Wall clock time and date at job start Sat Apr 11 2020 05:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47251 * 2 1 4 4 C 1.50701 * 109.46957 * 240.00166 * 2 1 3 5 5 H 1.08004 * 119.99950 * 239.99997 * 4 2 1 6 6 C 1.37878 * 120.00406 * 60.27548 * 4 2 1 7 7 N 1.31524 * 119.99273 * 359.72493 * 6 4 2 8 8 Si 1.86798 * 120.00508 * 179.72402 * 6 4 2 9 9 H 1.48497 * 109.47046 * 60.00148 * 8 6 4 10 10 H 1.48497 * 109.46921 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47074 * 299.99912 * 8 6 4 12 12 N 1.46500 * 109.47337 * 120.00373 * 2 1 3 13 13 C 1.46503 * 120.00022 * 59.99888 * 12 2 1 14 14 S 1.65607 * 120.00017 * 239.99712 * 12 2 1 15 15 O 1.42096 * 106.40109 * 203.53611 * 14 12 2 16 16 O 1.42098 * 106.40042 * 336.46064 * 14 12 2 17 17 N 1.65599 * 107.21353 * 89.99820 * 14 12 2 18 18 C 1.46497 * 120.00246 * 64.59597 * 17 14 12 19 19 H 1.08999 * 109.47361 * 3.94920 * 18 17 14 20 20 C 1.50699 * 109.47220 * 243.94732 * 18 17 14 21 21 C 1.38679 * 120.41623 * 140.00116 * 20 18 17 22 22 C 1.38625 * 118.41585 * 180.02562 * 21 20 18 23 23 C 1.38227 * 119.16616 * 0.02562 * 22 21 20 24 24 N 1.31853 * 120.75937 * 359.97438 * 23 22 21 25 25 C 1.31883 * 121.72824 * 359.71420 * 24 23 22 26 26 C 1.52999 * 109.47281 * 123.94643 * 18 17 14 27 27 C 1.52998 * 117.50122 * 3.60360 * 26 18 17 28 28 C 1.53004 * 117.50161 * 294.94504 * 26 18 17 29 29 H 1.08992 * 109.46890 * 59.99536 * 1 2 3 30 30 H 1.08998 * 109.47251 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46430 * 299.99641 * 1 2 3 32 32 H 0.97000 * 119.99692 * 180.02562 * 7 6 4 33 33 H 1.08998 * 109.47167 * 90.00715 * 13 12 2 34 34 H 1.09007 * 109.46551 * 210.00269 * 13 12 2 35 35 H 1.08997 * 109.47076 * 330.00119 * 13 12 2 36 36 H 0.97003 * 120.00082 * 244.59292 * 17 14 12 37 37 H 1.08003 * 120.79065 * 359.97438 * 21 20 18 38 38 H 1.08004 * 120.41702 * 180.02562 * 22 21 20 39 39 H 1.07998 * 119.61893 * 179.97438 * 23 22 21 40 40 H 1.08006 * 119.62043 * 180.31211 * 25 24 23 41 41 H 1.08996 * 115.55288 * 149.27296 * 26 18 17 42 42 H 1.09006 * 117.49630 * 0.02562 * 27 26 18 43 43 H 1.08995 * 117.50268 * 145.01723 * 27 26 18 44 44 H 1.08995 * 117.50030 * 214.97824 * 28 26 18 45 45 H 1.09009 * 117.49373 * 359.97438 * 28 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.7039 -0.2361 -2.4828 7 7 0.9478 0.8333 -2.6034 8 14 2.3329 -1.1121 -4.0080 9 1 1.8385 -2.5123 -4.0139 10 1 1.8428 -0.4085 -5.2204 11 1 3.8179 -1.1114 -4.0022 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0933 1.4279 14 16 2.9705 0.1141 2.2862 15 8 3.7119 -0.8791 2.9814 16 8 3.5795 1.1828 1.5748 17 7 1.9608 0.8089 3.3998 18 6 1.1444 -0.0353 4.2756 19 1 1.3861 -1.0833 4.0985 20 6 -0.3149 0.2002 3.9825 21 6 -1.2075 -0.8610 3.9640 22 6 -2.5404 -0.5972 3.6893 23 6 -2.9326 0.7054 3.4442 24 7 -2.0559 1.6899 3.4702 25 6 -0.7814 1.4769 3.7339 26 6 1.4343 0.3150 5.7365 27 6 2.3972 1.4726 6.0078 28 6 2.8415 0.0306 6.2654 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8901 32 1 0.7164 1.1669 -3.4843 33 1 2.4158 -2.7378 0.9716 34 1 1.6239 -2.2853 2.5001 35 1 0.6905 -2.3003 0.9845 36 1 1.9099 1.7749 3.4722 37 1 -0.8719 -1.8691 4.1581 38 1 -3.2632 -1.3993 3.6670 39 1 -3.9692 0.9192 3.2290 40 1 -0.0935 2.3093 3.7513 41 1 0.6009 0.1815 6.4262 42 1 2.8239 1.9849 5.1454 43 1 2.1976 2.1004 6.8761 44 1 2.9339 -0.2896 7.3032 45 1 3.5607 -0.4065 5.5726 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331387219.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:54 Heat of formation + Delta-G solvation = -5.810744 kcal Electronic energy + Delta-G solvation = -29335.950023 eV Core-core repulsion = 25481.541136 eV Total energy + Delta-G solvation = -3854.408887 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.37061 -38.21541 -36.67949 -36.19159 -35.28532 -34.19346 -32.58827 -32.40664 -30.98095 -29.11955 -26.72194 -25.63006 -25.13102 -23.61807 -22.64496 -22.36321 -20.81651 -20.44888 -18.91047 -17.51227 -17.26527 -16.95112 -16.49079 -16.22460 -16.10835 -15.59029 -15.17739 -14.66721 -14.44437 -13.97754 -13.61066 -13.52551 -13.25511 -13.22296 -13.05081 -12.83092 -12.27870 -12.06255 -11.89107 -11.77489 -11.60397 -11.54127 -11.38090 -11.35384 -11.24537 -10.97746 -10.80570 -10.59103 -10.45957 -10.28146 -10.23388 -10.04480 -9.79567 -9.66086 -9.30691 -9.23951 -8.95442 -8.45264 -7.99599 -6.06606 -4.13590 1.05212 1.18323 1.31139 3.30121 3.34340 3.34797 3.38967 3.68926 3.84540 4.05210 4.33969 4.40383 4.59082 4.70040 4.74452 4.85379 4.88664 4.97265 5.03418 5.08184 5.18036 5.24574 5.29918 5.50501 5.54787 5.61607 5.72922 5.79297 5.86641 6.04755 6.06920 6.10792 6.15925 6.26191 6.34978 6.58974 6.69576 6.78191 6.79200 7.00496 7.06284 7.45861 7.63080 7.78751 8.01426 8.04431 8.27660 8.88162 9.52160 10.98900 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012256 B = 0.004992 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.964101 B = 5607.376529 C = 6995.529775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.271 3.729 3 H 0.057 0.943 4 C -0.521 4.521 5 H 0.061 0.939 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.987 5.987 13 C 0.110 3.890 14 S 2.775 3.225 15 O -0.993 6.993 16 O -0.972 6.972 17 N -1.126 6.126 18 C 0.235 3.765 19 H 0.101 0.899 20 C -0.139 4.139 21 C -0.065 4.065 22 C -0.170 4.170 23 C 0.097 3.903 24 N -0.482 5.482 25 C 0.123 3.877 26 C -0.162 4.162 27 C -0.174 4.174 28 C -0.175 4.175 29 H 0.091 0.909 30 H 0.030 0.970 31 H 0.009 0.991 32 H 0.264 0.736 33 H 0.050 0.950 34 H 0.044 0.956 35 H 0.072 0.928 36 H 0.413 0.587 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.152 0.848 40 H 0.150 0.850 41 H 0.111 0.889 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.536 -2.545 17.279 18.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.169 3.831 3 H 0.075 0.925 4 C -0.561 4.561 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.830 5.830 13 C -0.037 4.037 14 S 2.784 3.216 15 O -0.976 6.976 16 O -0.956 6.956 17 N -0.883 5.883 18 C 0.126 3.874 19 H 0.119 0.881 20 C -0.143 4.143 21 C -0.092 4.092 22 C -0.190 4.190 23 C -0.060 4.060 24 N -0.190 5.190 25 C -0.035 4.035 26 C -0.182 4.182 27 C -0.211 4.211 28 C -0.212 4.212 29 H 0.109 0.891 30 H 0.050 0.950 31 H 0.028 0.972 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.247 0.753 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.169 0.831 40 H 0.167 0.833 41 H 0.129 0.871 42 H 0.117 0.883 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.912 -1.706 16.935 17.715 hybrid contribution -0.004 -0.970 -0.792 1.252 sum -4.916 -2.676 16.143 17.086 Atomic orbital electron populations 1.22053 0.98170 0.99399 1.00499 1.18700 0.91245 0.92855 0.80338 0.92489 1.21284 1.31785 1.12953 0.90059 0.92057 1.24907 0.94966 0.94984 0.98974 1.69861 1.36446 1.22579 1.23879 0.86563 0.79370 0.79537 0.81960 1.20263 1.21216 1.20169 1.57659 1.69894 1.19657 1.35770 1.21168 1.01851 0.82291 0.98356 1.02097 0.73717 0.73333 0.72428 1.93544 1.68950 1.60591 1.74512 1.93625 1.74293 1.55979 1.71682 1.56535 1.61419 1.17445 1.52905 1.18915 0.85687 0.94717 0.88118 0.88104 1.21054 0.96378 0.95098 1.01765 1.21416 0.93039 0.98964 0.95764 1.22071 0.96674 0.98484 1.01765 1.22745 0.99286 0.88789 0.95205 1.67700 1.02969 1.36160 1.12135 1.22431 0.91903 0.95600 0.93554 1.22597 0.94382 1.05351 0.95836 1.22977 1.03344 0.91537 1.03274 1.23087 0.97134 0.98823 1.02161 0.89073 0.95044 0.97221 0.92650 0.93156 0.93691 0.90958 0.75293 0.84848 0.84892 0.83055 0.83321 0.87080 0.88344 0.88834 0.88790 0.87498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 8.95 37.16 0.33 -2.89 16 2 C 0.27 6.57 2.62 -69.08 -0.18 6.39 16 3 H 0.06 1.55 6.91 -51.93 -0.36 1.19 16 4 C -0.52 -13.98 8.37 -34.44 -0.29 -14.26 16 5 H 0.06 1.63 7.65 -52.48 -0.40 1.23 16 6 C 0.06 1.74 5.31 -17.82 -0.09 1.65 16 7 N -0.89 -24.86 11.33 55.43 0.63 -24.23 16 8 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.99 -19.79 3.12 -115.85 -0.36 -20.16 16 13 C 0.11 1.87 9.53 59.85 0.57 2.44 16 14 S 2.78 52.05 5.97 -107.50 -0.64 51.41 16 15 O -0.99 -19.25 16.40 -57.17 -0.94 -20.19 16 16 O -0.97 -22.22 16.70 -57.17 -0.95 -23.17 16 17 N -1.13 -15.59 4.02 -5.88 -0.02 -15.62 16 18 C 0.23 2.76 2.89 -69.09 -0.20 2.56 16 19 H 0.10 1.19 6.05 -51.93 -0.31 0.88 16 20 C -0.14 -1.66 4.92 -104.48 -0.51 -2.17 16 21 C -0.07 -0.70 9.82 -39.28 -0.39 -1.08 16 22 C -0.17 -1.75 10.11 -39.44 -0.40 -2.15 16 23 C 0.10 1.13 11.18 -17.55 -0.20 0.94 16 24 N -0.48 -6.76 10.36 -13.25 -0.14 -6.90 16 25 C 0.12 1.61 10.49 -17.55 -0.18 1.43 16 26 C -0.16 -1.61 5.72 -90.62 -0.52 -2.13 16 27 C -0.17 -1.70 9.76 -26.70 -0.26 -1.96 16 28 C -0.18 -1.81 10.23 -26.69 -0.27 -2.09 16 29 H 0.09 2.33 6.08 -51.93 -0.32 2.02 16 30 H 0.03 0.67 6.66 -51.93 -0.35 0.33 16 31 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 32 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.04 0.62 6.34 -51.93 -0.33 0.29 16 35 H 0.07 1.21 6.43 -51.93 -0.33 0.87 16 36 H 0.41 5.05 6.73 -34.47 -0.23 4.82 16 37 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 38 H 0.13 1.01 8.06 -52.48 -0.42 0.58 16 39 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 40 H 0.15 1.79 7.06 -52.48 -0.37 1.42 16 41 H 0.11 0.98 8.07 -51.93 -0.42 0.56 16 42 H 0.10 1.01 6.32 -51.93 -0.33 0.68 16 43 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.11 1.34 7.80 -51.92 -0.40 0.94 16 LS Contribution 375.82 15.07 5.66 5.66 Total: -1.00 -33.02 375.82 -10.63 -43.65 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -6.25 Total: 6.72 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -2.59 Total: -13.33 kcal Atomic # 7 Polarization: -67.02 SS G_CDS: 0.11 Total: -66.91 kcal Atomic # 8 Polarization: -41.47 SS G_CDS: -1.89 Total: -43.36 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 52.05 SS G_CDS: -0.64 Total: 51.41 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.02 -10.63 -43.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331387219.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.836 kcal (2) G-P(sol) polarization free energy of solvation -33.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds