Wall clock time and date at job start Sat Apr 11 2020 05:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08996 * 109.47149 * 2 1 4 4 C 1.50696 * 109.46978 * 239.99861 * 2 1 3 5 5 H 1.08000 * 120.00051 * 240.00277 * 4 2 1 6 6 C 1.37884 * 120.00222 * 60.00093 * 4 2 1 7 7 N 1.31514 * 119.99421 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00304 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47021 * 90.00013 * 8 6 4 10 10 H 1.48503 * 109.47222 * 210.00112 * 8 6 4 11 11 H 1.48502 * 109.46891 * 330.00232 * 8 6 4 12 12 N 1.46504 * 109.46922 * 120.00123 * 2 1 3 13 13 C 1.46494 * 119.99948 * 60.00027 * 12 2 1 14 14 S 1.65599 * 119.99802 * 239.99654 * 12 2 1 15 15 O 1.42103 * 106.40290 * 336.46460 * 14 12 2 16 16 O 1.42092 * 106.40379 * 203.53933 * 14 12 2 17 17 N 1.65601 * 107.21683 * 89.99926 * 14 12 2 18 18 C 1.46505 * 119.99714 * 89.99776 * 17 14 12 19 19 C 1.50697 * 109.47415 * 261.22172 * 18 17 14 20 20 C 1.38230 * 119.61703 * 95.09178 * 19 18 17 21 21 C 1.38620 * 119.16261 * 179.97438 * 20 19 18 22 22 C 1.38681 * 118.42247 * 0.02562 * 21 20 19 23 23 C 1.38183 * 119.15808 * 0.27687 * 22 21 20 24 24 N 1.31856 * 119.61825 * 275.07159 * 19 18 17 25 25 C 1.46495 * 120.00504 * 270.00166 * 17 14 12 26 26 C 1.52999 * 117.50172 * 182.18779 * 25 17 14 27 27 C 1.52998 * 117.50258 * 113.52657 * 25 17 14 28 28 H 1.08996 * 109.47149 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46603 * 300.00162 * 1 2 3 30 30 H 1.08998 * 109.46902 * 59.99827 * 1 2 3 31 31 H 0.97004 * 119.99491 * 179.97438 * 7 6 4 32 32 H 1.09006 * 109.47389 * 269.99685 * 13 12 2 33 33 H 1.08998 * 109.47561 * 29.99927 * 13 12 2 34 34 H 1.08999 * 109.47204 * 150.00326 * 13 12 2 35 35 H 1.09004 * 109.47094 * 141.22047 * 18 17 14 36 36 H 1.08996 * 109.47103 * 21.22490 * 18 17 14 37 37 H 1.08003 * 120.41548 * 359.95844 * 20 19 18 38 38 H 1.08002 * 120.79186 * 180.02562 * 21 20 19 39 39 H 1.07992 * 120.42143 * 180.02562 * 22 21 20 40 40 H 1.08001 * 119.61651 * 179.70778 * 23 22 21 41 41 H 1.09001 * 115.54673 * 327.85697 * 25 17 14 42 42 H 1.09001 * 117.49948 * 0.02562 * 26 25 17 43 43 H 1.09000 * 117.49802 * 145.01767 * 26 25 17 44 44 H 1.08994 * 117.50240 * 214.98056 * 27 25 17 45 45 H 1.09004 * 117.49569 * 359.97438 * 27 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9428 0.8296 -2.6034 8 14 2.3225 -1.1196 -4.0080 9 1 1.3447 -2.1616 -4.4124 10 1 2.4873 -0.1402 -5.1121 11 1 3.6308 -1.7566 -3.7119 12 7 2.0184 -0.6907 1.1962 13 6 1.6645 -2.0932 1.4280 14 16 2.9705 0.1141 2.2862 15 8 3.5795 1.1829 1.5748 16 8 3.7119 -0.8789 2.9815 17 7 1.9608 0.8090 3.3998 18 6 1.5813 0.0698 4.6063 19 6 0.2205 -0.5473 4.4103 20 6 0.1199 -1.8556 3.9756 21 6 -1.1366 -2.4139 3.7990 22 6 -2.2500 -1.6318 4.0668 23 6 -2.0713 -0.3293 4.4923 24 7 -0.8603 0.1669 4.6558 25 6 1.4470 2.1629 3.1784 26 6 0.5600 2.7689 4.2678 27 6 -0.0566 2.3180 2.9413 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.7088 1.1612 -3.4844 32 1 0.7376 -2.1444 1.9993 33 1 1.5295 -2.5969 0.4708 34 1 2.4629 -2.5819 1.9864 35 1 1.5520 0.7518 5.4562 36 1 2.3126 -0.7159 4.7961 37 1 1.0089 -2.4354 3.7760 38 1 -1.2458 -3.4338 3.4608 39 1 -3.2442 -2.0343 3.9406 40 1 -2.9333 0.2879 4.6984 41 1 2.1135 2.8364 2.6396 42 1 0.3591 2.1604 5.1496 43 1 0.6427 3.8412 4.4456 44 1 -0.3793 3.0937 2.2470 45 1 -0.6634 1.4126 2.9497 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282998341.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:06 Heat of formation + Delta-G solvation = 12.014878 kcal Electronic energy + Delta-G solvation = -30024.777878 eV Core-core repulsion = 26171.141967 eV Total energy + Delta-G solvation = -3853.635910 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.38523 -37.73892 -36.77152 -36.14177 -35.24656 -33.69895 -32.68658 -32.40764 -31.02398 -29.06735 -26.60687 -25.56470 -25.16694 -23.52144 -22.45261 -22.07675 -21.18301 -20.39947 -18.48000 -17.65148 -17.17948 -16.77474 -16.36491 -16.01404 -15.84382 -15.54325 -15.03304 -14.68578 -14.35026 -14.07999 -13.70258 -13.43930 -13.17025 -13.13597 -12.69922 -12.36367 -12.15844 -12.10586 -11.99010 -11.68738 -11.66193 -11.35849 -11.25343 -11.20232 -11.01958 -10.94594 -10.86662 -10.80955 -10.44208 -10.20140 -10.05437 -10.00288 -9.77697 -9.44180 -9.23199 -8.99453 -8.57827 -8.43525 -7.90761 -6.06124 -4.12672 0.95106 1.21145 1.30971 3.27683 3.32261 3.35121 3.39576 3.83109 4.04334 4.14083 4.24261 4.40208 4.64627 4.82371 4.84434 5.00176 5.09365 5.16933 5.24467 5.25578 5.30571 5.37283 5.49160 5.62462 5.65568 5.71102 5.76524 5.98990 6.06983 6.11505 6.17089 6.25943 6.32381 6.50045 6.55522 6.63882 6.68819 6.77138 6.86310 6.93547 7.09303 7.49394 7.65204 7.81540 7.96903 8.07184 8.29731 8.89049 9.52660 10.99293 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012907 B = 0.005135 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.886043 B = 5451.466374 C = 5936.742468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.273 3.727 3 H 0.057 0.943 4 C -0.520 4.520 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.983 5.983 13 C 0.085 3.915 14 S 2.776 3.224 15 O -0.968 6.968 16 O -0.995 6.995 17 N -0.974 5.974 18 C 0.163 3.837 19 C 0.106 3.894 20 C -0.157 4.157 21 C -0.073 4.073 22 C -0.170 4.170 23 C 0.095 3.905 24 N -0.461 5.461 25 C 0.076 3.924 26 C -0.171 4.171 27 C -0.181 4.181 28 H 0.027 0.973 29 H 0.012 0.988 30 H 0.090 0.910 31 H 0.262 0.738 32 H 0.046 0.954 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.139 0.861 38 H 0.134 0.866 39 H 0.131 0.869 40 H 0.153 0.847 41 H 0.135 0.865 42 H 0.110 0.890 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.549 -2.714 15.540 17.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.170 3.830 3 H 0.075 0.925 4 C -0.560 4.560 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.825 5.825 13 C -0.062 4.062 14 S 2.787 3.213 15 O -0.952 6.952 16 O -0.979 6.979 17 N -0.807 5.807 18 C 0.036 3.964 19 C -0.033 4.033 20 C -0.177 4.177 21 C -0.099 4.099 22 C -0.190 4.190 23 C -0.063 4.063 24 N -0.171 5.171 25 C -0.031 4.031 26 C -0.210 4.210 27 C -0.221 4.221 28 H 0.046 0.954 29 H 0.031 0.969 30 H 0.108 0.892 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.115 0.885 36 H 0.125 0.875 37 H 0.157 0.843 38 H 0.152 0.848 39 H 0.149 0.851 40 H 0.170 0.830 41 H 0.152 0.848 42 H 0.128 0.872 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.509 -1.673 15.683 16.707 hybrid contribution -0.520 -1.442 -1.381 2.063 sum -6.029 -3.114 14.302 15.830 Atomic orbital electron populations 1.22065 0.98239 0.99322 1.00524 1.18672 0.91265 0.92866 0.80199 0.92494 1.21341 1.31575 1.12975 0.90130 0.92030 1.24896 0.94989 0.95002 0.98926 1.69869 1.36506 1.22643 1.23689 0.86522 0.79267 0.79300 0.82460 1.20723 1.21117 1.19849 1.57666 1.69695 1.19568 1.35552 1.21670 0.98900 0.82679 1.02927 1.02109 0.73811 0.73072 0.72334 1.93587 1.74005 1.55747 1.71869 1.93504 1.69324 1.60365 1.74720 1.57862 1.65996 1.22909 1.33983 1.20193 0.90657 0.96574 0.88992 1.21681 0.95260 0.90917 0.95448 1.22146 0.99118 0.96700 0.99786 1.21547 0.92237 1.00228 0.95903 1.22111 0.99770 0.95947 1.01221 1.22707 0.94789 0.93265 0.95508 1.67497 0.98380 1.36830 1.14410 1.21492 0.92820 0.84159 1.04641 1.23244 1.03055 1.00370 0.94318 1.23415 0.96203 1.03806 0.98634 0.95355 0.96915 0.89192 0.92755 0.93612 0.89899 0.92107 0.88474 0.87479 0.84292 0.84817 0.85078 0.82992 0.84750 0.87155 0.89062 0.88989 0.87790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 8.97 37.16 0.33 -2.92 16 2 C 0.27 6.67 2.62 -69.08 -0.18 6.49 16 3 H 0.06 1.57 6.91 -51.93 -0.36 1.21 16 4 C -0.52 -13.98 7.99 -34.44 -0.28 -14.26 16 5 H 0.06 1.64 7.33 -52.49 -0.38 1.26 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.75 11.32 55.43 0.63 -24.12 16 8 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 12 N -0.98 -20.39 3.12 -115.85 -0.36 -20.75 16 13 C 0.08 1.48 8.59 59.84 0.51 1.99 16 14 S 2.78 55.62 6.11 -107.50 -0.66 54.96 16 15 O -0.97 -22.98 15.55 -57.17 -0.89 -23.87 16 16 O -1.00 -20.11 15.27 -57.17 -0.87 -20.98 16 17 N -0.97 -15.68 3.18 -108.57 -0.35 -16.02 16 18 C 0.16 2.16 5.45 -5.19 -0.03 2.13 16 19 C 0.11 1.38 5.70 -82.59 -0.47 0.91 16 20 C -0.16 -1.91 7.05 -39.44 -0.28 -2.19 16 21 C -0.07 -0.77 9.99 -39.28 -0.39 -1.17 16 22 C -0.17 -1.69 10.11 -39.44 -0.40 -2.09 16 23 C 0.09 1.03 11.07 -17.55 -0.19 0.83 16 24 N -0.46 -5.81 6.16 -9.47 -0.06 -5.87 16 25 C 0.08 1.18 6.31 -67.93 -0.43 0.75 16 26 C -0.17 -2.16 9.32 -26.70 -0.25 -2.41 16 27 C -0.18 -2.71 9.16 -26.70 -0.24 -2.95 16 28 H 0.03 0.61 7.67 -51.93 -0.40 0.22 16 29 H 0.01 0.25 7.17 -51.93 -0.37 -0.12 16 30 H 0.09 2.29 6.07 -51.93 -0.32 1.98 16 31 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.05 0.70 4.41 -51.93 -0.23 0.47 16 33 H 0.08 1.53 7.02 -51.93 -0.36 1.17 16 34 H 0.06 0.98 6.99 -51.93 -0.36 0.61 16 35 H 0.10 1.12 6.55 -51.93 -0.34 0.78 16 36 H 0.11 1.35 6.76 -51.93 -0.35 1.00 16 37 H 0.14 1.61 6.59 -52.48 -0.35 1.26 16 38 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 39 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 40 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 41 H 0.14 2.21 7.49 -51.93 -0.39 1.82 16 42 H 0.11 1.36 5.21 -51.93 -0.27 1.09 16 43 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 45 H 0.10 1.66 5.10 -51.93 -0.26 1.40 16 LS Contribution 359.24 15.07 5.41 5.41 Total: -1.00 -31.87 359.24 -10.55 -42.42 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -6.00 Total: 5.94 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -2.39 Total: -13.23 kcal Atomic # 7 Polarization: -66.63 SS G_CDS: -0.14 Total: -66.76 kcal Atomic # 8 Polarization: -43.09 SS G_CDS: -1.76 Total: -44.85 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 55.62 SS G_CDS: -0.66 Total: 54.96 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.87 -10.55 -42.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282998341.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.437 kcal (2) G-P(sol) polarization free energy of solvation -31.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds