Wall clock time and date at job start Sat Apr 11 2020 05:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47251 * 2 1 4 4 C 1.50701 * 109.46957 * 240.00166 * 2 1 3 5 5 H 1.08004 * 119.99950 * 239.99997 * 4 2 1 6 6 C 1.37878 * 120.00406 * 60.27548 * 4 2 1 7 7 N 1.31524 * 119.99273 * 359.72493 * 6 4 2 8 8 Si 1.86798 * 120.00508 * 179.72402 * 6 4 2 9 9 H 1.48497 * 109.47046 * 60.00148 * 8 6 4 10 10 H 1.48497 * 109.46921 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47074 * 299.99912 * 8 6 4 12 12 N 1.46500 * 109.47337 * 120.00373 * 2 1 3 13 13 C 1.46503 * 120.00022 * 59.99888 * 12 2 1 14 14 S 1.65607 * 120.00017 * 239.99712 * 12 2 1 15 15 O 1.42096 * 106.40109 * 203.53611 * 14 12 2 16 16 O 1.42098 * 106.40042 * 336.46064 * 14 12 2 17 17 N 1.65599 * 107.21353 * 89.99820 * 14 12 2 18 18 C 1.46497 * 120.00246 * 64.59597 * 17 14 12 19 19 H 1.08999 * 109.47361 * 3.94920 * 18 17 14 20 20 C 1.50699 * 109.47220 * 243.94732 * 18 17 14 21 21 C 1.38679 * 120.41623 * 140.00116 * 20 18 17 22 22 C 1.38625 * 118.41585 * 180.02562 * 21 20 18 23 23 C 1.38227 * 119.16616 * 0.02562 * 22 21 20 24 24 N 1.31853 * 120.75937 * 359.97438 * 23 22 21 25 25 C 1.31883 * 121.72824 * 359.71420 * 24 23 22 26 26 C 1.52999 * 109.47281 * 123.94643 * 18 17 14 27 27 C 1.52998 * 117.50122 * 3.60360 * 26 18 17 28 28 C 1.53004 * 117.50161 * 294.94504 * 26 18 17 29 29 H 1.08992 * 109.46890 * 59.99536 * 1 2 3 30 30 H 1.08998 * 109.47251 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46430 * 299.99641 * 1 2 3 32 32 H 0.97000 * 119.99692 * 180.02562 * 7 6 4 33 33 H 1.08998 * 109.47167 * 90.00715 * 13 12 2 34 34 H 1.09007 * 109.46551 * 210.00269 * 13 12 2 35 35 H 1.08997 * 109.47076 * 330.00119 * 13 12 2 36 36 H 0.97003 * 120.00082 * 244.59292 * 17 14 12 37 37 H 1.08003 * 120.79065 * 359.97438 * 21 20 18 38 38 H 1.08004 * 120.41702 * 180.02562 * 22 21 20 39 39 H 1.07998 * 119.61893 * 179.97438 * 23 22 21 40 40 H 1.08006 * 119.62043 * 180.31211 * 25 24 23 41 41 H 1.08996 * 115.55288 * 149.27296 * 26 18 17 42 42 H 1.09006 * 117.49630 * 0.02562 * 27 26 18 43 43 H 1.08995 * 117.50268 * 145.01723 * 27 26 18 44 44 H 1.08995 * 117.50030 * 214.97824 * 28 26 18 45 45 H 1.09009 * 117.49373 * 359.97438 * 28 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.7039 -0.2361 -2.4828 7 7 0.9478 0.8333 -2.6034 8 14 2.3329 -1.1121 -4.0080 9 1 1.8385 -2.5123 -4.0139 10 1 1.8428 -0.4085 -5.2204 11 1 3.8179 -1.1114 -4.0022 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0933 1.4279 14 16 2.9705 0.1141 2.2862 15 8 3.7119 -0.8791 2.9814 16 8 3.5795 1.1828 1.5748 17 7 1.9608 0.8089 3.3998 18 6 1.1444 -0.0353 4.2756 19 1 1.3861 -1.0833 4.0985 20 6 -0.3149 0.2002 3.9825 21 6 -1.2075 -0.8610 3.9640 22 6 -2.5404 -0.5972 3.6893 23 6 -2.9326 0.7054 3.4442 24 7 -2.0559 1.6899 3.4702 25 6 -0.7814 1.4769 3.7339 26 6 1.4343 0.3150 5.7365 27 6 2.3972 1.4726 6.0078 28 6 2.8415 0.0306 6.2654 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8901 32 1 0.7164 1.1669 -3.4843 33 1 2.4158 -2.7378 0.9716 34 1 1.6239 -2.2853 2.5001 35 1 0.6905 -2.3003 0.9845 36 1 1.9099 1.7749 3.4722 37 1 -0.8719 -1.8691 4.1581 38 1 -3.2632 -1.3993 3.6670 39 1 -3.9692 0.9192 3.2290 40 1 -0.0935 2.3093 3.7513 41 1 0.6009 0.1815 6.4262 42 1 2.8239 1.9849 5.1454 43 1 2.1976 2.1004 6.8761 44 1 2.9339 -0.2896 7.3032 45 1 3.5607 -0.4065 5.5726 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331387219.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:53 Heat of formation + Delta-G solvation = -28.196162 kcal Electronic energy + Delta-G solvation = -29336.920728 eV Core-core repulsion = 25481.541136 eV Total energy + Delta-G solvation = -3855.379592 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.26008 -39.12744 -38.28450 -37.90767 -36.91095 -35.16733 -34.52603 -33.32068 -31.93138 -30.94475 -27.67555 -27.30865 -26.99030 -24.49818 -23.47958 -23.18400 -22.60459 -21.37252 -20.32921 -18.91463 -18.60554 -18.33642 -18.06987 -17.35600 -17.06734 -16.84971 -16.70155 -16.13608 -15.43777 -15.22309 -14.99728 -14.73973 -14.63799 -14.41432 -14.24813 -13.87535 -13.75005 -13.45669 -13.38148 -13.19513 -13.15726 -13.00491 -12.80864 -12.77010 -12.61363 -12.58699 -12.30697 -12.25712 -12.17361 -11.91049 -11.32248 -11.18348 -11.06328 -10.79325 -10.60888 -10.51075 -10.22043 -9.85342 -9.66198 -8.12105 -6.26211 -0.37465 0.24259 0.45358 1.42000 1.44321 1.51151 1.97452 2.42364 2.59633 2.86223 2.96266 3.16165 3.40580 3.46390 3.74894 3.81999 3.90424 3.99903 4.12422 4.15986 4.21955 4.25562 4.29573 4.46552 4.62162 4.69421 4.81667 4.84930 4.86492 4.92493 4.96527 5.03356 5.07822 5.13592 5.18229 5.25991 5.29129 5.33787 5.41357 5.59813 5.67109 5.85545 5.86277 5.97763 6.14811 6.28858 6.81505 7.12845 7.43003 8.91709 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012256 B = 0.004992 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.964101 B = 5607.376529 C = 6995.529775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.279 3.721 3 H 0.020 0.980 4 C -0.539 4.539 5 H 0.057 0.943 6 C 0.018 3.982 7 N -0.914 5.914 8 Si 0.955 3.045 9 H -0.265 1.265 10 H -0.283 1.283 11 H -0.279 1.279 12 N -0.994 5.994 13 C 0.102 3.898 14 S 2.793 3.207 15 O -0.999 6.999 16 O -1.019 7.019 17 N -1.112 6.112 18 C 0.231 3.769 19 H 0.105 0.895 20 C -0.143 4.143 21 C -0.069 4.069 22 C -0.164 4.164 23 C 0.081 3.919 24 N -0.514 5.514 25 C 0.102 3.898 26 C -0.153 4.153 27 C -0.177 4.177 28 C -0.179 4.179 29 H 0.061 0.939 30 H 0.042 0.958 31 H 0.023 0.977 32 H 0.264 0.736 33 H 0.042 0.958 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.420 0.580 37 H 0.161 0.839 38 H 0.164 0.836 39 H 0.171 0.829 40 H 0.147 0.853 41 H 0.130 0.870 42 H 0.087 0.913 43 H 0.112 0.888 44 H 0.114 0.886 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.612 -4.361 18.735 20.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.175 3.825 3 H 0.037 0.963 4 C -0.578 4.578 5 H 0.076 0.924 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.780 3.220 9 H -0.190 1.190 10 H -0.208 1.208 11 H -0.205 1.205 12 N -0.836 5.836 13 C -0.043 4.043 14 S 2.802 3.198 15 O -0.982 6.982 16 O -1.003 7.003 17 N -0.873 5.873 18 C 0.124 3.876 19 H 0.123 0.877 20 C -0.146 4.146 21 C -0.095 4.095 22 C -0.183 4.183 23 C -0.075 4.075 24 N -0.223 5.223 25 C -0.055 4.055 26 C -0.173 4.173 27 C -0.214 4.214 28 C -0.216 4.216 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.042 0.958 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.257 0.743 37 H 0.178 0.822 38 H 0.182 0.818 39 H 0.188 0.812 40 H 0.165 0.835 41 H 0.148 0.852 42 H 0.106 0.894 43 H 0.131 0.869 44 H 0.133 0.867 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.985 -3.541 18.402 19.672 hybrid contribution 0.304 -0.404 -1.150 1.257 sum -5.681 -3.945 17.252 18.587 Atomic orbital electron populations 1.21771 0.96943 0.99732 0.99651 1.18294 0.91928 0.91053 0.81215 0.96271 1.21621 1.31767 1.12996 0.91428 0.92437 1.25649 0.95207 0.95661 1.01709 1.69990 1.37303 1.23656 1.24366 0.85664 0.78459 0.79083 0.78755 1.18958 1.20807 1.20486 1.57524 1.69882 1.21002 1.35163 1.21391 1.01778 0.80357 1.00780 1.01360 0.73665 0.72492 0.72298 1.93532 1.69443 1.60843 1.74366 1.93558 1.75919 1.57568 1.73259 1.56095 1.61197 1.18108 1.51914 1.19133 0.85369 0.94397 0.88729 0.87701 1.21023 0.96348 0.95103 1.02176 1.21805 0.93054 0.99797 0.94867 1.22416 0.97193 0.98634 1.00106 1.23203 0.99952 0.89292 0.95102 1.67668 1.03621 1.37649 1.13338 1.22515 0.91983 0.96348 0.94663 1.22569 0.94789 1.05249 0.94722 1.23065 1.03059 0.91626 1.03659 1.23089 0.96706 0.99081 1.02762 0.92055 0.93933 0.95795 0.92705 0.93896 0.90089 0.90438 0.74287 0.82158 0.81806 0.81202 0.83522 0.85169 0.89420 0.86948 0.86745 0.89916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.51 8.95 71.98 0.64 -4.86 16 2 C 0.28 13.72 2.62 44.24 0.12 13.83 16 3 H 0.02 1.10 6.91 -2.39 -0.02 1.08 16 4 C -0.54 -29.16 8.37 25.60 0.21 -28.95 16 5 H 0.06 3.08 7.65 -2.91 -0.02 3.06 16 6 C 0.02 0.96 5.31 84.65 0.45 1.41 16 7 N -0.91 -51.98 11.33 21.45 0.24 -51.73 16 8 Si 0.95 43.44 29.54 68.60 2.03 45.46 16 9 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 N -0.99 -39.56 3.12 -520.44 -1.62 -41.19 16 13 C 0.10 3.32 9.53 127.77 1.22 4.53 16 14 S 2.79 105.07 5.97 -56.49 -0.34 104.73 16 15 O -1.00 -38.10 16.40 -128.00 -2.10 -40.20 16 16 O -1.02 -48.16 16.70 -128.00 -2.14 -50.30 16 17 N -1.11 -30.27 4.02 -172.53 -0.69 -30.96 16 18 C 0.23 5.01 2.89 44.25 0.13 5.13 16 19 H 0.11 2.19 6.05 -2.39 -0.01 2.18 16 20 C -0.14 -3.12 4.92 -19.77 -0.10 -3.22 16 21 C -0.07 -1.25 9.82 22.47 0.22 -1.03 16 22 C -0.16 -2.85 10.11 22.36 0.23 -2.63 16 23 C 0.08 1.75 11.18 84.69 0.95 2.70 16 24 N -0.51 -14.05 10.36 -195.85 -2.03 -16.08 16 25 C 0.10 2.60 10.49 84.67 0.89 3.49 16 26 C -0.15 -2.70 5.72 -10.79 -0.06 -2.76 16 27 C -0.18 -3.16 9.76 30.62 0.30 -2.86 16 28 C -0.18 -3.37 10.23 30.62 0.31 -3.05 16 29 H 0.06 3.18 6.08 -2.39 -0.01 3.16 16 30 H 0.04 1.78 6.66 -2.39 -0.02 1.77 16 31 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.26 14.33 8.31 -92.71 -0.77 13.55 16 33 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.08 2.00 6.34 -2.38 -0.02 1.99 16 35 H 0.08 2.42 6.43 -2.39 -0.02 2.41 16 36 H 0.42 10.38 6.73 -96.74 -0.65 9.73 16 37 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 38 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 39 H 0.17 2.81 8.06 -2.91 -0.02 2.78 16 40 H 0.15 3.56 7.06 -2.91 -0.02 3.54 16 41 H 0.13 1.86 8.07 -2.39 -0.02 1.84 16 42 H 0.09 1.75 6.32 -2.38 -0.02 1.74 16 43 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.08 1.99 7.80 -2.38 -0.02 1.97 16 Total: -1.00 -72.30 375.82 -0.78 -73.09 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: 0.36 Total: 25.43 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: 5.50 Total: -18.25 kcal Atomic # 7 Polarization: -135.86 SS G_CDS: -4.10 Total: -139.96 kcal Atomic # 8 Polarization: -86.26 SS G_CDS: -4.24 Total: -90.50 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: 105.07 SS G_CDS: -0.34 Total: 104.73 kcal Total: -72.30 -0.78 -73.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331387219.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.889 kcal (2) G-P(sol) polarization free energy of solvation -72.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds