Wall clock time and date at job start Sat Apr 11 2020 05:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47475 * 2 1 4 4 C 1.50703 * 109.46958 * 239.99957 * 2 1 3 5 5 H 1.07999 * 119.99700 * 246.20938 * 4 2 1 6 6 C 1.37873 * 119.99839 * 66.21481 * 4 2 1 7 7 N 1.31516 * 120.00185 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99832 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47165 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47454 * 119.99675 * 8 6 4 11 11 H 1.48507 * 109.46727 * 239.99452 * 8 6 4 12 12 N 1.46503 * 109.47580 * 120.00004 * 2 1 3 13 13 C 1.46502 * 119.99774 * 59.45973 * 12 2 1 14 14 S 1.65596 * 120.00036 * 239.46569 * 12 2 1 15 15 O 1.42103 * 106.40235 * 161.84531 * 14 12 2 16 16 O 1.42100 * 106.40472 * 28.92228 * 14 12 2 17 17 N 1.65606 * 107.21807 * 275.38408 * 14 12 2 18 18 C 1.46501 * 119.99700 * 300.25813 * 17 14 12 19 19 H 1.08996 * 109.47479 * 3.06749 * 18 17 14 20 20 C 1.50699 * 109.47113 * 123.06649 * 18 17 14 21 21 C 1.38666 * 120.41929 * 220.26062 * 20 18 17 22 22 C 1.38634 * 118.41849 * 180.22077 * 21 20 18 23 23 C 1.38228 * 119.16103 * 359.47934 * 22 21 20 24 24 N 1.31852 * 120.76236 * 0.29936 * 23 22 21 25 25 C 1.31878 * 121.72926 * 359.97438 * 24 23 22 26 26 C 1.53004 * 109.47158 * 243.06541 * 18 17 14 27 27 C 1.52993 * 117.49850 * 135.40584 * 26 18 17 28 28 C 1.52998 * 117.49437 * 66.74805 * 26 18 17 29 29 H 1.09007 * 109.46963 * 299.99845 * 1 2 3 30 30 H 1.08997 * 109.47543 * 60.00051 * 1 2 3 31 31 H 1.09001 * 109.47032 * 180.02562 * 1 2 3 32 32 H 0.97000 * 119.99705 * 180.02562 * 7 6 4 33 33 H 1.09006 * 109.47079 * 270.00215 * 13 12 2 34 34 H 1.08994 * 109.47351 * 30.00068 * 13 12 2 35 35 H 1.08998 * 109.46651 * 150.00521 * 13 12 2 36 36 H 0.96995 * 119.99935 * 120.25417 * 17 14 12 37 37 H 1.07992 * 120.79389 * 359.97438 * 21 20 18 38 38 H 1.08004 * 120.42093 * 179.74820 * 22 21 20 39 39 H 1.08000 * 119.61766 * 180.27791 * 23 22 21 40 40 H 1.07998 * 119.62070 * 180.02562 * 25 24 23 41 41 H 1.09000 * 115.54748 * 281.08400 * 26 18 17 42 42 H 1.08999 * 117.49862 * 0.02562 * 27 26 18 43 43 H 1.08999 * 117.49912 * 145.02236 * 27 26 18 44 44 H 1.09011 * 117.49787 * 214.98090 * 28 26 18 45 45 H 1.08996 * 117.50627 * 359.97438 * 28 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.5679 -1.6433 -1.1345 6 6 1.8080 -0.1694 -2.4787 7 7 1.1553 0.9663 -2.5955 8 14 2.4300 -1.0504 -4.0040 9 1 3.1275 -2.2992 -3.6045 10 1 1.2825 -1.3842 -4.8854 11 1 3.3750 -0.1679 -4.7344 12 7 2.0184 -0.6906 1.1962 13 6 1.6548 -2.0897 1.4340 14 16 2.9814 0.1103 2.2794 15 8 2.9336 -0.6365 3.4874 16 8 2.6206 1.4824 2.1991 17 7 4.5380 0.0028 1.7245 18 6 5.1607 -1.3103 1.5397 19 1 4.4347 -2.0916 1.7644 20 6 5.6236 -1.4504 0.1124 21 6 5.4654 -2.6514 -0.5624 22 6 5.9104 -2.7355 -1.8727 23 6 6.4830 -1.6241 -2.4622 24 7 6.6132 -0.4965 -1.7913 25 6 6.2063 -0.3818 -0.5421 26 6 6.3601 -1.4429 2.4803 27 6 6.5139 -2.7572 3.2481 28 6 6.0776 -1.4875 3.9833 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 0.9972 1.3467 -3.4737 33 1 0.7301 -2.1320 2.0096 34 1 1.5117 -2.5953 0.4790 35 1 2.4519 -2.5827 1.9903 36 1 5.0373 0.8093 1.5218 37 1 5.0100 -3.5021 -0.0775 38 1 5.8070 -3.6565 -2.4272 39 1 6.8281 -1.6801 -3.4841 40 1 6.3293 0.5582 -0.0249 41 1 7.2710 -0.9410 2.1540 42 1 5.7607 -3.5277 3.0829 43 1 7.5260 -3.1200 3.4274 44 1 6.8030 -1.0153 4.6460 45 1 5.0374 -1.4220 4.3021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331387217.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:41 Heat of formation + Delta-G solvation = -34.318537 kcal Electronic energy + Delta-G solvation = -29710.470358 eV Core-core repulsion = 25854.825280 eV Total energy + Delta-G solvation = -3855.645078 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.20540 -38.93816 -38.20705 -37.86530 -36.88371 -35.44210 -34.47079 -33.29405 -31.87670 -30.98264 -27.46497 -27.18763 -26.97497 -24.52287 -23.43918 -23.07716 -22.63287 -21.53650 -20.38858 -18.83242 -18.44087 -18.28940 -18.07233 -17.34433 -17.02502 -16.79315 -16.72693 -16.05035 -15.44183 -15.21632 -15.00388 -14.84211 -14.57393 -14.44199 -13.96485 -13.87255 -13.73280 -13.45139 -13.41713 -13.20347 -13.14194 -12.97745 -12.83160 -12.79899 -12.66900 -12.52819 -12.24580 -12.20494 -12.16158 -11.89048 -11.30753 -11.17848 -11.10912 -10.69080 -10.54906 -10.51362 -10.24682 -9.82952 -9.63957 -8.09854 -6.20762 -0.30560 0.25993 0.47586 1.39158 1.42856 1.50998 1.96009 2.44432 2.58853 2.94162 3.00439 3.22613 3.41284 3.52784 3.73550 3.84211 3.92599 4.03128 4.11772 4.15078 4.19722 4.29261 4.33497 4.50457 4.65322 4.71098 4.80127 4.88056 4.89909 4.92247 4.96836 5.04027 5.10312 5.14617 5.25534 5.26861 5.30914 5.38489 5.43470 5.60343 5.65649 5.85429 5.86544 6.00475 6.13317 6.28902 6.88881 7.12055 7.48562 8.96734 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009900 B = 0.007226 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2827.725217 B = 3874.034088 C = 5780.347849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.278 3.722 3 H 0.019 0.981 4 C -0.507 4.507 5 H 0.074 0.926 6 C 0.020 3.980 7 N -0.922 5.922 8 Si 0.936 3.064 9 H -0.246 1.246 10 H -0.287 1.287 11 H -0.296 1.296 12 N -0.994 5.994 13 C 0.096 3.904 14 S 2.795 3.205 15 O -0.995 6.995 16 O -1.023 7.023 17 N -1.111 6.111 18 C 0.240 3.760 19 H 0.098 0.902 20 C -0.131 4.131 21 C -0.064 4.064 22 C -0.169 4.169 23 C 0.074 3.926 24 N -0.512 5.512 25 C 0.100 3.900 26 C -0.167 4.167 27 C -0.155 4.155 28 C -0.186 4.186 29 H 0.019 0.981 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.259 0.741 33 H 0.052 0.948 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.418 0.582 37 H 0.158 0.842 38 H 0.158 0.842 39 H 0.165 0.835 40 H 0.151 0.849 41 H 0.114 0.886 42 H 0.103 0.897 43 H 0.113 0.887 44 H 0.105 0.895 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.117 -11.422 7.176 17.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.173 3.827 3 H 0.037 0.963 4 C -0.547 4.547 5 H 0.092 0.908 6 C -0.180 4.180 7 N -0.562 5.562 8 Si 0.763 3.237 9 H -0.169 1.169 10 H -0.214 1.214 11 H -0.223 1.223 12 N -0.836 5.836 13 C -0.050 4.050 14 S 2.805 3.195 15 O -0.978 6.978 16 O -1.007 7.007 17 N -0.870 5.870 18 C 0.132 3.868 19 H 0.116 0.884 20 C -0.135 4.135 21 C -0.090 4.090 22 C -0.188 4.188 23 C -0.082 4.082 24 N -0.221 5.221 25 C -0.057 4.057 26 C -0.188 4.188 27 C -0.193 4.193 28 C -0.224 4.224 29 H 0.038 0.962 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.253 0.747 37 H 0.176 0.824 38 H 0.176 0.824 39 H 0.182 0.818 40 H 0.168 0.832 41 H 0.133 0.867 42 H 0.121 0.879 43 H 0.131 0.869 44 H 0.123 0.877 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 11.025 -10.305 7.504 16.854 hybrid contribution -0.161 -0.108 -1.309 1.323 sum 10.865 -10.413 6.195 16.274 Atomic orbital electron populations 1.21888 0.98071 1.00134 0.99281 1.18312 0.91657 0.91177 0.81512 0.96269 1.21548 1.34889 1.08000 0.90255 0.90834 1.25562 0.95464 0.95402 1.01539 1.70055 1.42202 1.19857 1.24098 0.85812 0.77901 0.79707 0.80303 1.16901 1.21386 1.22264 1.57566 1.64594 1.22804 1.38657 1.21475 1.00569 0.80554 1.02356 1.01265 0.72952 0.72057 0.73245 1.93531 1.86970 1.73334 1.43962 1.93546 1.83000 1.36408 1.87738 1.55885 1.32215 1.13976 1.84938 1.19048 0.94251 0.83757 0.89702 0.88378 1.20949 1.00047 0.95354 0.97113 1.21698 0.95447 0.97570 0.94323 1.22365 0.99392 1.00980 0.96110 1.23083 0.96176 0.88562 1.00408 1.67609 1.18571 1.27080 1.08817 1.22526 0.94216 0.98499 0.90472 1.22523 0.98912 1.04267 0.93052 1.23097 1.03826 0.90494 1.01875 1.23128 1.03172 1.02473 0.93590 0.96160 0.92542 0.93126 0.93179 0.92892 0.90194 0.90466 0.74679 0.82430 0.82403 0.81761 0.83150 0.86750 0.87897 0.86878 0.87694 0.89009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.24 9.02 71.98 0.65 -5.59 16 2 C 0.28 13.17 2.49 44.24 0.11 13.28 16 3 H 0.02 1.08 7.05 -2.39 -0.02 1.06 16 4 C -0.51 -24.67 8.03 25.60 0.21 -24.47 16 5 H 0.07 3.35 7.15 -2.91 -0.02 3.33 16 6 C 0.02 1.02 5.33 84.65 0.45 1.47 16 7 N -0.92 -51.97 11.79 21.45 0.25 -51.72 16 8 Si 0.94 41.30 29.54 68.60 2.03 43.33 16 9 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 10 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 12 N -0.99 -38.12 3.12 -520.44 -1.62 -39.75 16 13 C 0.10 2.94 9.18 127.77 1.17 4.11 16 14 S 2.80 103.26 5.87 -56.49 -0.33 102.93 16 15 O -0.99 -36.02 15.52 -128.00 -1.99 -38.00 16 16 O -1.02 -46.76 16.87 -128.00 -2.16 -48.92 16 17 N -1.11 -33.02 5.16 -172.52 -0.89 -33.91 16 18 C 0.24 5.97 2.72 44.25 0.12 6.09 16 19 H 0.10 2.32 6.19 -2.39 -0.01 2.31 16 20 C -0.13 -3.53 4.97 -19.77 -0.10 -3.63 16 21 C -0.06 -1.56 9.82 22.47 0.22 -1.34 16 22 C -0.17 -4.16 10.11 22.36 0.23 -3.93 16 23 C 0.07 2.12 11.18 84.69 0.95 3.07 16 24 N -0.51 -16.99 10.36 -195.84 -2.03 -19.01 16 25 C 0.10 3.06 10.48 84.67 0.89 3.95 16 26 C -0.17 -3.40 5.28 -10.80 -0.06 -3.45 16 27 C -0.16 -2.56 10.18 30.61 0.31 -2.24 16 28 C -0.19 -3.83 10.23 30.62 0.31 -3.52 16 29 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.06 2.92 6.58 -2.39 -0.02 2.90 16 31 H 0.05 2.12 7.66 -2.39 -0.02 2.11 16 32 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 33 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 34 H 0.08 2.46 6.95 -2.39 -0.02 2.44 16 35 H 0.08 1.92 6.38 -2.39 -0.02 1.90 16 36 H 0.42 11.52 7.70 -96.75 -0.75 10.77 16 37 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 38 H 0.16 2.90 8.06 -2.91 -0.02 2.87 16 39 H 0.17 3.89 8.06 -2.91 -0.02 3.87 16 40 H 0.15 4.21 6.92 -2.91 -0.02 4.19 16 41 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.10 1.55 8.09 -2.39 -0.02 1.54 16 43 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 45 H 0.09 2.34 6.73 -2.39 -0.02 2.32 16 Total: -1.00 -68.58 379.18 -1.02 -69.59 By element: Atomic # 1 Polarization: 31.40 SS G_CDS: 0.26 Total: 31.66 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: 5.46 Total: -16.20 kcal Atomic # 7 Polarization: -140.10 SS G_CDS: -4.29 Total: -144.39 kcal Atomic # 8 Polarization: -82.78 SS G_CDS: -4.15 Total: -86.92 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Atomic # 16 Polarization: 103.26 SS G_CDS: -0.33 Total: 102.93 kcal Total: -68.58 -1.02 -69.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331387217.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.275 kcal (2) G-P(sol) polarization free energy of solvation -68.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds