Wall clock time and date at job start Sat Apr 11 2020 05:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47308 * 2 1 4 4 C 1.50705 * 109.46968 * 119.99359 * 2 1 3 5 5 H 1.08001 * 119.99618 * 120.00197 * 4 2 1 6 6 C 1.37877 * 119.99855 * 300.00762 * 4 2 1 7 7 N 1.31519 * 119.99637 * 179.97438 * 6 4 2 8 8 Si 1.86796 * 120.00342 * 359.97438 * 6 4 2 9 9 H 1.48504 * 109.47114 * 90.00279 * 8 6 4 10 10 H 1.48504 * 109.47346 * 210.00411 * 8 6 4 11 11 H 1.48500 * 109.47096 * 330.00454 * 8 6 4 12 12 N 1.46498 * 109.47521 * 240.00026 * 2 1 3 13 13 C 1.46505 * 119.99499 * 295.18288 * 12 2 1 14 14 S 1.65590 * 120.00345 * 115.18759 * 12 2 1 15 15 O 1.42100 * 106.40163 * 161.74303 * 14 12 2 16 16 O 1.42104 * 106.40550 * 28.82197 * 14 12 2 17 17 N 1.65593 * 107.21801 * 275.28195 * 14 12 2 18 18 C 1.47753 * 125.82247 * 94.68975 * 17 14 12 19 19 C 1.54911 * 104.84192 * 204.24726 * 18 17 14 20 20 C 1.55156 * 101.58160 * 322.91008 * 19 18 17 21 21 C 1.47024 * 125.65213 * 274.68752 * 17 14 12 22 22 H 1.09001 * 109.87811 * 59.32335 * 21 17 14 23 23 C 1.50703 * 109.88204 * 298.31765 * 21 17 14 24 24 C 1.38653 * 120.78968 * 136.45050 * 23 21 17 25 25 C 1.38202 * 119.15686 * 179.97438 * 24 23 21 26 26 N 1.31869 * 120.76994 * 359.97438 * 25 24 23 27 27 C 1.31869 * 121.72423 * 0.02562 * 26 25 24 28 28 C 1.38204 * 120.76421 * 0.02562 * 27 26 25 29 29 H 1.08993 * 109.47329 * 185.99262 * 1 2 3 30 30 H 1.08994 * 109.47541 * 306.00303 * 1 2 3 31 31 H 1.09005 * 109.46977 * 65.99895 * 1 2 3 32 32 H 0.96995 * 120.00010 * 179.97438 * 7 6 4 33 33 H 1.08995 * 109.47258 * 270.00045 * 13 12 2 34 34 H 1.09003 * 109.47210 * 30.00361 * 13 12 2 35 35 H 1.08996 * 109.47065 * 150.00018 * 13 12 2 36 36 H 1.08999 * 110.43592 * 85.37190 * 18 17 14 37 37 H 1.08998 * 110.37962 * 323.10104 * 18 17 14 38 38 H 1.08992 * 111.00652 * 204.83005 * 19 18 17 39 39 H 1.09003 * 111.00202 * 80.98091 * 19 18 17 40 40 H 1.09004 * 110.71628 * 277.13301 * 20 19 18 41 41 H 1.08999 * 110.87072 * 153.93834 * 20 19 18 42 42 H 1.07996 * 120.41574 * 0.25020 * 24 23 21 43 43 H 1.08002 * 119.61096 * 179.97438 * 25 24 23 44 44 H 1.08000 * 119.62039 * 179.97438 * 27 26 25 45 45 H 1.08003 * 120.42146 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6990 -0.2392 2.4828 7 7 2.1370 -0.8594 3.5567 8 14 0.6256 1.2799 2.6540 9 1 -0.8024 0.8745 2.6992 10 1 0.9768 1.9956 3.9069 11 1 0.8488 2.1773 1.4921 12 7 2.0184 -0.6906 -1.1961 13 6 1.7536 -2.1202 -1.3759 14 16 2.8698 0.1446 -2.3448 15 8 3.5545 -0.8277 -3.1227 16 8 3.5317 1.2019 -1.6640 17 7 1.7653 0.8564 -3.3525 18 6 1.2506 2.2364 -3.2346 19 6 -0.1245 2.2092 -3.9475 20 6 0.1570 1.2458 -5.1307 21 6 1.1319 0.2194 -4.5164 22 1 0.5847 -0.6688 -4.2007 23 6 2.1825 -0.1590 -5.5285 24 6 2.1446 -1.3906 -6.1642 25 6 3.1250 -1.7025 -7.0870 26 7 4.0871 -0.8447 -7.3651 27 6 4.1546 0.3352 -6.7801 28 6 3.2100 0.7162 -5.8460 29 1 -0.3633 -1.0220 0.1073 30 1 -0.3634 0.6040 0.8313 31 1 -0.3633 0.4180 -0.9389 32 1 1.9029 -0.5278 4.4376 33 1 2.5646 -2.6985 -0.9333 34 1 0.8140 -2.3799 -0.8881 35 1 1.6850 -2.3460 -2.4400 36 1 1.9217 2.9367 -3.7318 37 1 1.1290 2.5079 -2.1860 38 1 -0.3976 3.2010 -4.3076 39 1 -0.8967 1.8071 -3.2915 40 1 0.6276 1.7779 -5.9575 41 1 -0.7600 0.7574 -5.4604 42 1 1.3564 -2.0954 -5.9442 43 1 3.1027 -2.6600 -7.5862 44 1 4.9578 1.0114 -7.0332 45 1 3.2703 1.6841 -5.3705 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282965394.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:49 Heat of formation + Delta-G solvation = -20.070068 kcal Electronic energy + Delta-G solvation = -29403.709072 eV Core-core repulsion = 25548.681854 eV Total energy + Delta-G solvation = -3855.027218 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.43213 -38.40619 -36.85773 -36.44635 -35.36839 -32.98826 -32.53688 -31.24348 -30.96592 -30.11655 -28.57824 -25.77039 -25.12755 -23.82322 -23.45315 -21.97614 -21.19379 -20.84202 -18.69902 -17.63258 -17.42689 -16.93111 -16.29688 -16.12438 -15.82461 -15.61196 -15.27092 -14.70784 -14.18162 -13.89381 -13.79606 -13.69175 -13.44565 -13.37575 -13.31378 -12.84110 -12.73617 -12.35052 -12.18829 -11.98537 -11.90234 -11.66120 -11.61986 -11.53159 -11.47162 -11.33090 -11.27326 -11.10943 -10.95168 -10.54011 -10.23786 -9.74050 -9.64376 -9.47889 -9.43068 -9.14505 -9.04915 -8.68562 -8.18050 -6.16942 -4.17801 0.90076 1.14978 1.24509 3.17466 3.25673 3.28746 3.31843 3.76353 3.92676 4.19980 4.29891 4.36109 4.44084 4.51103 4.73060 4.85238 4.88691 5.03369 5.11866 5.12846 5.18978 5.32330 5.39869 5.53510 5.56341 5.61232 5.63826 5.66094 5.76739 5.92630 5.98062 5.99142 5.99677 6.08292 6.19660 6.23743 6.33935 6.38815 6.43187 6.55027 6.68762 6.75494 7.22620 7.33075 7.58482 7.96072 8.42567 8.87161 9.42470 10.96086 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018986 B = 0.004261 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.397102 B = 6570.208031 C = 7140.428586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.240 3.760 3 H 0.053 0.947 4 C -0.522 4.522 5 H 0.082 0.918 6 C 0.075 3.925 7 N -0.893 5.893 8 Si 0.882 3.118 9 H -0.277 1.277 10 H -0.293 1.293 11 H -0.265 1.265 12 N -0.983 5.983 13 C 0.111 3.889 14 S 2.786 3.214 15 O -0.975 6.975 16 O -0.969 6.969 17 N -1.016 6.016 18 C 0.119 3.881 19 C -0.129 4.129 20 C -0.116 4.116 21 C 0.191 3.809 22 H 0.086 0.914 23 C -0.043 4.043 24 C -0.155 4.155 25 C 0.099 3.901 26 N -0.488 5.488 27 C 0.099 3.901 28 C -0.157 4.157 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.033 0.967 32 H 0.266 0.734 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.050 0.950 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.133 0.867 43 H 0.154 0.846 44 H 0.153 0.847 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.108 3.874 -19.989 21.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.135 3.865 3 H 0.070 0.930 4 C -0.561 4.561 5 H 0.100 0.900 6 C -0.128 4.128 7 N -0.531 5.531 8 Si 0.711 3.289 9 H -0.203 1.203 10 H -0.220 1.220 11 H -0.190 1.190 12 N -0.824 5.824 13 C -0.035 4.035 14 S 2.797 3.203 15 O -0.959 6.959 16 O -0.953 6.953 17 N -0.853 5.853 18 C -0.006 4.006 19 C -0.168 4.168 20 C -0.155 4.155 21 C 0.084 3.916 22 H 0.104 0.896 23 C -0.053 4.053 24 C -0.176 4.176 25 C -0.057 4.057 26 N -0.197 5.197 27 C -0.058 4.058 28 C -0.177 4.177 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.101 0.899 42 H 0.151 0.849 43 H 0.171 0.829 44 H 0.170 0.830 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.429 3.664 -20.391 21.417 hybrid contribution -1.587 0.875 1.160 2.152 sum -7.017 4.539 -19.231 20.968 Atomic orbital electron populations 1.22512 0.99177 1.01669 0.98813 1.19065 0.90262 0.93430 0.83699 0.92959 1.21122 1.32592 1.14327 0.88098 0.89963 1.24899 0.95722 0.96546 0.95681 1.69871 1.45105 1.40112 0.97970 0.86956 0.80554 0.83855 0.77489 1.20338 1.21993 1.19041 1.57536 1.73839 1.17681 1.33381 1.21171 1.02456 0.80667 0.99194 1.01864 0.73238 0.73033 0.72179 1.93585 1.70599 1.61074 1.70624 1.93603 1.71195 1.57020 1.73513 1.59651 1.62596 1.22644 1.40431 1.22041 0.94438 0.82451 1.01671 1.22803 0.97111 0.99994 0.96886 1.22667 0.98473 0.96260 0.98128 1.20158 0.90847 0.96804 0.83830 0.89589 1.20555 0.95596 0.93829 0.95275 1.21916 1.00827 0.96535 0.98277 1.22663 0.89866 0.98313 0.94906 1.67626 1.23204 1.03230 1.25652 1.22666 0.97198 0.93162 0.92754 1.21905 0.95709 1.00877 0.99188 0.92107 0.93408 0.94773 0.92396 0.92808 0.90892 0.93095 0.91437 0.90169 0.89882 0.90201 0.90399 0.89856 0.84886 0.82907 0.83000 0.85307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.18 8.55 37.16 0.32 -2.87 16 2 C 0.24 5.46 2.22 -69.08 -0.15 5.30 16 3 H 0.05 1.27 6.04 -51.93 -0.31 0.95 16 4 C -0.52 -14.24 8.89 -34.44 -0.31 -14.55 16 5 H 0.08 2.44 7.62 -52.49 -0.40 2.04 16 6 C 0.07 2.09 5.45 -17.82 -0.10 1.99 16 7 N -0.89 -26.65 13.96 55.43 0.77 -25.88 16 8 Si 0.88 21.00 24.31 -169.99 -4.13 16.86 16 9 H -0.28 -6.25 6.92 56.52 0.39 -5.86 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.27 -6.01 6.53 56.52 0.37 -5.64 16 12 N -0.98 -19.53 3.12 -115.85 -0.36 -19.89 16 13 C 0.11 1.93 9.35 59.85 0.56 2.49 16 14 S 2.79 52.78 6.28 -107.50 -0.68 52.11 16 15 O -0.97 -19.49 15.21 -57.17 -0.87 -20.36 16 16 O -0.97 -21.82 16.37 -57.17 -0.94 -22.76 16 17 N -1.02 -14.10 2.96 -105.39 -0.31 -14.41 16 18 C 0.12 1.38 6.97 -2.35 -0.02 1.36 16 19 C -0.13 -1.06 7.09 -24.58 -0.17 -1.24 16 20 C -0.12 -0.92 6.44 -24.90 -0.16 -1.08 16 21 C 0.19 2.11 3.32 -68.11 -0.23 1.88 16 22 H 0.09 0.88 8.03 -51.93 -0.42 0.46 16 23 C -0.04 -0.52 3.37 -104.32 -0.35 -0.87 16 24 C -0.16 -1.76 9.78 -39.44 -0.39 -2.14 16 25 C 0.10 1.17 11.18 -17.55 -0.20 0.98 16 26 N -0.49 -6.62 10.36 -13.25 -0.14 -6.76 16 27 C 0.10 1.25 11.18 -17.55 -0.20 1.05 16 28 C -0.16 -1.97 9.09 -39.44 -0.36 -2.33 16 29 H 0.06 1.15 7.08 -51.93 -0.37 0.78 16 30 H 0.05 0.98 3.45 -51.93 -0.18 0.80 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.05 0.99 8.02 -51.93 -0.42 0.58 16 34 H 0.07 1.20 6.81 -51.93 -0.35 0.85 16 35 H 0.05 0.73 7.65 -51.93 -0.40 0.34 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.59 7.69 -51.93 -0.40 0.19 16 41 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 43 H 0.15 1.35 8.06 -52.49 -0.42 0.92 16 44 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 45 H 0.13 1.48 7.92 -52.48 -0.42 1.06 16 LS Contribution 367.67 15.07 5.54 5.54 Total: -1.00 -34.87 367.67 -9.50 -44.37 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -6.64 Total: 1.18 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -1.75 Total: -10.01 kcal Atomic # 7 Polarization: -66.90 SS G_CDS: -0.04 Total: -66.93 kcal Atomic # 8 Polarization: -41.31 SS G_CDS: -1.81 Total: -43.12 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.13 Total: 16.86 kcal Atomic # 16 Polarization: 52.78 SS G_CDS: -0.68 Total: 52.11 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.87 -9.50 -44.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282965394.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.296 kcal (2) G-P(sol) polarization free energy of solvation -34.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds