Wall clock time and date at job start Sat Apr 11 2020 05:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08996 * 109.47149 * 2 1 4 4 C 1.50696 * 109.46978 * 239.99861 * 2 1 3 5 5 H 1.08000 * 120.00051 * 240.00277 * 4 2 1 6 6 C 1.37884 * 120.00222 * 60.00093 * 4 2 1 7 7 N 1.31514 * 119.99421 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00304 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47021 * 90.00013 * 8 6 4 10 10 H 1.48503 * 109.47222 * 210.00112 * 8 6 4 11 11 H 1.48502 * 109.46891 * 330.00232 * 8 6 4 12 12 N 1.46504 * 109.46922 * 120.00123 * 2 1 3 13 13 C 1.46494 * 119.99948 * 60.00027 * 12 2 1 14 14 S 1.65599 * 119.99802 * 239.99654 * 12 2 1 15 15 O 1.42103 * 106.40290 * 336.46460 * 14 12 2 16 16 O 1.42092 * 106.40379 * 203.53933 * 14 12 2 17 17 N 1.65601 * 107.21683 * 89.99926 * 14 12 2 18 18 C 1.46505 * 119.99714 * 89.99776 * 17 14 12 19 19 C 1.50697 * 109.47415 * 261.22172 * 18 17 14 20 20 C 1.38230 * 119.61703 * 95.09178 * 19 18 17 21 21 C 1.38620 * 119.16261 * 179.97438 * 20 19 18 22 22 C 1.38681 * 118.42247 * 0.02562 * 21 20 19 23 23 C 1.38183 * 119.15808 * 0.27687 * 22 21 20 24 24 N 1.31856 * 119.61825 * 275.07159 * 19 18 17 25 25 C 1.46495 * 120.00504 * 270.00166 * 17 14 12 26 26 C 1.52999 * 117.50172 * 182.18779 * 25 17 14 27 27 C 1.52998 * 117.50258 * 113.52657 * 25 17 14 28 28 H 1.08996 * 109.47149 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46603 * 300.00162 * 1 2 3 30 30 H 1.08998 * 109.46902 * 59.99827 * 1 2 3 31 31 H 0.97004 * 119.99491 * 179.97438 * 7 6 4 32 32 H 1.09006 * 109.47389 * 269.99685 * 13 12 2 33 33 H 1.08998 * 109.47561 * 29.99927 * 13 12 2 34 34 H 1.08999 * 109.47204 * 150.00326 * 13 12 2 35 35 H 1.09004 * 109.47094 * 141.22047 * 18 17 14 36 36 H 1.08996 * 109.47103 * 21.22490 * 18 17 14 37 37 H 1.08003 * 120.41548 * 359.95844 * 20 19 18 38 38 H 1.08002 * 120.79186 * 180.02562 * 21 20 19 39 39 H 1.07992 * 120.42143 * 180.02562 * 22 21 20 40 40 H 1.08001 * 119.61651 * 179.70778 * 23 22 21 41 41 H 1.09001 * 115.54673 * 327.85697 * 25 17 14 42 42 H 1.09001 * 117.49948 * 0.02562 * 26 25 17 43 43 H 1.09000 * 117.49802 * 145.01767 * 26 25 17 44 44 H 1.08994 * 117.50240 * 214.98056 * 27 25 17 45 45 H 1.09004 * 117.49569 * 359.97438 * 27 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9428 0.8296 -2.6034 8 14 2.3225 -1.1196 -4.0080 9 1 1.3447 -2.1616 -4.4124 10 1 2.4873 -0.1402 -5.1121 11 1 3.6308 -1.7566 -3.7119 12 7 2.0184 -0.6907 1.1962 13 6 1.6645 -2.0932 1.4280 14 16 2.9705 0.1141 2.2862 15 8 3.5795 1.1829 1.5748 16 8 3.7119 -0.8789 2.9815 17 7 1.9608 0.8090 3.3998 18 6 1.5813 0.0698 4.6063 19 6 0.2205 -0.5473 4.4103 20 6 0.1199 -1.8556 3.9756 21 6 -1.1366 -2.4139 3.7990 22 6 -2.2500 -1.6318 4.0668 23 6 -2.0713 -0.3293 4.4923 24 7 -0.8603 0.1669 4.6558 25 6 1.4470 2.1629 3.1784 26 6 0.5600 2.7689 4.2678 27 6 -0.0566 2.3180 2.9413 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.7088 1.1612 -3.4844 32 1 0.7376 -2.1444 1.9993 33 1 1.5295 -2.5969 0.4708 34 1 2.4629 -2.5819 1.9864 35 1 1.5520 0.7518 5.4562 36 1 2.3126 -0.7159 4.7961 37 1 1.0089 -2.4354 3.7760 38 1 -1.2458 -3.4338 3.4608 39 1 -3.2442 -2.0343 3.9406 40 1 -2.9333 0.2879 4.6984 41 1 2.1135 2.8364 2.6396 42 1 0.3591 2.1604 5.1496 43 1 0.6427 3.8412 4.4456 44 1 -0.3793 3.0937 2.2470 45 1 -0.6634 1.4126 2.9497 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282998341.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:05 Heat of formation + Delta-G solvation = -8.239521 kcal Electronic energy + Delta-G solvation = -30025.656174 eV Core-core repulsion = 26171.141967 eV Total energy + Delta-G solvation = -3854.514207 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -41.27089 -38.88998 -38.41863 -37.89524 -36.94281 -34.80574 -34.54369 -33.34830 -32.03915 -30.89984 -27.64415 -27.24286 -27.05686 -24.36918 -23.40936 -23.30743 -22.64356 -21.90289 -19.88049 -19.13707 -18.70268 -18.18939 -17.92671 -17.17357 -16.99274 -16.74641 -16.44383 -16.08003 -15.82192 -15.19746 -15.12275 -14.73332 -14.70371 -14.28365 -13.98956 -13.81064 -13.62575 -13.48655 -13.27160 -13.22780 -13.14543 -13.07249 -12.83126 -12.69991 -12.64699 -12.60688 -12.24047 -12.14502 -12.06440 -12.01366 -11.88879 -11.23737 -11.14493 -10.63743 -10.50496 -10.31433 -9.89915 -9.79781 -9.55224 -8.11818 -6.25614 -0.45459 0.23321 0.45252 1.40613 1.43118 1.52431 1.92104 2.40195 2.50314 2.91928 3.01695 3.16191 3.31145 3.35811 3.75100 3.95902 4.01162 4.10243 4.13911 4.17136 4.22375 4.29202 4.32121 4.56054 4.62198 4.72070 4.73816 4.79131 4.88277 4.93373 4.96815 5.02060 5.12175 5.16192 5.23335 5.28135 5.35127 5.35960 5.45432 5.55255 5.60710 5.76130 5.86624 5.89085 6.14324 6.29589 6.81922 7.11021 7.43025 8.92177 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012907 B = 0.005135 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.886043 B = 5451.466374 C = 5936.742468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.283 3.717 3 H 0.019 0.981 4 C -0.539 4.539 5 H 0.057 0.943 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.955 3.045 9 H -0.269 1.269 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.991 5.991 13 C 0.082 3.918 14 S 2.787 3.213 15 O -1.012 7.012 16 O -1.000 7.000 17 N -0.964 5.964 18 C 0.157 3.843 19 C 0.089 3.911 20 C -0.173 4.173 21 C -0.078 4.078 22 C -0.166 4.166 23 C 0.084 3.916 24 N -0.474 5.474 25 C 0.049 3.951 26 C -0.133 4.133 27 C -0.188 4.188 28 H 0.035 0.965 29 H 0.027 0.973 30 H 0.063 0.937 31 H 0.264 0.736 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.140 0.860 38 H 0.156 0.844 39 H 0.159 0.841 40 H 0.175 0.825 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.113 0.887 44 H 0.089 0.911 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.117 -3.766 16.795 19.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.179 3.821 3 H 0.037 0.963 4 C -0.579 4.579 5 H 0.075 0.925 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.781 3.219 9 H -0.194 1.194 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.832 5.832 13 C -0.064 4.064 14 S 2.798 3.202 15 O -0.997 6.997 16 O -0.984 6.984 17 N -0.800 5.800 18 C 0.032 3.968 19 C -0.050 4.050 20 C -0.193 4.193 21 C -0.104 4.104 22 C -0.186 4.186 23 C -0.073 4.073 24 N -0.184 5.184 25 C -0.058 4.058 26 C -0.172 4.172 27 C -0.227 4.227 28 H 0.054 0.946 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.134 0.866 36 H 0.129 0.871 37 H 0.158 0.842 38 H 0.174 0.826 39 H 0.177 0.823 40 H 0.192 0.808 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.132 0.868 44 H 0.107 0.893 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.071 -2.755 16.951 18.572 hybrid contribution -0.094 -1.109 -1.662 2.001 sum -7.165 -3.864 15.288 17.320 Atomic orbital electron populations 1.21792 0.97016 0.99445 0.99876 1.18264 0.91939 0.90987 0.80954 0.96334 1.21659 1.31676 1.13056 0.91476 0.92477 1.25633 0.95205 0.95687 1.01619 1.69991 1.37256 1.23642 1.24275 0.85607 0.78800 0.78444 0.79082 1.19407 1.20975 1.19940 1.57545 1.69697 1.20888 1.35043 1.21852 1.00729 0.80876 1.02897 1.01530 0.73944 0.72379 0.72313 1.93525 1.75544 1.57252 1.73340 1.93484 1.69861 1.60494 1.74578 1.57443 1.65653 1.23085 1.33817 1.20430 0.91405 0.96923 0.88060 1.21577 0.95094 0.91458 0.96841 1.22273 1.00027 0.96641 1.00395 1.21890 0.91784 1.01388 0.95358 1.22463 1.00946 0.95484 0.99666 1.23188 0.94844 0.94160 0.95098 1.67451 0.98861 1.37184 1.14877 1.21566 0.93028 0.83884 1.07292 1.23309 0.99087 1.01559 0.93226 1.23389 0.95253 1.03692 1.00410 0.94634 0.95421 0.91819 0.92690 0.91021 0.91033 0.90778 0.86556 0.87128 0.84236 0.82606 0.82305 0.80782 0.86440 0.86223 0.86838 0.89297 0.88448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.61 8.97 71.99 0.65 -4.96 16 2 C 0.28 14.15 2.62 44.25 0.12 14.26 16 3 H 0.02 1.08 6.91 -2.39 -0.02 1.07 16 4 C -0.54 -29.44 7.99 25.60 0.20 -29.24 16 5 H 0.06 3.09 7.33 -2.91 -0.02 3.07 16 6 C 0.02 1.01 5.30 84.66 0.45 1.46 16 7 N -0.91 -51.72 11.32 21.45 0.24 -51.47 16 8 Si 0.96 43.49 29.54 68.60 2.03 45.52 16 9 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 11 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 12 N -0.99 -41.48 3.12 -520.44 -1.62 -43.10 16 13 C 0.08 2.80 8.59 127.77 1.10 3.90 16 14 S 2.79 113.49 6.11 -56.49 -0.35 113.14 16 15 O -1.01 -50.11 15.55 -128.00 -1.99 -52.10 16 16 O -1.00 -40.37 15.27 -128.00 -1.95 -42.32 16 17 N -0.96 -30.77 3.18 -497.42 -1.58 -32.35 16 18 C 0.16 3.97 5.45 85.63 0.47 4.44 16 19 C 0.09 2.16 5.70 42.55 0.24 2.41 16 20 C -0.17 -3.87 7.05 22.36 0.16 -3.71 16 21 C -0.08 -1.44 9.99 22.47 0.22 -1.21 16 22 C -0.17 -2.75 10.11 22.36 0.23 -2.53 16 23 C 0.08 1.59 11.07 84.67 0.94 2.53 16 24 N -0.47 -10.87 6.16 -183.88 -1.13 -12.00 16 25 C 0.05 1.52 6.31 44.99 0.28 1.81 16 26 C -0.13 -3.11 9.32 30.62 0.29 -2.82 16 27 C -0.19 -5.46 9.16 30.62 0.28 -5.18 16 28 H 0.03 1.53 7.67 -2.39 -0.02 1.51 16 29 H 0.03 1.14 7.17 -2.39 -0.02 1.13 16 30 H 0.06 3.29 6.07 -2.39 -0.01 3.28 16 31 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 32 H 0.07 2.07 4.41 -2.38 -0.01 2.06 16 33 H 0.07 2.61 7.02 -2.39 -0.02 2.59 16 34 H 0.07 2.32 6.99 -2.39 -0.02 2.30 16 35 H 0.12 2.45 6.55 -2.38 -0.02 2.44 16 36 H 0.11 2.68 6.76 -2.39 -0.02 2.66 16 37 H 0.14 3.00 6.59 -2.91 -0.02 2.98 16 38 H 0.16 2.08 8.06 -2.91 -0.02 2.05 16 39 H 0.16 1.71 8.06 -2.91 -0.02 1.68 16 40 H 0.18 2.36 8.06 -2.91 -0.02 2.34 16 41 H 0.12 4.02 7.49 -2.39 -0.02 4.01 16 42 H 0.12 2.61 5.21 -2.39 -0.01 2.60 16 43 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 45 H 0.10 2.99 5.10 -2.38 -0.01 2.98 16 Total: -1.00 -69.64 359.24 0.27 -69.36 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: 1.02 Total: 24.18 kcal Atomic # 6 Polarization: -24.47 SS G_CDS: 5.62 Total: -18.85 kcal Atomic # 7 Polarization: -134.83 SS G_CDS: -4.10 Total: -138.93 kcal Atomic # 8 Polarization: -90.48 SS G_CDS: -3.94 Total: -94.42 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: 113.49 SS G_CDS: -0.35 Total: 113.14 kcal Total: -69.64 0.27 -69.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282998341.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.123 kcal (2) G-P(sol) polarization free energy of solvation -69.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds