Wall clock time and date at job start Sat Apr 11 2020 05:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46479 * 2 1 4 4 C 1.50691 * 109.47495 * 120.00187 * 2 1 3 5 5 H 1.07999 * 120.00024 * 120.00100 * 4 2 1 6 6 C 1.37886 * 119.99914 * 300.00482 * 4 2 1 7 7 N 1.31512 * 119.99845 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99644 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47214 * 60.00035 * 8 6 4 10 10 H 1.48506 * 109.46883 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47560 * 299.99550 * 8 6 4 12 12 N 1.46494 * 109.47140 * 240.00753 * 2 1 3 13 13 C 1.46500 * 119.99797 * 299.99335 * 12 2 1 14 14 S 1.65597 * 120.00518 * 119.99642 * 12 2 1 15 15 O 1.42097 * 106.40599 * 156.45779 * 14 12 2 16 16 O 1.42101 * 106.39931 * 23.53650 * 14 12 2 17 17 N 1.65598 * 107.21726 * 270.00077 * 14 12 2 18 18 C 1.46494 * 120.00385 * 89.99907 * 17 14 12 19 19 C 1.50703 * 109.47510 * 93.47845 * 18 17 14 20 20 C 1.38226 * 119.61703 * 95.07156 * 19 18 17 21 21 C 1.38627 * 119.15924 * 179.97438 * 20 19 18 22 22 C 1.38680 * 118.42278 * 359.97438 * 21 20 19 23 23 C 1.38182 * 119.16022 * 0.27920 * 22 21 20 24 24 N 1.31858 * 119.61611 * 275.05280 * 19 18 17 25 25 C 1.46503 * 119.99779 * 269.99657 * 17 14 12 26 26 C 1.53002 * 117.49779 * 181.98509 * 25 17 14 27 27 C 1.52995 * 117.49901 * 113.36011 * 25 17 14 28 28 H 1.09005 * 109.46479 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47475 * 299.99241 * 1 2 3 30 30 H 1.08994 * 109.47386 * 60.00007 * 1 2 3 31 31 H 0.97004 * 119.99249 * 180.02562 * 7 6 4 32 32 H 1.09003 * 109.47391 * 270.00165 * 13 12 2 33 33 H 1.09003 * 109.47012 * 30.00437 * 13 12 2 34 34 H 1.09002 * 109.47367 * 149.99859 * 13 12 2 35 35 H 1.09002 * 109.47254 * 333.47627 * 18 17 14 36 36 H 1.08996 * 109.47605 * 213.47838 * 18 17 14 37 37 H 1.07993 * 120.42163 * 359.96248 * 20 19 18 38 38 H 1.08001 * 120.79066 * 180.02562 * 21 20 19 39 39 H 1.07993 * 120.41872 * 180.02562 * 22 21 20 40 40 H 1.08001 * 119.61885 * 179.69886 * 23 22 21 41 41 H 1.09001 * 115.54997 * 327.68561 * 25 17 14 42 42 H 1.08996 * 117.49987 * 359.97438 * 26 25 17 43 43 H 1.09001 * 117.49896 * 145.02420 * 26 25 17 44 44 H 1.09002 * 117.50064 * 214.97811 * 27 25 17 45 45 H 1.08995 * 117.50049 * 359.97438 * 27 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.6534 -1.5884 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3215 -1.1205 4.0078 9 1 3.8065 -1.1209 4.0080 10 1 1.8270 -0.4201 5.2204 11 1 1.8261 -2.5203 4.0076 12 7 2.0183 -0.6904 -1.1962 13 6 1.6645 -2.0930 -1.4281 14 16 2.9703 0.1144 -2.2863 15 8 3.7118 -0.8786 -2.9816 16 8 3.5793 1.1832 -1.5748 17 7 1.9605 0.8093 -3.3997 18 6 1.4467 2.1632 -3.1783 19 6 2.3487 3.1605 -3.8586 20 6 2.0389 3.6056 -5.1300 21 6 2.8749 4.5235 -5.7467 22 6 3.9962 4.9617 -5.0583 23 6 4.2442 4.4679 -3.7917 24 7 3.4241 3.5986 -3.2340 25 6 1.5811 0.0701 -4.6063 26 6 0.6831 0.7837 -5.6189 27 6 0.1145 -0.3409 -4.7511 28 1 -0.3632 -1.0278 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 0.7095 1.1616 3.4845 32 1 2.4159 -2.7375 -0.9718 33 1 0.6905 -2.3001 -0.9848 34 1 1.6238 -2.2850 -2.5003 35 1 1.4175 2.3703 -2.1085 36 1 0.4410 2.2422 -3.5911 37 1 1.1568 3.2429 -5.6366 38 1 2.6578 4.8892 -6.7394 39 1 4.6692 5.6766 -5.5079 40 1 5.1179 4.8004 -3.2508 41 1 2.3360 -0.6128 -4.9962 42 1 0.3743 1.8030 -5.3871 43 1 0.8471 0.5704 -6.6752 44 1 -0.0956 -1.2940 -5.2365 45 1 -0.5680 -0.0617 -3.9485 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282998345.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:10 Heat of formation + Delta-G solvation = -15.588777 kcal Electronic energy + Delta-G solvation = -29145.506179 eV Core-core repulsion = 25290.673285 eV Total energy + Delta-G solvation = -3854.832895 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -41.19108 -39.05416 -38.30129 -37.85915 -36.79256 -34.80701 -34.51732 -33.25207 -32.12304 -30.89742 -27.65283 -27.27924 -26.98922 -24.54805 -23.44881 -23.13496 -22.63540 -22.01671 -19.83942 -19.03799 -18.60329 -18.06933 -17.86212 -17.43169 -16.95866 -16.84867 -16.41602 -16.04993 -15.66288 -15.19487 -15.07497 -14.74626 -14.59428 -14.39099 -13.97987 -13.81835 -13.63303 -13.41737 -13.28803 -13.14700 -13.04262 -12.99352 -12.94084 -12.77592 -12.59665 -12.57178 -12.30350 -12.20915 -12.13728 -11.86669 -11.83347 -11.25501 -11.14646 -10.76727 -10.49764 -10.30770 -9.99414 -9.78551 -9.58462 -8.11097 -6.24482 -0.39805 0.20390 0.46210 1.41222 1.43890 1.50681 2.00142 2.42378 2.57739 2.87472 2.99942 3.16819 3.32314 3.44631 3.74662 3.84026 3.92422 4.06051 4.09796 4.13278 4.22106 4.29129 4.30887 4.46719 4.60320 4.68570 4.75933 4.80107 4.81724 4.92858 4.99721 5.02850 5.08317 5.14416 5.16145 5.22711 5.24124 5.31352 5.36657 5.58273 5.61862 5.83175 5.84792 5.90025 6.16657 6.31740 6.82177 7.20649 7.43981 8.92716 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014414 B = 0.004311 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.146498 B = 6492.877015 C = 7338.323645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.276 3.724 3 H 0.022 0.978 4 C -0.540 4.540 5 H 0.052 0.948 6 C 0.020 3.980 7 N -0.912 5.912 8 Si 0.953 3.047 9 H -0.282 1.282 10 H -0.279 1.279 11 H -0.265 1.265 12 N -0.996 5.996 13 C 0.106 3.894 14 S 2.783 3.217 15 O -1.016 7.016 16 O -0.989 6.989 17 N -0.964 5.964 18 C 0.172 3.828 19 C 0.081 3.919 20 C -0.155 4.155 21 C -0.077 4.077 22 C -0.165 4.165 23 C 0.068 3.932 24 N -0.506 5.506 25 C 0.040 3.960 26 C -0.157 4.157 27 C -0.182 4.182 28 H 0.042 0.958 29 H 0.066 0.934 30 H 0.036 0.964 31 H 0.264 0.736 32 H 0.036 0.964 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.129 0.871 37 H 0.167 0.833 38 H 0.175 0.825 39 H 0.166 0.834 40 H 0.157 0.843 41 H 0.126 0.874 42 H 0.112 0.888 43 H 0.127 0.873 44 H 0.119 0.881 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.083 4.652 -21.574 22.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.171 3.829 3 H 0.039 0.961 4 C -0.580 4.580 5 H 0.070 0.930 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.778 3.222 9 H -0.208 1.208 10 H -0.204 1.204 11 H -0.190 1.190 12 N -0.837 5.837 13 C -0.039 4.039 14 S 2.794 3.206 15 O -1.000 7.000 16 O -0.973 6.973 17 N -0.801 5.801 18 C 0.046 3.954 19 C -0.058 4.058 20 C -0.175 4.175 21 C -0.103 4.103 22 C -0.185 4.185 23 C -0.089 4.089 24 N -0.216 5.216 25 C -0.066 4.066 26 C -0.195 4.195 27 C -0.221 4.221 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.146 0.854 37 H 0.185 0.815 38 H 0.192 0.808 39 H 0.184 0.816 40 H 0.174 0.826 41 H 0.143 0.857 42 H 0.130 0.870 43 H 0.145 0.855 44 H 0.137 0.863 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.012 4.485 -20.546 21.245 hybrid contribution 0.233 -0.074 0.779 0.816 sum -2.779 4.411 -19.767 20.443 Atomic orbital electron populations 1.21880 0.96605 1.00185 1.00445 1.18369 0.92338 0.91120 0.81024 0.96053 1.21608 1.31725 1.12985 0.91663 0.92992 1.25606 0.95197 0.95700 1.01509 1.69966 1.37212 1.23537 1.24346 0.85698 0.78364 0.79168 0.78928 1.20756 1.20441 1.18991 1.57695 1.70066 1.20890 1.35060 1.21291 1.01529 0.80468 1.00644 1.01741 0.73967 0.72387 0.72477 1.93461 1.70049 1.61404 1.75040 1.93622 1.74570 1.56233 1.72857 1.57469 1.66964 1.22388 1.33305 1.20139 0.96781 0.78147 1.00356 1.21794 0.93712 0.96673 0.93620 1.22393 1.02322 0.98297 0.94488 1.22062 0.92827 0.94303 1.01088 1.22530 0.99349 1.01391 0.95232 1.23164 0.98092 0.93167 0.94466 1.67613 1.04336 1.11047 1.38613 1.21736 0.95002 1.01071 0.88768 1.23586 1.00252 0.98312 0.97352 1.23507 0.94814 1.00764 1.02997 0.93852 0.91538 0.94504 0.92639 0.94536 0.90181 0.90465 0.91319 0.85355 0.81543 0.80776 0.81627 0.82553 0.85666 0.86965 0.85528 0.86323 0.88476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.98 8.95 71.98 0.64 -5.33 16 2 C 0.28 14.08 2.62 44.24 0.12 14.20 16 3 H 0.02 1.26 6.91 -2.38 -0.02 1.25 16 4 C -0.54 -30.43 8.37 25.60 0.21 -30.22 16 5 H 0.05 2.94 7.65 -2.91 -0.02 2.91 16 6 C 0.02 1.11 5.30 84.66 0.45 1.56 16 7 N -0.91 -52.35 11.32 21.45 0.24 -52.11 16 8 Si 0.95 44.57 29.54 68.60 2.03 46.59 16 9 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 12 N -1.00 -43.56 3.12 -520.46 -1.62 -45.18 16 13 C 0.11 3.91 9.53 127.77 1.22 5.12 16 14 S 2.78 120.18 6.01 -56.49 -0.34 119.85 16 15 O -1.02 -45.77 16.06 -128.00 -2.06 -47.82 16 16 O -0.99 -51.43 15.05 -128.00 -1.93 -53.36 16 17 N -0.96 -30.79 3.15 -497.42 -1.57 -32.35 16 18 C 0.17 5.15 5.13 85.64 0.44 5.59 16 19 C 0.08 2.40 6.36 42.55 0.27 2.67 16 20 C -0.16 -3.03 9.09 22.36 0.20 -2.83 16 21 C -0.08 -1.22 10.18 22.47 0.23 -0.99 16 22 C -0.17 -3.09 10.11 22.36 0.23 -2.86 16 23 C 0.07 1.90 11.18 84.67 0.95 2.84 16 24 N -0.51 -18.22 9.62 -183.88 -1.77 -19.99 16 25 C 0.04 0.96 6.31 44.99 0.28 1.25 16 26 C -0.16 -2.26 9.04 30.60 0.28 -1.98 16 27 C -0.18 -3.14 10.36 30.59 0.32 -2.82 16 28 H 0.04 1.83 6.66 -2.38 -0.02 1.82 16 29 H 0.07 3.39 6.07 -2.39 -0.01 3.38 16 30 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 32 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.08 2.76 6.43 -2.39 -0.02 2.75 16 34 H 0.08 2.34 7.79 -2.39 -0.02 2.33 16 35 H 0.07 2.56 7.66 -2.39 -0.02 2.54 16 36 H 0.13 2.71 6.27 -2.39 -0.01 2.70 16 37 H 0.17 2.05 5.47 -2.91 -0.02 2.03 16 38 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16 39 H 0.17 1.86 8.06 -2.91 -0.02 1.83 16 40 H 0.16 3.89 8.06 -2.91 -0.02 3.86 16 41 H 0.13 3.18 7.49 -2.39 -0.02 3.17 16 42 H 0.11 1.39 3.77 -2.39 -0.01 1.38 16 43 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.12 1.62 8.14 -2.39 -0.02 1.61 16 45 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -79.41 373.11 -0.18 -79.59 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: 1.00 Total: 18.59 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: 5.83 Total: -13.80 kcal Atomic # 7 Polarization: -144.91 SS G_CDS: -4.72 Total: -149.63 kcal Atomic # 8 Polarization: -97.20 SS G_CDS: -3.98 Total: -101.18 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 16 Polarization: 120.18 SS G_CDS: -0.34 Total: 119.85 kcal Total: -79.41 -0.18 -79.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282998345.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.001 kcal (2) G-P(sol) polarization free energy of solvation -79.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds