Wall clock time and date at job start Sat Apr 11 2020 05:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47475 * 2 1 4 4 C 1.50703 * 109.46958 * 239.99957 * 2 1 3 5 5 H 1.07999 * 119.99700 * 246.20938 * 4 2 1 6 6 C 1.37873 * 119.99839 * 66.21481 * 4 2 1 7 7 N 1.31516 * 120.00185 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99832 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47165 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47454 * 119.99675 * 8 6 4 11 11 H 1.48507 * 109.46727 * 239.99452 * 8 6 4 12 12 N 1.46503 * 109.47580 * 120.00004 * 2 1 3 13 13 C 1.46502 * 119.99774 * 59.45973 * 12 2 1 14 14 S 1.65596 * 120.00036 * 239.46569 * 12 2 1 15 15 O 1.42103 * 106.40235 * 161.84531 * 14 12 2 16 16 O 1.42100 * 106.40472 * 28.92228 * 14 12 2 17 17 N 1.65606 * 107.21807 * 275.38408 * 14 12 2 18 18 C 1.46501 * 119.99700 * 300.25813 * 17 14 12 19 19 H 1.08996 * 109.47479 * 3.06749 * 18 17 14 20 20 C 1.50699 * 109.47113 * 123.06649 * 18 17 14 21 21 C 1.38666 * 120.41929 * 220.26062 * 20 18 17 22 22 C 1.38634 * 118.41849 * 180.22077 * 21 20 18 23 23 C 1.38228 * 119.16103 * 359.47934 * 22 21 20 24 24 N 1.31852 * 120.76236 * 0.29936 * 23 22 21 25 25 C 1.31878 * 121.72926 * 359.97438 * 24 23 22 26 26 C 1.53004 * 109.47158 * 243.06541 * 18 17 14 27 27 C 1.52993 * 117.49850 * 135.40584 * 26 18 17 28 28 C 1.52998 * 117.49437 * 66.74805 * 26 18 17 29 29 H 1.09007 * 109.46963 * 299.99845 * 1 2 3 30 30 H 1.08997 * 109.47543 * 60.00051 * 1 2 3 31 31 H 1.09001 * 109.47032 * 180.02562 * 1 2 3 32 32 H 0.97000 * 119.99705 * 180.02562 * 7 6 4 33 33 H 1.09006 * 109.47079 * 270.00215 * 13 12 2 34 34 H 1.08994 * 109.47351 * 30.00068 * 13 12 2 35 35 H 1.08998 * 109.46651 * 150.00521 * 13 12 2 36 36 H 0.96995 * 119.99935 * 120.25417 * 17 14 12 37 37 H 1.07992 * 120.79389 * 359.97438 * 21 20 18 38 38 H 1.08004 * 120.42093 * 179.74820 * 22 21 20 39 39 H 1.08000 * 119.61766 * 180.27791 * 23 22 21 40 40 H 1.07998 * 119.62070 * 180.02562 * 25 24 23 41 41 H 1.09000 * 115.54748 * 281.08400 * 26 18 17 42 42 H 1.08999 * 117.49862 * 0.02562 * 27 26 18 43 43 H 1.08999 * 117.49912 * 145.02236 * 27 26 18 44 44 H 1.09011 * 117.49787 * 214.98090 * 28 26 18 45 45 H 1.08996 * 117.50627 * 359.97438 * 28 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.5679 -1.6433 -1.1345 6 6 1.8080 -0.1694 -2.4787 7 7 1.1553 0.9663 -2.5955 8 14 2.4300 -1.0504 -4.0040 9 1 3.1275 -2.2992 -3.6045 10 1 1.2825 -1.3842 -4.8854 11 1 3.3750 -0.1679 -4.7344 12 7 2.0184 -0.6906 1.1962 13 6 1.6548 -2.0897 1.4340 14 16 2.9814 0.1103 2.2794 15 8 2.9336 -0.6365 3.4874 16 8 2.6206 1.4824 2.1991 17 7 4.5380 0.0028 1.7245 18 6 5.1607 -1.3103 1.5397 19 1 4.4347 -2.0916 1.7644 20 6 5.6236 -1.4504 0.1124 21 6 5.4654 -2.6514 -0.5624 22 6 5.9104 -2.7355 -1.8727 23 6 6.4830 -1.6241 -2.4622 24 7 6.6132 -0.4965 -1.7913 25 6 6.2063 -0.3818 -0.5421 26 6 6.3601 -1.4429 2.4803 27 6 6.5139 -2.7572 3.2481 28 6 6.0776 -1.4875 3.9833 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 0.9972 1.3467 -3.4737 33 1 0.7301 -2.1320 2.0096 34 1 1.5117 -2.5953 0.4790 35 1 2.4519 -2.5827 1.9903 36 1 5.0373 0.8093 1.5218 37 1 5.0100 -3.5021 -0.0775 38 1 5.8070 -3.6565 -2.4272 39 1 6.8281 -1.6801 -3.4841 40 1 6.3293 0.5582 -0.0249 41 1 7.2710 -0.9410 2.1540 42 1 5.7607 -3.5277 3.0829 43 1 7.5260 -3.1200 3.4274 44 1 6.8030 -1.0153 4.6460 45 1 5.0374 -1.4220 4.3021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331387217.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:42 Heat of formation + Delta-G solvation = -13.182234 kcal Electronic energy + Delta-G solvation = -29709.553819 eV Core-core repulsion = 25854.825280 eV Total energy + Delta-G solvation = -3854.728539 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -40.11740 -37.91651 -36.64654 -36.18552 -35.29280 -34.36869 -32.59487 -32.17970 -30.73963 -29.18773 -26.34123 -25.56711 -25.17543 -23.42511 -22.45686 -22.20679 -20.87625 -20.50365 -18.94201 -17.40251 -17.04197 -16.76938 -16.52288 -16.01930 -15.88711 -15.64278 -15.15508 -14.51631 -14.41883 -13.97585 -13.50070 -13.41910 -13.27501 -12.96422 -12.83686 -12.69934 -12.19574 -12.00719 -11.86156 -11.78496 -11.67646 -11.42834 -11.40494 -11.29484 -11.22046 -11.03884 -10.87787 -10.49605 -10.41280 -10.31714 -10.20752 -10.10519 -9.60446 -9.43599 -9.25187 -9.10331 -8.71416 -8.50736 -8.01206 -6.11628 -4.18106 1.16632 1.37813 1.56751 3.22057 3.28609 3.31511 3.36518 3.81752 4.05810 4.14593 4.34789 4.45612 4.77191 4.84206 4.89086 4.92110 5.04034 5.12044 5.13530 5.21652 5.27738 5.35910 5.41559 5.59567 5.64311 5.71194 5.90696 5.94675 6.02692 6.07333 6.10438 6.25479 6.29527 6.35127 6.50053 6.58294 6.79600 6.81500 6.93025 7.06218 7.17796 7.44797 7.58283 7.74562 7.96550 8.22131 8.23908 8.84632 9.48313 10.95162 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009900 B = 0.007226 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2827.725217 B = 3874.034088 C = 5780.347849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.271 3.729 3 H 0.059 0.941 4 C -0.519 4.519 5 H 0.062 0.938 6 C 0.068 3.932 7 N -0.886 5.886 8 Si 0.885 3.115 9 H -0.270 1.270 10 H -0.285 1.285 11 H -0.283 1.283 12 N -0.989 5.989 13 C 0.105 3.895 14 S 2.781 3.219 15 O -0.996 6.996 16 O -0.981 6.981 17 N -1.118 6.118 18 C 0.241 3.759 19 H 0.093 0.907 20 C -0.129 4.129 21 C -0.057 4.057 22 C -0.168 4.168 23 C 0.095 3.905 24 N -0.481 5.481 25 C 0.121 3.879 26 C -0.163 4.163 27 C -0.173 4.173 28 C -0.176 4.176 29 H 0.014 0.986 30 H 0.082 0.918 31 H 0.033 0.967 32 H 0.263 0.737 33 H 0.044 0.956 34 H 0.079 0.921 35 H 0.048 0.952 36 H 0.412 0.588 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.108 0.892 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.978 -8.457 6.671 14.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.168 3.832 3 H 0.076 0.924 4 C -0.558 4.558 5 H 0.080 0.920 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.713 3.287 9 H -0.195 1.195 10 H -0.212 1.212 11 H -0.209 1.209 12 N -0.832 5.832 13 C -0.042 4.042 14 S 2.790 3.210 15 O -0.979 6.979 16 O -0.965 6.965 17 N -0.874 5.874 18 C 0.132 3.868 19 H 0.111 0.889 20 C -0.132 4.132 21 C -0.083 4.083 22 C -0.188 4.188 23 C -0.062 4.062 24 N -0.189 5.189 25 C -0.036 4.036 26 C -0.183 4.183 27 C -0.211 4.211 28 C -0.213 4.213 29 H 0.033 0.967 30 H 0.100 0.900 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.098 0.902 35 H 0.067 0.933 36 H 0.246 0.754 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.166 0.834 40 H 0.165 0.835 41 H 0.126 0.874 42 H 0.113 0.887 43 H 0.112 0.888 44 H 0.111 0.889 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 9.883 -7.305 6.975 14.131 hybrid contribution 0.151 -1.009 -1.217 1.588 sum 10.034 -8.314 5.758 14.247 Atomic orbital electron populations 1.21998 0.98186 0.99470 1.00297 1.18694 0.91592 0.92753 0.80179 0.92351 1.21308 1.36184 1.08136 0.90191 0.91964 1.24867 0.94959 0.94812 0.98822 1.69917 1.40392 1.18221 1.23901 0.86628 0.78678 0.79974 0.83411 1.19461 1.21161 1.20893 1.57699 1.63881 1.21563 1.40019 1.21230 0.98951 0.82287 1.01733 1.01870 0.72564 0.73225 0.73368 1.93529 1.86656 1.73641 1.44108 1.93603 1.81879 1.33783 1.87211 1.56151 1.33503 1.12561 1.85160 1.18866 0.93434 0.84971 0.89493 0.88884 1.20862 1.00319 0.95221 0.96832 1.21286 0.95820 0.97067 0.94171 1.22015 1.00494 1.00412 0.95880 1.22648 0.95706 0.88415 0.99466 1.67639 1.17446 1.25760 1.08067 1.22333 0.93348 0.97626 0.90333 1.22600 0.99635 1.02474 0.93611 1.22959 1.02550 0.91241 1.04337 1.23149 1.04015 1.00702 0.93479 0.96670 0.89968 0.94768 0.92747 0.93765 0.90228 0.93295 0.75426 0.85183 0.85217 0.83413 0.83504 0.87433 0.88665 0.88830 0.88943 0.86804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 9.02 37.15 0.34 -2.91 16 2 C 0.27 6.41 2.49 -69.08 -0.17 6.23 16 3 H 0.06 1.57 7.05 -51.93 -0.37 1.20 16 4 C -0.52 -12.84 8.03 -34.44 -0.28 -13.12 16 5 H 0.06 1.50 7.15 -52.49 -0.38 1.12 16 6 C 0.07 1.79 5.33 -17.82 -0.09 1.69 16 7 N -0.89 -24.46 11.79 55.43 0.65 -23.81 16 8 Si 0.89 20.44 29.54 -169.99 -5.02 15.42 16 9 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 N -0.99 -19.50 3.12 -115.85 -0.36 -19.86 16 13 C 0.10 1.74 9.18 59.85 0.55 2.29 16 14 S 2.78 52.09 5.87 -107.50 -0.63 51.46 16 15 O -1.00 -18.74 15.52 -57.17 -0.89 -19.62 16 16 O -0.98 -21.97 16.87 -57.17 -0.96 -22.93 16 17 N -1.12 -17.05 5.16 -5.88 -0.03 -17.08 16 18 C 0.24 3.25 2.72 -69.08 -0.19 3.06 16 19 H 0.09 1.25 6.19 -51.93 -0.32 0.92 16 20 C -0.13 -1.87 4.97 -104.48 -0.52 -2.38 16 21 C -0.06 -0.78 9.82 -39.28 -0.39 -1.17 16 22 C -0.17 -2.34 10.11 -39.44 -0.40 -2.73 16 23 C 0.09 1.44 11.18 -17.55 -0.20 1.24 16 24 N -0.48 -8.14 10.36 -13.25 -0.14 -8.28 16 25 C 0.12 1.90 10.48 -17.55 -0.18 1.71 16 26 C -0.16 -1.85 5.28 -90.62 -0.48 -2.33 16 27 C -0.17 -1.73 10.18 -26.70 -0.27 -2.00 16 28 C -0.18 -2.01 10.23 -26.70 -0.27 -2.29 16 29 H 0.01 0.32 8.14 -51.92 -0.42 -0.10 16 30 H 0.08 2.09 6.58 -51.93 -0.34 1.74 16 31 H 0.03 0.73 7.66 -51.93 -0.40 0.33 16 32 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.08 1.34 6.95 -51.93 -0.36 0.98 16 35 H 0.05 0.69 6.38 -51.93 -0.33 0.36 16 36 H 0.41 5.67 7.70 -34.47 -0.27 5.41 16 37 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 38 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 39 H 0.15 1.88 8.06 -52.49 -0.42 1.46 16 40 H 0.15 2.04 6.92 -52.49 -0.36 1.67 16 41 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.09 0.91 8.09 -51.93 -0.42 0.49 16 43 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.09 0.92 8.14 -51.92 -0.42 0.50 16 45 H 0.11 1.55 6.73 -51.93 -0.35 1.20 16 LS Contribution 379.18 15.07 5.71 5.71 Total: -1.00 -31.73 379.18 -10.63 -42.36 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -6.41 Total: 9.33 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -2.55 Total: -12.70 kcal Atomic # 7 Polarization: -69.15 SS G_CDS: 0.12 Total: -69.03 kcal Atomic # 8 Polarization: -40.71 SS G_CDS: -1.85 Total: -42.56 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 52.09 SS G_CDS: -0.63 Total: 51.46 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.73 -10.63 -42.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331387217.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.182 kcal (2) G-P(sol) polarization free energy of solvation -31.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds