Wall clock time and date at job start Sat Apr 11 2020 05:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47368 * 2 1 4 4 C 1.50700 * 109.47106 * 240.00482 * 2 1 3 5 5 H 1.07999 * 120.00552 * 239.99578 * 4 2 1 6 6 C 1.37879 * 119.99967 * 60.00074 * 4 2 1 7 7 N 1.31518 * 119.99752 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00084 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47147 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46855 * 119.99905 * 8 6 4 11 11 H 1.48498 * 109.47151 * 239.99620 * 8 6 4 12 12 N 1.46502 * 109.47349 * 120.00625 * 2 1 3 13 13 C 1.46499 * 120.00062 * 60.00143 * 12 2 1 14 14 S 1.65606 * 119.99935 * 239.99645 * 12 2 1 15 15 O 1.42098 * 106.40010 * 23.54321 * 14 12 2 16 16 O 1.42094 * 106.39890 * 156.45686 * 14 12 2 17 17 N 1.65596 * 107.21969 * 270.00204 * 14 12 2 18 18 C 1.47419 * 125.64912 * 90.02885 * 17 14 12 19 19 C 1.54912 * 104.83017 * 204.09088 * 18 17 14 20 20 C 1.55156 * 101.58126 * 322.98716 * 19 18 17 21 21 C 1.47026 * 125.64642 * 269.71644 * 17 14 12 22 22 H 1.08991 * 109.88187 * 59.55870 * 21 17 14 23 23 C 1.50703 * 109.87976 * 298.39370 * 21 17 14 24 24 C 1.38674 * 120.41288 * 140.00125 * 23 21 17 25 25 C 1.38628 * 118.41615 * 180.02562 * 24 23 21 26 26 C 1.38226 * 119.16323 * 359.97438 * 25 24 23 27 27 N 1.31856 * 120.76301 * 0.02562 * 26 25 24 28 28 C 1.31882 * 121.72360 * 359.70163 * 27 26 25 29 29 H 1.09000 * 109.47154 * 299.98961 * 1 2 3 30 30 H 1.08998 * 109.47159 * 59.99687 * 1 2 3 31 31 H 1.09003 * 109.46919 * 179.97438 * 1 2 3 32 32 H 0.97008 * 119.99487 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.47391 * 89.99876 * 13 12 2 34 34 H 1.09001 * 109.46813 * 329.99933 * 13 12 2 35 35 H 1.09004 * 109.47041 * 210.00060 * 13 12 2 36 36 H 1.09004 * 110.36501 * 322.91994 * 18 17 14 37 37 H 1.08998 * 110.37262 * 85.24649 * 18 17 14 38 38 H 1.08999 * 111.00669 * 81.06292 * 19 18 17 39 39 H 1.09007 * 111.00239 * 204.91430 * 19 18 17 40 40 H 1.08998 * 110.71955 * 153.86560 * 20 19 18 41 41 H 1.09006 * 110.72012 * 276.96273 * 20 19 18 42 42 H 1.07994 * 120.79306 * 359.97438 * 24 23 21 43 43 H 1.08003 * 120.41761 * 180.02562 * 25 24 23 44 44 H 1.08004 * 119.61627 * 180.02562 * 26 25 24 45 45 H 1.08005 * 119.61586 * 180.30679 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9427 0.8299 -2.6033 8 14 2.3224 -1.1191 -4.0081 9 1 3.1473 -2.2859 -3.6041 10 1 1.1676 -1.5861 -4.8167 11 1 3.1471 -0.1853 -4.8161 12 7 2.0183 -0.6907 1.1961 13 6 1.6645 -2.0933 1.4278 14 16 2.9705 0.1140 2.2862 15 8 2.6904 1.4970 2.1194 16 8 2.8229 -0.5649 3.5257 17 7 4.5438 -0.1044 1.8179 18 6 5.2968 0.7710 0.9013 19 6 6.4089 -0.1333 0.3136 20 6 6.7786 -1.0091 1.5398 21 6 5.4230 -1.1997 2.2524 22 1 4.9888 -2.1583 1.9688 23 6 5.6136 -1.1420 3.7462 24 6 5.6302 -2.3075 4.4974 25 6 5.8078 -2.2063 5.8685 26 6 5.9619 -0.9559 6.4372 27 7 5.9409 0.1314 5.6915 28 6 5.7794 0.0726 4.3840 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 0.7080 1.1612 -3.4843 33 1 2.4158 -2.7378 0.9713 34 1 0.6905 -2.3003 0.9844 35 1 1.6239 -2.2855 2.5000 36 1 4.6465 1.1373 0.1068 37 1 5.7357 1.6053 1.4484 38 1 6.0243 -0.7455 -0.5021 39 1 7.2624 0.4602 -0.0143 40 1 7.1869 -1.9677 1.2199 41 1 7.4838 -0.4879 2.1874 42 1 5.5068 -3.2711 4.0256 43 1 5.8264 -3.0932 6.4845 44 1 6.1012 -0.8685 7.5046 45 1 5.7724 0.9846 3.8054 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330402967.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:33 Heat of formation + Delta-G solvation = -29.952583 kcal Electronic energy + Delta-G solvation = -29435.820555 eV Core-core repulsion = 25580.364799 eV Total energy + Delta-G solvation = -3855.455756 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.35763 -38.14735 -36.70765 -36.16456 -35.24786 -32.77127 -32.63106 -31.56176 -30.73227 -29.09998 -28.02002 -25.60030 -25.17093 -23.64084 -23.43615 -21.72970 -20.98271 -20.67231 -18.50518 -17.43564 -17.18163 -16.82999 -16.42768 -16.27067 -15.56149 -15.30228 -14.89782 -14.50300 -14.02397 -13.81088 -13.69725 -13.37195 -13.13898 -13.11530 -13.01499 -12.84069 -12.48883 -12.25646 -11.96588 -11.79286 -11.55775 -11.38973 -11.35741 -11.23259 -11.17509 -11.04329 -10.98134 -10.86783 -10.72075 -10.46914 -10.29464 -10.07458 -9.73113 -9.48960 -9.30888 -9.01685 -8.67393 -8.52437 -7.97945 -6.12826 -4.21446 1.07042 1.22328 1.35407 3.19930 3.28799 3.30443 3.44066 3.83714 4.08592 4.31717 4.40077 4.49475 4.70167 4.74103 4.85621 5.01870 5.03846 5.12325 5.14451 5.17593 5.39739 5.55991 5.60876 5.66122 5.73051 5.77806 5.93087 5.95500 5.96445 6.11966 6.14169 6.20194 6.28381 6.32258 6.48221 6.54418 6.66317 6.74814 6.81063 6.87581 7.07412 7.46708 7.60124 7.74447 8.01013 8.02638 8.22766 8.82328 9.45139 10.92187 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017030 B = 0.004427 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.774654 B = 6323.517598 C = 6943.111349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.267 3.733 3 H 0.057 0.943 4 C -0.523 4.523 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.895 3.105 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.989 5.989 13 C 0.101 3.899 14 S 2.789 3.211 15 O -0.976 6.976 16 O -0.986 6.986 17 N -1.012 6.012 18 C 0.121 3.879 19 C -0.128 4.128 20 C -0.117 4.117 21 C 0.199 3.801 22 H 0.083 0.917 23 C -0.134 4.134 24 C -0.060 4.060 25 C -0.171 4.171 26 C 0.091 3.909 27 N -0.483 5.483 28 C 0.112 3.888 29 H 0.012 0.988 30 H 0.094 0.906 31 H 0.033 0.967 32 H 0.263 0.737 33 H 0.041 0.959 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.133 0.867 43 H 0.133 0.867 44 H 0.152 0.848 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.470 -6.691 9.481 16.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.164 3.836 3 H 0.075 0.925 4 C -0.562 4.562 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.831 5.831 13 C -0.046 4.046 14 S 2.800 3.200 15 O -0.960 6.960 16 O -0.970 6.970 17 N -0.848 5.848 18 C -0.004 4.004 19 C -0.167 4.167 20 C -0.156 4.156 21 C 0.091 3.909 22 H 0.101 0.899 23 C -0.138 4.138 24 C -0.086 4.086 25 C -0.191 4.191 26 C -0.066 4.066 27 N -0.192 5.192 28 C -0.046 4.046 29 H 0.031 0.969 30 H 0.112 0.888 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.106 0.894 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.151 0.849 43 H 0.151 0.849 44 H 0.169 0.831 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 11.078 -5.219 10.524 16.147 hybrid contribution 0.112 -1.592 -1.677 2.315 sum 11.190 -6.811 8.847 15.807 Atomic orbital electron populations 1.22072 0.98045 0.99626 1.00848 1.18740 0.91862 0.92641 0.80388 0.92516 1.21397 1.31766 1.13014 0.90048 0.91924 1.24930 0.94985 0.94958 0.98968 1.69896 1.36239 1.22650 1.23706 0.86494 0.78658 0.79582 0.82937 1.19842 1.21029 1.20952 1.57771 1.63955 1.21445 1.39941 1.21238 1.01748 0.81846 0.99737 1.01668 0.71706 0.73520 0.73122 1.93587 1.83411 1.32150 1.86837 1.93547 1.85596 1.76215 1.41686 1.59374 1.28753 1.36172 1.60547 1.21979 0.93888 0.92195 0.92352 1.22788 0.98208 0.98160 0.97500 1.22674 0.94929 1.01094 0.96928 1.20021 0.91636 0.91049 0.88221 0.89861 1.21186 1.00686 0.94778 0.97122 1.21357 0.95270 0.98212 0.93803 1.22054 1.02179 0.99276 0.95568 1.22710 0.95849 0.88104 0.99934 1.67664 1.12255 1.32636 1.06601 1.22496 0.94527 0.97191 0.90345 0.96885 0.88786 0.94805 0.92682 0.94018 0.90640 0.92179 0.89355 0.91920 0.89857 0.90167 0.90105 0.90711 0.84891 0.84947 0.83073 0.83409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 8.95 37.16 0.33 -3.15 16 2 C 0.27 6.46 2.62 -69.08 -0.18 6.28 16 3 H 0.06 1.53 6.91 -51.93 -0.36 1.17 16 4 C -0.52 -13.07 8.37 -34.44 -0.29 -13.36 16 5 H 0.06 1.53 7.65 -52.49 -0.40 1.13 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -23.91 11.32 55.43 0.63 -23.28 16 8 Si 0.90 19.86 29.54 -169.99 -5.02 14.84 16 9 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 N -0.99 -20.59 3.12 -115.85 -0.36 -20.95 16 13 C 0.10 1.80 9.90 59.85 0.59 2.39 16 14 S 2.79 56.19 6.31 -107.50 -0.68 55.51 16 15 O -0.98 -22.88 16.29 -57.18 -0.93 -23.81 16 16 O -0.99 -20.41 14.90 -57.18 -0.85 -21.26 16 17 N -1.01 -16.40 2.76 -105.63 -0.29 -16.69 16 18 C 0.12 1.77 6.98 -2.53 -0.02 1.75 16 19 C -0.13 -1.45 7.09 -24.58 -0.17 -1.63 16 20 C -0.12 -1.21 6.46 -24.89 -0.16 -1.38 16 21 C 0.20 2.62 3.27 -68.10 -0.22 2.40 16 22 H 0.08 1.04 8.05 -51.93 -0.42 0.63 16 23 C -0.13 -1.85 3.40 -104.48 -0.36 -2.21 16 24 C -0.06 -0.72 9.83 -39.28 -0.39 -1.10 16 25 C -0.17 -1.89 10.11 -39.44 -0.40 -2.29 16 26 C 0.09 1.13 11.18 -17.55 -0.20 0.94 16 27 N -0.48 -7.41 10.36 -13.25 -0.14 -7.54 16 28 C 0.11 1.70 10.23 -17.55 -0.18 1.52 16 29 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 31 H 0.03 0.75 6.66 -51.93 -0.35 0.40 16 32 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 1.34 6.43 -51.93 -0.33 1.01 16 35 H 0.06 0.99 7.02 -51.93 -0.36 0.62 16 36 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.08 0.75 8.14 -51.92 -0.42 0.32 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.73 7.77 -51.93 -0.40 0.32 16 42 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 43 H 0.13 1.04 8.06 -52.48 -0.42 0.61 16 44 H 0.15 1.40 8.06 -52.48 -0.42 0.98 16 45 H 0.15 2.20 7.75 -52.48 -0.41 1.80 16 LS Contribution 373.41 15.07 5.63 5.63 Total: -1.00 -32.01 373.41 -10.46 -42.47 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -6.71 Total: 3.39 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -1.73 Total: -8.30 kcal Atomic # 7 Polarization: -68.31 SS G_CDS: -0.16 Total: -68.47 kcal Atomic # 8 Polarization: -43.29 SS G_CDS: -1.78 Total: -45.07 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Atomic # 16 Polarization: 56.19 SS G_CDS: -0.68 Total: 55.51 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.01 -10.46 -42.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330402967.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.521 kcal (2) G-P(sol) polarization free energy of solvation -32.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds