Wall clock time and date at job start Sat Apr 11 2020 05:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47368 * 2 1 4 4 C 1.50700 * 109.47106 * 240.00482 * 2 1 3 5 5 H 1.07999 * 120.00552 * 239.99578 * 4 2 1 6 6 C 1.37879 * 119.99967 * 60.00074 * 4 2 1 7 7 N 1.31518 * 119.99752 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00084 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47147 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46855 * 119.99905 * 8 6 4 11 11 H 1.48498 * 109.47151 * 239.99620 * 8 6 4 12 12 N 1.46502 * 109.47349 * 120.00625 * 2 1 3 13 13 C 1.46499 * 120.00062 * 60.00143 * 12 2 1 14 14 S 1.65606 * 119.99935 * 239.99645 * 12 2 1 15 15 O 1.42098 * 106.40010 * 23.54321 * 14 12 2 16 16 O 1.42094 * 106.39890 * 156.45686 * 14 12 2 17 17 N 1.65596 * 107.21969 * 270.00204 * 14 12 2 18 18 C 1.47419 * 125.64912 * 90.02885 * 17 14 12 19 19 C 1.54912 * 104.83017 * 204.09088 * 18 17 14 20 20 C 1.55156 * 101.58126 * 322.98716 * 19 18 17 21 21 C 1.47026 * 125.64642 * 269.71644 * 17 14 12 22 22 H 1.08991 * 109.88187 * 59.55870 * 21 17 14 23 23 C 1.50703 * 109.87976 * 298.39370 * 21 17 14 24 24 C 1.38674 * 120.41288 * 140.00125 * 23 21 17 25 25 C 1.38628 * 118.41615 * 180.02562 * 24 23 21 26 26 C 1.38226 * 119.16323 * 359.97438 * 25 24 23 27 27 N 1.31856 * 120.76301 * 0.02562 * 26 25 24 28 28 C 1.31882 * 121.72360 * 359.70163 * 27 26 25 29 29 H 1.09000 * 109.47154 * 299.98961 * 1 2 3 30 30 H 1.08998 * 109.47159 * 59.99687 * 1 2 3 31 31 H 1.09003 * 109.46919 * 179.97438 * 1 2 3 32 32 H 0.97008 * 119.99487 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.47391 * 89.99876 * 13 12 2 34 34 H 1.09001 * 109.46813 * 329.99933 * 13 12 2 35 35 H 1.09004 * 109.47041 * 210.00060 * 13 12 2 36 36 H 1.09004 * 110.36501 * 322.91994 * 18 17 14 37 37 H 1.08998 * 110.37262 * 85.24649 * 18 17 14 38 38 H 1.08999 * 111.00669 * 81.06292 * 19 18 17 39 39 H 1.09007 * 111.00239 * 204.91430 * 19 18 17 40 40 H 1.08998 * 110.71955 * 153.86560 * 20 19 18 41 41 H 1.09006 * 110.72012 * 276.96273 * 20 19 18 42 42 H 1.07994 * 120.79306 * 359.97438 * 24 23 21 43 43 H 1.08003 * 120.41761 * 180.02562 * 25 24 23 44 44 H 1.08004 * 119.61627 * 180.02562 * 26 25 24 45 45 H 1.08005 * 119.61586 * 180.30679 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9427 0.8299 -2.6033 8 14 2.3224 -1.1191 -4.0081 9 1 3.1473 -2.2859 -3.6041 10 1 1.1676 -1.5861 -4.8167 11 1 3.1471 -0.1853 -4.8161 12 7 2.0183 -0.6907 1.1961 13 6 1.6645 -2.0933 1.4278 14 16 2.9705 0.1140 2.2862 15 8 2.6904 1.4970 2.1194 16 8 2.8229 -0.5649 3.5257 17 7 4.5438 -0.1044 1.8179 18 6 5.2968 0.7710 0.9013 19 6 6.4089 -0.1333 0.3136 20 6 6.7786 -1.0091 1.5398 21 6 5.4230 -1.1997 2.2524 22 1 4.9888 -2.1583 1.9688 23 6 5.6136 -1.1420 3.7462 24 6 5.6302 -2.3075 4.4974 25 6 5.8078 -2.2063 5.8685 26 6 5.9619 -0.9559 6.4372 27 7 5.9409 0.1314 5.6915 28 6 5.7794 0.0726 4.3840 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 0.7080 1.1612 -3.4843 33 1 2.4158 -2.7378 0.9713 34 1 0.6905 -2.3003 0.9844 35 1 1.6239 -2.2855 2.5000 36 1 4.6465 1.1373 0.1068 37 1 5.7357 1.6053 1.4484 38 1 6.0243 -0.7455 -0.5021 39 1 7.2624 0.4602 -0.0143 40 1 7.1869 -1.9677 1.2199 41 1 7.4838 -0.4879 2.1874 42 1 5.5068 -3.2711 4.0256 43 1 5.8264 -3.0932 6.4845 44 1 6.1012 -0.8685 7.5046 45 1 5.7724 0.9846 3.8054 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330402967.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:32 Heat of formation + Delta-G solvation = -50.992512 kcal Electronic energy + Delta-G solvation = -29436.732915 eV Core-core repulsion = 25580.364799 eV Total energy + Delta-G solvation = -3856.368116 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.34019 -39.20110 -38.39161 -37.91424 -36.93750 -34.51263 -33.76513 -32.50801 -31.83482 -30.94189 -29.03896 -27.33316 -26.98904 -24.64326 -24.42635 -22.90231 -22.42979 -21.97238 -19.90126 -18.89650 -18.56572 -18.35142 -17.95153 -17.45475 -17.01545 -16.49106 -16.38475 -15.80513 -15.33487 -15.12025 -14.92260 -14.73116 -14.58452 -14.50600 -14.14618 -13.91837 -13.72799 -13.53256 -13.44635 -13.30534 -13.22114 -13.14046 -12.93615 -12.78469 -12.68936 -12.63941 -12.25399 -12.18988 -12.14301 -11.99641 -11.88822 -11.61596 -11.18389 -10.68181 -10.51337 -10.48720 -10.11683 -9.80902 -9.63822 -8.08168 -6.23532 -0.41302 0.19593 0.40581 1.45775 1.48654 1.58772 1.96885 2.46156 2.52747 2.88917 3.19585 3.20518 3.47931 3.68212 3.71423 3.87816 4.03331 4.08350 4.10383 4.18171 4.24589 4.45445 4.58918 4.67090 4.69004 4.75441 4.77340 4.87905 4.90290 4.93908 4.97269 5.01124 5.04380 5.12605 5.13706 5.15935 5.22446 5.31870 5.45303 5.48133 5.60987 5.73439 5.82689 5.85542 6.08386 6.28248 6.85846 7.05014 7.46587 8.96862 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017030 B = 0.004427 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.774654 B = 6323.517598 C = 6943.111349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.273 3.727 3 H 0.019 0.981 4 C -0.523 4.523 5 H 0.070 0.930 6 C 0.016 3.984 7 N -0.920 5.920 8 Si 0.960 3.040 9 H -0.260 1.260 10 H -0.286 1.286 11 H -0.284 1.284 12 N -0.996 5.996 13 C 0.096 3.904 14 S 2.801 3.199 15 O -1.020 7.020 16 O -0.994 6.994 17 N -1.010 6.010 18 C 0.112 3.888 19 C -0.118 4.118 20 C -0.104 4.104 21 C 0.190 3.810 22 H 0.095 0.905 23 C -0.143 4.143 24 C -0.066 4.066 25 C -0.163 4.163 26 C 0.077 3.923 27 N -0.516 5.516 28 C 0.084 3.916 29 H 0.014 0.986 30 H 0.071 0.929 31 H 0.047 0.953 32 H 0.263 0.737 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.056 0.944 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.105 0.895 40 H 0.110 0.890 41 H 0.082 0.918 42 H 0.163 0.837 43 H 0.171 0.829 44 H 0.179 0.821 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.436 -9.872 9.757 19.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.169 3.831 3 H 0.037 0.963 4 C -0.562 4.562 5 H 0.088 0.912 6 C -0.183 4.183 7 N -0.560 5.560 8 Si 0.786 3.214 9 H -0.184 1.184 10 H -0.212 1.212 11 H -0.210 1.210 12 N -0.838 5.838 13 C -0.049 4.049 14 S 2.813 3.187 15 O -1.004 7.004 16 O -0.978 6.978 17 N -0.850 5.850 18 C -0.013 4.013 19 C -0.157 4.157 20 C -0.143 4.143 21 C 0.084 3.916 22 H 0.113 0.887 23 C -0.147 4.147 24 C -0.093 4.093 25 C -0.182 4.182 26 C -0.080 4.080 27 N -0.225 5.225 28 C -0.073 4.073 29 H 0.034 0.966 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.124 0.876 40 H 0.128 0.872 41 H 0.101 0.899 42 H 0.181 0.819 43 H 0.188 0.812 44 H 0.196 0.804 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 13.041 -8.420 10.818 18.921 hybrid contribution -0.471 -0.603 -1.637 1.807 sum 12.571 -9.023 9.182 17.993 Atomic orbital electron populations 1.21974 0.98089 1.00156 0.99867 1.18403 0.91829 0.91189 0.81722 0.96322 1.21587 1.31414 1.12924 0.90297 0.91187 1.25708 0.95171 0.95552 1.01893 1.70039 1.37528 1.24144 1.24246 0.85477 0.78015 0.78732 0.79188 1.18377 1.21218 1.21011 1.57676 1.64845 1.22589 1.38688 1.21430 1.02270 0.80324 1.00887 1.01022 0.72424 0.72432 0.72863 1.93522 1.84610 1.34927 1.87343 1.93520 1.86226 1.76036 1.41983 1.59027 1.27669 1.37517 1.60767 1.22149 0.94270 0.93316 0.91596 1.22761 0.97546 0.97788 0.97568 1.22677 0.93394 1.02366 0.95872 1.20381 0.92540 0.90231 0.88475 0.88663 1.21257 1.01076 0.94971 0.97380 1.21806 0.94374 0.98773 0.94314 1.22492 1.00001 1.00015 0.95698 1.23289 0.95376 0.88190 1.01147 1.67613 1.13468 1.34485 1.06929 1.22445 0.96500 0.97585 0.90726 0.96642 0.90997 0.93398 0.92791 0.92129 0.90790 0.90764 0.92508 0.91011 0.90525 0.87626 0.87198 0.89939 0.81917 0.81176 0.80438 0.84792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.89 8.95 71.98 0.64 -6.24 16 2 C 0.27 13.54 2.62 44.24 0.12 13.66 16 3 H 0.02 1.08 6.91 -2.39 -0.02 1.06 16 4 C -0.52 -26.13 8.37 25.60 0.21 -25.92 16 5 H 0.07 3.33 7.65 -2.91 -0.02 3.31 16 6 C 0.02 0.83 5.30 84.65 0.45 1.28 16 7 N -0.92 -50.76 11.32 21.45 0.24 -50.52 16 8 Si 0.96 40.32 29.54 68.60 2.03 42.34 16 9 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 10 H -0.29 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 12 N -1.00 -41.64 3.12 -520.44 -1.62 -43.26 16 13 C 0.10 3.28 9.90 127.77 1.27 4.55 16 14 S 2.80 115.02 6.31 -56.49 -0.36 114.66 16 15 O -1.02 -50.44 16.29 -128.00 -2.08 -52.53 16 16 O -0.99 -40.96 14.90 -128.00 -1.91 -42.87 16 17 N -1.01 -32.65 2.76 -488.11 -1.35 -34.00 16 18 C 0.11 3.30 6.98 86.86 0.61 3.91 16 19 C -0.12 -2.45 7.09 31.99 0.23 -2.23 16 20 C -0.10 -1.85 6.46 31.78 0.21 -1.64 16 21 C 0.19 4.65 3.27 44.60 0.15 4.80 16 22 H 0.10 2.09 8.05 -2.39 -0.02 2.07 16 23 C -0.14 -3.71 3.40 -19.77 -0.07 -3.77 16 24 C -0.07 -1.38 9.83 22.47 0.22 -1.16 16 25 C -0.16 -3.06 10.11 22.36 0.23 -2.83 16 26 C 0.08 1.76 11.18 84.69 0.95 2.71 16 27 N -0.52 -15.64 10.36 -195.84 -2.03 -17.67 16 28 C 0.08 2.55 10.23 84.67 0.87 3.42 16 29 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 3.83 6.07 -2.39 -0.01 3.82 16 31 H 0.05 2.13 6.66 -2.39 -0.02 2.12 16 32 H 0.26 13.81 8.31 -92.70 -0.77 13.04 16 33 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.07 2.53 6.43 -2.39 -0.02 2.51 16 35 H 0.07 2.31 7.02 -2.38 -0.02 2.29 16 36 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 37 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.11 1.68 8.14 -2.38 -0.02 1.67 16 40 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.08 1.38 7.77 -2.38 -0.02 1.36 16 42 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 43 H 0.17 1.83 8.06 -2.91 -0.02 1.81 16 44 H 0.18 2.86 8.06 -2.91 -0.02 2.84 16 45 H 0.13 4.20 7.75 -2.91 -0.02 4.18 16 Total: -1.00 -71.51 373.41 -0.03 -71.54 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: 0.98 Total: 21.76 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: 6.07 Total: -9.46 kcal Atomic # 7 Polarization: -140.69 SS G_CDS: -4.76 Total: -145.45 kcal Atomic # 8 Polarization: -91.40 SS G_CDS: -3.99 Total: -95.39 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.34 kcal Atomic # 16 Polarization: 115.02 SS G_CDS: -0.36 Total: 114.66 kcal Total: -71.51 -0.03 -71.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330402967.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.547 kcal (2) G-P(sol) polarization free energy of solvation -71.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds