Wall clock time and date at job start Sat Apr 11 2020 05:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47107 * 2 1 4 4 C 1.50704 * 109.47279 * 240.00784 * 2 1 3 5 5 H 1.07993 * 120.00151 * 240.00255 * 4 2 1 6 6 C 1.37879 * 119.99698 * 59.99551 * 4 2 1 7 7 N 1.31510 * 120.00154 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99961 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47260 * 89.99607 * 8 6 4 10 10 H 1.48502 * 109.47175 * 210.00272 * 8 6 4 11 11 H 1.48507 * 109.46602 * 329.99827 * 8 6 4 12 12 N 1.46494 * 109.47426 * 120.00519 * 2 1 3 13 13 C 1.46501 * 120.00110 * 65.20768 * 12 2 1 14 14 S 1.65599 * 120.00264 * 245.47967 * 12 2 1 15 15 O 1.42102 * 106.40349 * 205.10976 * 14 12 2 16 16 O 1.42094 * 106.40228 * 338.03220 * 14 12 2 17 17 N 1.65599 * 107.21516 * 91.57101 * 14 12 2 18 18 C 1.47427 * 125.65103 * 268.37263 * 17 14 12 19 19 C 1.54903 * 104.83476 * 155.83787 * 18 17 14 20 20 C 1.55160 * 101.58347 * 37.01004 * 19 18 17 21 21 C 1.47022 * 125.64881 * 88.06766 * 17 14 12 22 22 H 1.09000 * 109.88171 * 300.51128 * 21 17 14 23 23 C 1.50700 * 109.88498 * 61.67693 * 21 17 14 24 24 C 1.38656 * 120.78666 * 46.33912 * 23 21 17 25 25 C 1.38212 * 119.15627 * 179.80380 * 24 23 21 26 26 N 1.31868 * 120.76724 * 0.48173 * 25 24 23 27 27 C 1.31870 * 121.72440 * 359.75018 * 26 25 24 28 28 C 1.38203 * 120.76707 * 0.02562 * 27 26 25 29 29 H 1.09001 * 109.47066 * 293.35209 * 1 2 3 30 30 H 1.08996 * 109.47579 * 53.35303 * 1 2 3 31 31 H 1.09001 * 109.47049 * 173.35332 * 1 2 3 32 32 H 0.97005 * 119.99731 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.47364 * 89.99343 * 13 12 2 34 34 H 1.08999 * 109.47642 * 209.99847 * 13 12 2 35 35 H 1.09001 * 109.46849 * 329.99993 * 13 12 2 36 36 H 1.09005 * 110.36552 * 274.67797 * 18 17 14 37 37 H 1.09007 * 110.36216 * 36.99508 * 18 17 14 38 38 H 1.08993 * 111.00793 * 155.08670 * 19 18 17 39 39 H 1.09002 * 111.00408 * 278.93648 * 19 18 17 40 40 H 1.08996 * 110.71788 * 82.85938 * 20 19 18 41 41 H 1.08996 * 110.71745 * 205.95852 * 20 19 18 42 42 H 1.07997 * 120.41951 * 0.02562 * 24 23 21 43 43 H 1.08007 * 119.61169 * 180.20731 * 25 24 23 44 44 H 1.08000 * 119.61646 * 179.97438 * 27 26 25 45 45 H 1.07995 * 120.42012 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5883 -1.1316 6 6 1.6992 -0.2390 -2.4828 7 7 0.9434 0.8305 -2.6033 8 14 2.3212 -1.1198 -4.0082 9 1 1.3428 -2.1611 -4.4121 10 1 2.4864 -0.1406 -5.1123 11 1 3.6293 -1.7577 -3.7124 12 7 2.0183 -0.6907 1.1960 13 6 1.7610 -2.1222 1.3717 14 16 2.8555 0.1480 2.3527 15 8 3.6695 -0.8019 3.0269 16 8 3.3781 1.3033 1.7113 17 7 1.7510 0.6884 3.4620 18 6 1.0634 1.9920 3.4251 19 6 -0.2388 1.7766 4.2358 20 6 0.2494 0.8293 5.3636 21 6 1.2890 -0.0549 4.6433 22 1 0.8294 -0.9937 4.3342 23 6 2.4507 -0.3283 5.5635 24 6 3.3525 0.6746 5.8852 25 6 4.4035 0.3876 6.7358 26 7 4.5586 -0.8245 7.2314 27 6 3.7233 -1.8034 6.9435 28 6 2.6466 -1.5901 6.1038 29 1 -0.3633 0.4073 0.9435 30 1 -0.3634 0.6134 -0.8245 31 1 -0.3633 -1.0208 -0.1190 32 1 0.7087 1.1617 -3.4843 33 1 2.5766 -2.6949 0.9303 34 1 1.6903 -2.3509 2.4351 35 1 0.8245 -2.3859 0.8803 36 1 1.6796 2.7593 3.8938 37 1 0.8290 2.2682 2.3970 38 1 -0.6034 2.7179 4.6469 39 1 -1.0038 1.2961 3.6259 40 1 0.7133 1.3970 6.1701 41 1 -0.5745 0.2251 5.7433 42 1 3.2332 1.6682 5.4792 43 1 5.1084 1.1642 6.9940 44 1 3.8830 -2.7835 7.3683 45 1 1.9663 -2.3960 5.8714 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282965399.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:00 Heat of formation + Delta-G solvation = -30.096329 kcal Electronic energy + Delta-G solvation = -29266.322880 eV Core-core repulsion = 25410.860891 eV Total energy + Delta-G solvation = -3855.461989 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.38072 -38.33598 -36.72483 -36.17812 -35.24815 -32.93223 -32.60054 -31.17895 -30.88536 -29.18419 -28.48032 -25.53611 -25.22363 -23.75584 -23.40788 -21.87733 -21.11279 -20.69929 -18.59377 -17.53140 -17.28701 -16.63552 -16.27114 -16.03595 -15.69722 -15.54998 -15.04138 -14.54867 -14.06541 -13.85258 -13.67392 -13.63257 -13.32913 -13.25928 -13.12249 -12.88931 -12.61670 -12.02788 -11.82685 -11.79038 -11.56907 -11.51101 -11.40308 -11.36724 -11.29053 -11.18727 -11.01807 -10.86603 -10.84415 -10.53413 -10.31562 -10.05604 -9.66286 -9.44413 -9.25130 -9.09969 -8.93199 -8.50178 -8.00857 -6.11089 -4.17002 1.02708 1.18933 1.30566 3.25985 3.33177 3.36712 3.41339 3.82661 4.04431 4.29239 4.36991 4.44907 4.48325 4.60509 4.78289 4.94513 5.00326 5.09799 5.16976 5.21175 5.25760 5.42356 5.50615 5.61692 5.62580 5.68835 5.73782 5.75665 5.82997 6.00023 6.08857 6.09699 6.11338 6.28595 6.42259 6.47464 6.60048 6.72723 6.74579 6.78169 6.96888 7.41895 7.60382 7.75450 7.98670 7.99579 8.23708 8.85159 9.48804 10.95308 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018689 B = 0.003969 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.882613 B = 7053.784595 C = 7676.186409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.265 3.735 3 H 0.059 0.941 4 C -0.521 4.521 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.988 5.988 13 C 0.113 3.887 14 S 2.784 3.216 15 O -0.981 6.981 16 O -0.970 6.970 17 N -1.015 6.015 18 C 0.120 3.880 19 C -0.129 4.129 20 C -0.117 4.117 21 C 0.191 3.809 22 H 0.085 0.915 23 C -0.043 4.043 24 C -0.159 4.159 25 C 0.097 3.903 26 N -0.488 5.488 27 C 0.099 3.901 28 C -0.152 4.152 29 H 0.010 0.990 30 H 0.088 0.912 31 H 0.034 0.966 32 H 0.263 0.737 33 H 0.049 0.951 34 H 0.044 0.956 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.130 0.870 43 H 0.153 0.847 44 H 0.153 0.847 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.398 -0.531 17.662 18.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.162 3.838 3 H 0.077 0.923 4 C -0.560 4.560 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.831 5.831 13 C -0.033 4.033 14 S 2.795 3.205 15 O -0.965 6.965 16 O -0.954 6.954 17 N -0.852 5.852 18 C -0.005 4.005 19 C -0.167 4.167 20 C -0.156 4.156 21 C 0.084 3.916 22 H 0.103 0.897 23 C -0.052 4.052 24 C -0.179 4.179 25 C -0.059 4.059 26 N -0.198 5.198 27 C -0.058 4.058 28 C -0.173 4.173 29 H 0.029 0.971 30 H 0.107 0.893 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.100 0.900 42 H 0.148 0.852 43 H 0.170 0.830 44 H 0.171 0.829 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.749 -0.442 18.018 18.231 hybrid contribution -0.789 -0.422 -1.665 1.890 sum -3.538 -0.864 16.353 16.754 Atomic orbital electron populations 1.22109 0.98303 1.00673 0.99312 1.18775 0.91203 0.93134 0.80654 0.92288 1.21295 1.31781 1.13036 0.89934 0.91919 1.24903 0.94943 0.94973 0.98990 1.69871 1.36532 1.22608 1.23815 0.86496 0.79314 0.79309 0.82307 1.20619 1.21078 1.19827 1.57797 1.74212 1.17190 1.33908 1.21103 1.02131 0.81289 0.98789 1.01891 0.73341 0.73258 0.71970 1.93569 1.65022 1.62804 1.75109 1.93594 1.76601 1.50527 1.74726 1.59589 1.62026 1.25982 1.37552 1.21973 0.92475 0.84449 1.01623 1.22802 0.97342 0.99903 0.96696 1.22677 0.97438 0.97600 0.97901 1.20153 0.91223 0.96084 0.84143 0.89736 1.20580 0.95874 0.93632 0.95156 1.21935 0.96085 1.00387 0.99471 1.22670 0.95774 0.93983 0.93519 1.67621 1.27831 1.00770 1.23533 1.22656 0.90350 0.97971 0.94841 1.21921 0.99733 0.96814 0.98803 0.97111 0.89298 0.94684 0.92688 0.93254 0.93702 0.91001 0.91650 0.89942 0.89968 0.90174 0.90426 0.89966 0.85184 0.82995 0.82934 0.84914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.82 37.16 0.33 -2.85 16 2 C 0.27 6.42 2.66 -69.09 -0.18 6.24 16 3 H 0.06 1.60 6.80 -51.93 -0.35 1.25 16 4 C -0.52 -13.94 8.31 -34.44 -0.29 -14.22 16 5 H 0.06 1.68 7.35 -52.49 -0.39 1.29 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.47 11.40 55.43 0.63 -23.84 16 8 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 12 N -0.99 -20.49 3.12 -115.86 -0.36 -20.85 16 13 C 0.11 2.02 9.32 59.85 0.56 2.57 16 14 S 2.78 55.24 6.27 -107.50 -0.67 54.56 16 15 O -0.98 -20.43 15.58 -57.17 -0.89 -21.32 16 16 O -0.97 -22.82 16.18 -57.17 -0.93 -23.75 16 17 N -1.01 -15.02 3.05 -105.64 -0.32 -15.34 16 18 C 0.12 1.52 6.97 -2.53 -0.02 1.50 16 19 C -0.13 -1.18 7.08 -24.58 -0.17 -1.35 16 20 C -0.12 -1.02 6.42 -24.90 -0.16 -1.18 16 21 C 0.19 2.27 3.31 -68.11 -0.23 2.05 16 22 H 0.08 0.94 8.02 -51.93 -0.42 0.52 16 23 C -0.04 -0.55 3.39 -104.31 -0.35 -0.90 16 24 C -0.16 -2.08 9.13 -39.44 -0.36 -2.44 16 25 C 0.10 1.26 11.18 -17.55 -0.20 1.07 16 26 N -0.49 -6.83 10.36 -13.25 -0.14 -6.96 16 27 C 0.10 1.22 11.18 -17.55 -0.20 1.02 16 28 C -0.15 -1.83 9.78 -39.44 -0.39 -2.21 16 29 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.09 2.17 6.28 -51.93 -0.33 1.84 16 31 H 0.03 0.74 7.12 -51.93 -0.37 0.37 16 32 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 33 H 0.05 0.90 8.01 -51.93 -0.42 0.48 16 34 H 0.04 0.66 7.83 -51.93 -0.41 0.25 16 35 H 0.07 1.23 6.85 -51.93 -0.36 0.88 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 1.16 8.14 -51.92 -0.42 0.74 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.08 0.64 7.60 -51.93 -0.39 0.24 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.13 1.55 7.99 -52.49 -0.42 1.13 16 43 H 0.15 1.56 8.06 -52.48 -0.42 1.14 16 44 H 0.15 1.42 8.06 -52.49 -0.42 0.99 16 45 H 0.13 1.24 8.05 -52.49 -0.42 0.82 16 LS Contribution 374.85 15.07 5.65 5.65 Total: -1.00 -33.37 374.85 -10.58 -43.95 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -6.78 Total: 1.01 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -1.75 Total: -9.08 kcal Atomic # 7 Polarization: -66.81 SS G_CDS: -0.19 Total: -67.00 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -1.82 Total: -45.07 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 55.24 SS G_CDS: -0.67 Total: 54.56 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.37 -10.58 -43.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282965399.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.855 kcal (2) G-P(sol) polarization free energy of solvation -33.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds