Wall clock time and date at job start Sat Apr 11 2020 05:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1 6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46809 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46948 * 120.00386 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00673 * 8 6 4 12 12 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 13 13 C 1.46499 * 120.00401 * 59.99673 * 12 2 1 14 14 S 1.65600 * 119.99854 * 239.99896 * 12 2 1 15 15 O 1.42101 * 106.40246 * 203.53898 * 14 12 2 16 16 O 1.42103 * 106.40034 * 336.45770 * 14 12 2 17 17 N 1.65601 * 107.21882 * 89.99628 * 14 12 2 18 18 C 1.47425 * 125.64748 * 90.02493 * 17 14 12 19 19 C 1.54911 * 104.83241 * 204.09280 * 18 17 14 20 20 C 1.55155 * 101.58198 * 322.98742 * 19 18 17 21 21 C 1.47023 * 125.65066 * 269.71834 * 17 14 12 22 22 H 1.09000 * 109.87960 * 59.55927 * 21 17 14 23 23 C 1.50701 * 109.87927 * 298.39344 * 21 17 14 24 24 C 1.38648 * 120.79144 * 319.71850 * 23 21 17 25 25 C 1.38205 * 119.15922 * 179.75823 * 24 23 21 26 26 N 1.31875 * 120.76529 * 0.53044 * 25 24 23 27 27 C 1.31862 * 121.72491 * 359.74215 * 26 25 24 28 28 C 1.38205 * 120.76468 * 359.97438 * 27 26 25 29 29 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 33 33 H 1.08993 * 109.47066 * 89.99858 * 13 12 2 34 34 H 1.09004 * 109.47229 * 210.00249 * 13 12 2 35 35 H 1.09000 * 109.47083 * 330.00074 * 13 12 2 36 36 H 1.09003 * 110.36818 * 322.93060 * 18 17 14 37 37 H 1.09007 * 110.36385 * 85.14453 * 18 17 14 38 38 H 1.09000 * 111.00438 * 81.06818 * 19 18 17 39 39 H 1.09001 * 110.99919 * 204.91529 * 19 18 17 40 40 H 1.08996 * 110.71817 * 153.86355 * 20 19 18 41 41 H 1.08999 * 110.72389 * 276.96544 * 20 19 18 42 42 H 1.07995 * 120.41868 * 359.97438 * 24 23 21 43 43 H 1.08001 * 119.61633 * 180.29886 * 25 24 23 44 44 H 1.07998 * 119.61833 * 180.02562 * 27 26 25 45 45 H 1.08006 * 120.41722 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 3.1473 -2.2863 -3.6039 10 1 1.1675 -1.5866 -4.8165 11 1 3.1471 -0.1858 -4.8162 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4280 14 16 2.9705 0.1141 2.2862 15 8 3.7120 -0.8790 2.9814 16 8 3.5795 1.1829 1.5747 17 7 1.9609 0.8090 3.3997 18 6 1.5008 0.1815 4.6520 19 6 0.1739 0.9042 4.9935 20 6 0.4875 2.3574 4.5496 21 6 1.3798 2.1563 3.3065 22 1 0.7766 2.2380 2.4023 23 6 2.4782 3.1879 3.2884 24 6 3.5902 3.0551 4.1057 25 6 4.5798 4.0186 4.0581 26 7 4.4699 5.0595 3.2558 27 6 3.4242 5.2211 2.4690 28 6 2.3979 4.2955 2.4582 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 0.7093 1.1618 -3.4844 33 1 2.4157 -2.7377 0.9716 34 1 1.6239 -2.2853 2.5002 35 1 0.6905 -2.3003 0.9847 36 1 1.3246 -0.8835 4.5002 37 1 2.2333 0.3349 5.4445 38 1 -0.6553 0.4905 4.4196 39 1 -0.0319 0.8581 6.0630 40 1 -0.4287 2.8868 4.2879 41 1 1.0299 2.8907 5.3303 42 1 3.6836 2.2076 4.7685 43 1 5.4516 3.9200 4.6881 44 1 3.3694 6.0864 1.8251 45 1 1.5441 4.4333 1.8112 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282965396.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:55 Heat of formation + Delta-G solvation = -29.006075 kcal Electronic energy + Delta-G solvation = -29477.021243 eV Core-core repulsion = 25621.606530 eV Total energy + Delta-G solvation = -3855.414712 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -40.25946 -38.28918 -36.71925 -36.19519 -35.23603 -32.83647 -32.60507 -31.09938 -30.81793 -29.14469 -28.45825 -25.63763 -25.17526 -23.66885 -23.26708 -21.83909 -21.13151 -20.63899 -18.57678 -17.52171 -17.22902 -16.60762 -16.33032 -15.89140 -15.56660 -15.43306 -15.15038 -14.51183 -14.04176 -13.76731 -13.57564 -13.51469 -13.37891 -13.25542 -13.13382 -12.83543 -12.62521 -12.04833 -11.77379 -11.75455 -11.53790 -11.48025 -11.41259 -11.37680 -11.26163 -11.18836 -11.00981 -10.85266 -10.83464 -10.48620 -10.31194 -10.05536 -9.55353 -9.29847 -9.28652 -8.96007 -8.90451 -8.48519 -8.00979 -6.10646 -4.16732 1.05079 1.33204 1.42754 3.25829 3.34229 3.37846 3.42527 3.92789 4.07628 4.31692 4.38484 4.50863 4.59813 4.65304 4.90021 4.96102 5.01150 5.20043 5.21648 5.33066 5.35015 5.40825 5.48156 5.62954 5.65876 5.72107 5.77487 5.78885 5.93260 6.02791 6.08480 6.09410 6.15272 6.32524 6.42185 6.55808 6.59274 6.72817 6.76316 6.87268 6.96874 7.41835 7.59779 7.75145 8.00049 8.13504 8.24132 8.85609 9.49269 10.95144 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012469 B = 0.004886 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.027890 B = 5729.721331 C = 6602.083299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.268 3.732 3 H 0.058 0.942 4 C -0.519 4.519 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.989 5.989 13 C 0.110 3.890 14 S 2.784 3.216 15 O -0.992 6.992 16 O -0.959 6.959 17 N -1.016 6.016 18 C 0.122 3.878 19 C -0.128 4.128 20 C -0.117 4.117 21 C 0.191 3.809 22 H 0.092 0.908 23 C -0.040 4.040 24 C -0.162 4.162 25 C 0.096 3.904 26 N -0.489 5.489 27 C 0.100 3.900 28 C -0.150 4.150 29 H 0.009 0.991 30 H 0.093 0.907 31 H 0.033 0.967 32 H 0.263 0.737 33 H 0.049 0.951 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.127 0.873 43 H 0.151 0.849 44 H 0.155 0.845 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.103 3.253 15.805 16.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.166 3.834 3 H 0.076 0.924 4 C -0.558 4.558 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.832 5.832 13 C -0.037 4.037 14 S 2.795 3.205 15 O -0.976 6.976 16 O -0.943 6.943 17 N -0.853 5.853 18 C -0.004 4.004 19 C -0.167 4.167 20 C -0.156 4.156 21 C 0.084 3.916 22 H 0.110 0.890 23 C -0.050 4.050 24 C -0.182 4.182 25 C -0.060 4.060 26 N -0.198 5.198 27 C -0.056 4.056 28 C -0.171 4.171 29 H 0.028 0.972 30 H 0.111 0.889 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.145 0.855 43 H 0.169 0.831 44 H 0.172 0.828 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.491 3.980 15.585 16.277 hybrid contribution -0.742 -1.264 -1.049 1.802 sum -3.233 2.716 14.536 15.136 Atomic orbital electron populations 1.22120 0.98308 0.99744 1.00500 1.18732 0.91231 0.92965 0.80521 0.92427 1.21360 1.31500 1.12971 0.90016 0.91981 1.24895 0.94938 0.95003 0.98986 1.69855 1.36657 1.22704 1.23685 0.86453 0.78641 0.79713 0.82699 1.19730 1.20944 1.20856 1.57805 1.70144 1.19705 1.35506 1.21145 1.01760 0.82162 0.98604 1.01909 0.73479 0.73037 0.72075 1.93537 1.68744 1.60381 1.74930 1.93630 1.73349 1.55566 1.71706 1.59575 1.67480 1.23536 1.34668 1.21934 0.95347 0.97204 0.85898 1.22792 0.97435 0.94863 1.01638 1.22663 0.99236 0.97528 0.96129 1.20176 0.91258 0.79844 1.00352 0.89030 1.20527 0.95493 0.94918 0.94071 1.21871 0.95115 1.00593 1.00642 1.22623 0.97678 0.89838 0.95872 1.67615 1.23958 1.22505 1.05759 1.22674 0.89031 0.98355 0.95569 1.21974 1.00975 0.95040 0.99067 0.97155 0.88856 0.94769 0.92754 0.93261 0.93519 0.90915 0.90791 0.91671 0.90240 0.90061 0.89787 0.90507 0.85519 0.83138 0.82821 0.84573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 8.95 37.16 0.33 -2.89 16 2 C 0.27 6.46 2.62 -69.08 -0.18 6.28 16 3 H 0.06 1.54 6.91 -51.93 -0.36 1.18 16 4 C -0.52 -13.93 8.37 -34.44 -0.29 -14.22 16 5 H 0.06 1.68 7.65 -52.48 -0.40 1.28 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.42 11.32 55.43 0.63 -23.79 16 8 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 9 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 N -0.99 -20.55 3.12 -115.85 -0.36 -20.92 16 13 C 0.11 1.96 9.53 59.85 0.57 2.53 16 14 S 2.78 55.53 6.26 -107.50 -0.67 54.86 16 15 O -0.99 -20.97 16.80 -57.17 -0.96 -21.93 16 16 O -0.96 -22.41 14.87 -57.17 -0.85 -23.26 16 17 N -1.02 -15.16 2.83 -105.62 -0.30 -15.46 16 18 C 0.12 1.37 6.98 -2.53 -0.02 1.35 16 19 C -0.13 -1.10 7.09 -24.58 -0.17 -1.27 16 20 C -0.12 -1.09 6.47 -24.89 -0.16 -1.25 16 21 C 0.19 2.56 3.29 -68.10 -0.22 2.34 16 22 H 0.09 1.30 8.06 -51.93 -0.42 0.88 16 23 C -0.04 -0.59 3.41 -104.32 -0.36 -0.95 16 24 C -0.16 -2.34 9.20 -39.44 -0.36 -2.70 16 25 C 0.10 1.39 11.18 -17.55 -0.20 1.20 16 26 N -0.49 -7.65 10.36 -13.25 -0.14 -7.79 16 27 C 0.10 1.45 11.18 -17.55 -0.20 1.26 16 28 C -0.15 -2.17 9.79 -39.44 -0.39 -2.56 16 29 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.09 2.28 6.07 -51.93 -0.32 1.96 16 31 H 0.03 0.71 6.66 -51.93 -0.35 0.36 16 32 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.05 0.70 7.79 -51.93 -0.40 0.29 16 35 H 0.07 1.24 6.43 -51.93 -0.33 0.91 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.67 7.78 -51.93 -0.40 0.27 16 42 H 0.13 1.64 7.82 -52.49 -0.41 1.23 16 43 H 0.15 1.73 8.06 -52.49 -0.42 1.30 16 44 H 0.15 1.78 8.06 -52.49 -0.42 1.35 16 45 H 0.14 1.71 8.06 -52.48 -0.42 1.29 16 LS Contribution 374.42 15.07 5.64 5.64 Total: -1.00 -33.41 374.42 -10.52 -43.93 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -6.76 Total: 1.90 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: -1.73 Total: -9.27 kcal Atomic # 7 Polarization: -67.78 SS G_CDS: -0.17 Total: -67.95 kcal Atomic # 8 Polarization: -43.38 SS G_CDS: -1.81 Total: -45.19 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 55.53 SS G_CDS: -0.67 Total: 54.86 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.41 -10.52 -43.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282965396.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.926 kcal (2) G-P(sol) polarization free energy of solvation -33.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds