36.20953 -35.25985 -32.95880 -32.58214 -31.19350 -30.81842 -29.11921 -28.49130 -25.59630 -25.17195 -23.70632 -23.35201 -21.85060 -21.08402 -20.66062 -18.53589 -17.57403 -17.19396 -16.71434 -16.24304 -16.04619 -15.57873 -15.48068 -15.14703 -14.53954 -14.16182 -13.93369 -13.68637 -13.50519 -13.35558 -13.29183 -12.90003 -12.85359 -12.57966 -11.98950 -11.80580 -11.77417 -11.62180 -11.57829 -11.36172 -11.29813 -11.24054 -11.17475 -10.97452 -10.85252 -10.83068 -10.47084 -10.29193 -10.03640 -9.62615 -9.38833 -9.30480 -8.97602 -8.89119 -8.46444 -7.97955 -6.09167 -4.15178 1.03707 1.22384 1.28531 3.28675 3.35046 3.36690 3.40304 3.86928 4.06036 4.31044 4.39936 4.46860 4.53886 4.56723 4.85397 4.95424 5.01278 5.15141 5.20210 5.22736 5.31733 5.43254 5.56418 5.62610 5.67530 5.74226 5.74414 5.77189 5.90626 6.03945 6.07725 6.11472 6.13952 6.30625 6.46247 6.49372 6.60238 6.70598 6.76065 6.79661 6.96729 7.43456 7.60733 7.76456 8.01535 8.04396 8.25500 8.87102 9.50811 10.96439 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013351 B = 0.005278 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.685505 B = 5303.647622 C = 6157.634606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.269 3.731 3 H 0.058 0.942 4 C -0.518 4.518 5 H 0.061 0.939 6 C 0.064 3.936 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.985 5.985 13 C 0.110 3.890 14 S 2.786 3.214 15 O -0.989 6.989 16 O -0.969 6.969 17 N -1.017 6.017 18 C 0.115 3.885 19 C -0.127 4.127 20 C -0.117 4.117 21 C 0.193 3.807 22 H 0.089 0.911 23 C -0.073 4.073 24 C -0.144 4.144 25 C 0.101 3.899 26 N -0.483 5.483 27 C 0.091 3.909 28 C -0.156 4.156 29 H 0.094 0.906 30 H 0.010 0.990 31 H 0.034 0.966 32 H 0.263 0.737 33 H 0.044 0.956 34 H 0.072 0.928 35 H 0.048 0.952 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.144 0.856 43 H 0.156 0.844 44 H 0.153 0.847 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.744 0.248 -17.114 17.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.166 3.834 3 H 0.075 0.925 4 C -0.558 4.558 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.827 5.827 13 C -0.037 4.037 14 S 2.797 3.203 15 O -0.973 6.973 16 O -0.953 6.953 17 N -0.854 5.854 18 C -0.010 4.010 19 C -0.166 4.166 20 C -0.156 4.156 21 C 0.086 3.914 22 H 0.107 0.893 23 C -0.083 4.083 24 C -0.164 4.164 25 C -0.056 4.056 26 N -0.192 5.192 27 C -0.066 4.066 28 C -0.177 4.177 29 H 0.112 0.888 30 H 0.028 0.972 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.162 0.838 43 H 0.173 0.827 44 H 0.170 0.830 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.268 -0.358 -16.697 17.238 hybrid contribution 0.419 0.183 0.842 0.959 sum -3.849 -0.175 -15.855 16.317 Atomic orbital electron populations 1.22171 0.98331 0.99704 1.00411 1.18719 0.91229 0.92893 0.80538 0.92478 1.21320 1.31515 1.12955 0.90002 0.92038 1.24885 0.94936 0.95006 0.98949 1.69849 1.36565 1.22754 1.23772 0.86508 0.78664 0.80021 0.82302 1.20579 1.21167 1.19887 1.57729 1.70000 1.19616 1.35363 1.21383 1.01479 0.82056 0.98753 1.01785 0.73474 0.72970 0.72048 1.93531 1.68889 1.60155 1.74721 1.93596 1.73647 1.56183 1.71879 1.59673 1.66486 1.25151 1.34086 1.22035 0.98849 0.82854 0.97309 1.22773 1.01830 0.96749 0.95251 1.22664 0.99562 0.93645 0.99712 1.20228 0.95679 0.89699 0.85829 0.89270 1.20703 0.96488 0.95683 0.95401 1.22284 0.96004 1.00806 0.97310 1.22763 0.97229 0.88206 0.97362 1.67676 1.17763 1.29014 1.04711 1.22677 0.92279 0.97456 0.94144 1.21959 1.01005 0.93592 1.01116 0.88801 0.97157 0.94656 0.92720 0.93731 0.90935 0.93337 0.89723 0.91303 0.90574 0.89878 0.90364 0.90078 0.83844 0.82668 0.82973 0.84888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 8.64 37.16 0.32 -2.79 16 2 C 0.27 6.38 2.62 -69.08 -0.18 6.19 16 3 H 0.06 1.51 6.91 -51.93 -0.36 1.15 16 4 C -0.52 -13.84 8.37 -34.44 -0.29 -14.13 16 5 H 0.06 1.66 7.65 -52.49 -0.40 1.26 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.31 11.32 55.43 0.63 -23.68 16 8 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.98 -20.35 2.63 -115.85 -0.31 -20.66 16 13 C 0.11 2.07 7.13 59.85 0.43 2.50 16 14 S 2.79 55.91 6.02 -107.50 -0.65 55.26 16 15 O -0.99 -21.10 16.79 -57.17 -0.96 -22.06 16 16 O -0.97 -22.81 16.03 -57.17 -0.92 -23.72 16 17 N -1.02 -15.23 2.80 -105.30 -0.29 -15.52 16 18 C 0.11 1.45 7.11 -2.52 -0.02 1.44 16 19 C -0.13 -1.13 7.09 -24.58 -0.17 -1.31 16 20 C -0.12 -1.03 6.45 -24.90 -0.16 -1.19 16 21 C 0.19 2.33 3.09 -67.85 -0.21 2.12 16 22 H 0.09 1.05 8.06 -51.93 -0.42 0.63 16 23 C -0.07 -0.93 3.47 -104.32 -0.36 -1.29 16 24 C -0.14 -1.94 6.11 -39.44 -0.24 -2.18 16 25 C 0.10 1.36 9.21 -17.55 -0.16 1.20 16 26 N -0.48 -6.59 10.36 -13.25 -0.14 -6.73 16 27 C 0.09 1.07 11.18 -17.55 -0.20 0.88 16 28 C -0.16 -1.79 9.59 -39.44 -0.38 -2.17 16 29 H 0.09 2.25 6.07 -51.93 -0.32 1.93 16 30 H 0.01 0.17 6.42 -51.93 -0.33 -0.16 16 31 H 0.03 0.71 6.66 -51.93 -0.35 0.36 16 32 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 33 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.07 1.32 5.47 -51.93 -0.28 1.03 16 35 H 0.05 0.84 4.67 -51.93 -0.24 0.60 16 36 H 0.08 1.14 7.78 -51.93 -0.40 0.74 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.68 7.81 -51.93 -0.41 0.28 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.14 2.02 5.67 -52.49 -0.30 1.72 16 43 H 0.16 1.91 8.06 -52.49 -0.42 1.49 16 44 H 0.15 1.36 8.06 -52.48 -0.42 0.93 16 45 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 358.54 15.07 5.40 5.40 Total: -1.00 -32.19 358.54 -10.29 -42.48 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -6.32 Total: 2.20 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -1.72 Total: -9.10 kcal Atomic # 7 Polarization: -66.49 SS G_CDS: -0.11 Total: -66.60 kcal Atomic # 8 Polarization: -43.91 SS G_CDS: -1.88 Total: -45.78 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 55.91 SS G_CDS: -0.65 Total: 55.26 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.19 -10.29 -42.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282965392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.450 kcal (2) G-P(sol) polarization free energy of solvation -32.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds