Wall clock time and date at job start Sat Apr 11 2020 05:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1 6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46809 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46948 * 120.00386 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00673 * 8 6 4 12 12 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 13 13 C 1.46499 * 120.00401 * 59.99673 * 12 2 1 14 14 S 1.65600 * 119.99854 * 239.99896 * 12 2 1 15 15 O 1.42101 * 106.40246 * 203.53898 * 14 12 2 16 16 O 1.42103 * 106.40034 * 336.45770 * 14 12 2 17 17 N 1.65601 * 107.21882 * 89.99628 * 14 12 2 18 18 C 1.47425 * 125.64748 * 90.02493 * 17 14 12 19 19 C 1.54911 * 104.83241 * 204.09280 * 18 17 14 20 20 C 1.55155 * 101.58198 * 322.98742 * 19 18 17 21 21 C 1.47023 * 125.65066 * 269.71834 * 17 14 12 22 22 H 1.09000 * 109.87960 * 59.55927 * 21 17 14 23 23 C 1.50701 * 109.87927 * 298.39344 * 21 17 14 24 24 C 1.38648 * 120.79144 * 319.71850 * 23 21 17 25 25 C 1.38205 * 119.15922 * 179.75823 * 24 23 21 26 26 N 1.31875 * 120.76529 * 0.53044 * 25 24 23 27 27 C 1.31862 * 121.72491 * 359.74215 * 26 25 24 28 28 C 1.38205 * 120.76468 * 359.97438 * 27 26 25 29 29 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 33 33 H 1.08993 * 109.47066 * 89.99858 * 13 12 2 34 34 H 1.09004 * 109.47229 * 210.00249 * 13 12 2 35 35 H 1.09000 * 109.47083 * 330.00074 * 13 12 2 36 36 H 1.09003 * 110.36818 * 322.93060 * 18 17 14 37 37 H 1.09007 * 110.36385 * 85.14453 * 18 17 14 38 38 H 1.09000 * 111.00438 * 81.06818 * 19 18 17 39 39 H 1.09001 * 110.99919 * 204.91529 * 19 18 17 40 40 H 1.08996 * 110.71817 * 153.86355 * 20 19 18 41 41 H 1.08999 * 110.72389 * 276.96544 * 20 19 18 42 42 H 1.07995 * 120.41868 * 359.97438 * 24 23 21 43 43 H 1.08001 * 119.61633 * 180.29886 * 25 24 23 44 44 H 1.07998 * 119.61833 * 180.02562 * 27 26 25 45 45 H 1.08006 * 120.41722 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 3.1473 -2.2863 -3.6039 10 1 1.1675 -1.5866 -4.8165 11 1 3.1471 -0.1858 -4.8162 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4280 14 16 2.9705 0.1141 2.2862 15 8 3.7120 -0.8790 2.9814 16 8 3.5795 1.1829 1.5747 17 7 1.9609 0.8090 3.3997 18 6 1.5008 0.1815 4.6520 19 6 0.1739 0.9042 4.9935 20 6 0.4875 2.3574 4.5496 21 6 1.3798 2.1563 3.3065 22 1 0.7766 2.2380 2.4023 23 6 2.4782 3.1879 3.2884 24 6 3.5902 3.0551 4.1057 25 6 4.5798 4.0186 4.0581 26 7 4.4699 5.0595 3.2558 27 6 3.4242 5.2211 2.4690 28 6 2.3979 4.2955 2.4582 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 0.7093 1.1618 -3.4844 33 1 2.4157 -2.7377 0.9716 34 1 1.6239 -2.2853 2.5002 35 1 0.6905 -2.3003 0.9847 36 1 1.3246 -0.8835 4.5002 37 1 2.2333 0.3349 5.4445 38 1 -0.6553 0.4905 4.4196 39 1 -0.0319 0.8581 6.0630 40 1 -0.4287 2.8868 4.2879 41 1 1.0299 2.8907 5.3303 42 1 3.6836 2.2076 4.7685 43 1 5.4516 3.9200 4.6881 44 1 3.3694 6.0864 1.8251 45 1 1.5441 4.4333 1.8112 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282965396.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:53 Heat of formation + Delta-G solvation = -51.291209 kcal Electronic energy + Delta-G solvation = -29477.987599 eV Core-core repulsion = 25621.606530 eV Total energy + Delta-G solvation = -3856.381068 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.32605 -39.28517 -38.37768 -37.92029 -36.90689 -34.55871 -33.88549 -32.15372 -31.82238 -30.94182 -29.42456 -27.31530 -27.03996 -24.70436 -24.36913 -22.92209 -22.41974 -21.97245 -19.92708 -18.99555 -18.70186 -18.25565 -17.75486 -17.21981 -16.93154 -16.58795 -16.49812 -16.07616 -15.32442 -15.10080 -14.93778 -14.71008 -14.62116 -14.52802 -14.36913 -14.15841 -13.77445 -13.59914 -13.37047 -13.24163 -13.19441 -13.03313 -12.83124 -12.75717 -12.62040 -12.57441 -12.39363 -12.25484 -12.17840 -12.05371 -11.91645 -11.57795 -11.17189 -10.68011 -10.53299 -10.39708 -10.07317 -10.03254 -9.69514 -8.14616 -6.27549 -0.45549 0.22780 0.30334 1.38112 1.41555 1.51475 2.00615 2.40063 2.53948 2.87680 3.13731 3.18646 3.49800 3.60270 3.67211 3.80470 3.95954 4.02073 4.16121 4.21395 4.26796 4.39427 4.57823 4.64278 4.69048 4.72603 4.76612 4.83449 4.92327 4.94261 4.98082 4.99227 5.04299 5.06902 5.13113 5.13633 5.15362 5.31828 5.44514 5.49362 5.59483 5.76081 5.79947 5.85898 6.12155 6.28447 6.79352 7.02449 7.41306 8.89507 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012469 B = 0.004886 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.027890 B = 5729.721331 C = 6602.083299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.276 3.724 3 H 0.024 0.976 4 C -0.540 4.540 5 H 0.051 0.949 6 C 0.021 3.979 7 N -0.910 5.910 8 Si 0.951 3.049 9 H -0.273 1.273 10 H -0.271 1.271 11 H -0.284 1.284 12 N -0.998 5.998 13 C 0.103 3.897 14 S 2.798 3.202 15 O -1.008 7.008 16 O -1.002 7.002 17 N -1.010 6.010 18 C 0.107 3.893 19 C -0.115 4.115 20 C -0.107 4.107 21 C 0.184 3.816 22 H 0.079 0.921 23 C -0.051 4.051 24 C -0.173 4.173 25 C 0.085 3.915 26 N -0.512 5.512 27 C 0.089 3.911 28 C -0.166 4.166 29 H 0.037 0.963 30 H 0.067 0.933 31 H 0.042 0.958 32 H 0.265 0.735 33 H 0.037 0.963 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.113 0.887 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.139 0.861 43 H 0.175 0.825 44 H 0.176 0.824 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.441 2.681 17.478 18.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.172 3.828 3 H 0.041 0.959 4 C -0.579 4.579 5 H 0.069 0.931 6 C -0.179 4.179 7 N -0.549 5.549 8 Si 0.777 3.223 9 H -0.197 1.197 10 H -0.197 1.197 11 H -0.210 1.210 12 N -0.840 5.840 13 C -0.042 4.042 14 S 2.809 3.191 15 O -0.992 6.992 16 O -0.986 6.986 17 N -0.850 5.850 18 C -0.017 4.017 19 C -0.154 4.154 20 C -0.146 4.146 21 C 0.078 3.922 22 H 0.097 0.903 23 C -0.061 4.061 24 C -0.193 4.193 25 C -0.071 4.071 26 N -0.221 5.221 27 C -0.067 4.067 28 C -0.187 4.187 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.131 0.869 40 H 0.121 0.879 41 H 0.104 0.896 42 H 0.157 0.843 43 H 0.192 0.808 44 H 0.193 0.807 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.831 3.381 17.263 18.003 hybrid contribution -0.301 -1.067 -1.498 1.864 sum -4.133 2.313 15.765 16.461 Atomic orbital electron populations 1.21891 0.96558 1.00219 1.00544 1.18379 0.92367 0.91143 0.80929 0.95856 1.21656 1.31662 1.12944 0.91662 0.93072 1.25576 0.95200 0.95707 1.01443 1.69957 1.37180 1.23473 1.24293 0.85614 0.78390 0.78594 0.79696 1.19729 1.19661 1.21033 1.57715 1.70140 1.20938 1.35175 1.21334 1.01727 0.80441 1.00713 1.01169 0.73571 0.72258 0.72063 1.93504 1.69688 1.61012 1.75040 1.93570 1.74953 1.56837 1.73195 1.59116 1.66944 1.24235 1.34745 1.22352 0.97287 0.97751 0.84322 1.22799 0.95685 0.93290 1.03631 1.22684 0.99065 0.98617 0.94206 1.20411 0.91235 0.78520 1.02070 0.90308 1.20799 0.96039 0.95252 0.93964 1.22066 0.95132 1.01026 1.01046 1.23093 0.98550 0.89572 0.95916 1.67656 1.24584 1.23320 1.06569 1.23098 0.88815 0.99152 0.95648 1.22228 1.01602 0.95378 0.99448 0.94387 0.91430 0.93943 0.92584 0.94390 0.90337 0.90089 0.90270 0.90346 0.89898 0.86872 0.87918 0.89554 0.84321 0.80787 0.80715 0.83460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.75 8.95 71.98 0.64 -5.11 16 2 C 0.28 13.46 2.62 44.25 0.12 13.57 16 3 H 0.02 1.31 6.91 -2.39 -0.02 1.29 16 4 C -0.54 -29.45 8.37 25.60 0.21 -29.23 16 5 H 0.05 2.83 7.65 -2.91 -0.02 2.80 16 6 C 0.02 1.14 5.30 84.66 0.45 1.59 16 7 N -0.91 -50.51 11.32 21.45 0.24 -50.27 16 8 Si 0.95 43.51 29.54 68.60 2.03 45.53 16 9 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 12 N -1.00 -41.34 3.12 -520.44 -1.62 -42.96 16 13 C 0.10 3.59 9.53 127.77 1.22 4.81 16 14 S 2.80 111.34 6.26 -56.49 -0.35 110.99 16 15 O -1.01 -42.12 16.80 -128.00 -2.15 -44.27 16 16 O -1.00 -48.12 14.87 -128.00 -1.90 -50.03 16 17 N -1.01 -28.69 2.83 -488.08 -1.38 -30.07 16 18 C 0.11 2.09 6.98 86.86 0.61 2.70 16 19 C -0.12 -1.50 7.09 31.99 0.23 -1.27 16 20 C -0.11 -1.66 6.47 31.79 0.21 -1.46 16 21 C 0.18 4.70 3.29 44.60 0.15 4.84 16 22 H 0.08 2.20 8.06 -2.39 -0.02 2.18 16 23 C -0.05 -1.47 3.41 -19.67 -0.07 -1.54 16 24 C -0.17 -4.88 9.20 22.36 0.21 -4.68 16 25 C 0.08 2.42 11.18 84.68 0.95 3.37 16 26 N -0.51 -16.00 10.36 -195.84 -2.03 -18.03 16 27 C 0.09 2.59 11.18 84.68 0.95 3.53 16 28 C -0.17 -4.83 9.79 22.36 0.22 -4.61 16 29 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.07 3.31 6.07 -2.39 -0.01 3.29 16 31 H 0.04 1.72 6.66 -2.39 -0.02 1.71 16 32 H 0.26 13.93 8.31 -92.70 -0.77 13.16 16 33 H 0.04 1.37 8.14 -2.39 -0.02 1.36 16 34 H 0.08 2.18 7.79 -2.39 -0.02 2.16 16 35 H 0.08 2.64 6.43 -2.39 -0.02 2.63 16 36 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 38 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.09 1.22 7.78 -2.39 -0.02 1.20 16 42 H 0.14 3.44 7.82 -2.91 -0.02 3.41 16 43 H 0.18 3.85 8.06 -2.91 -0.02 3.83 16 44 H 0.18 4.03 8.06 -2.91 -0.02 4.01 16 45 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -73.49 374.42 -0.11 -73.61 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.98 Total: 18.99 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: 6.08 Total: -13.49 kcal Atomic # 7 Polarization: -136.54 SS G_CDS: -4.79 Total: -141.33 kcal Atomic # 8 Polarization: -90.24 SS G_CDS: -4.05 Total: -94.30 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: 111.34 SS G_CDS: -0.35 Total: 110.99 kcal Total: -73.49 -0.11 -73.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282965396.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.315 kcal (2) G-P(sol) polarization free energy of solvation -73.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds