Wall clock time and date at job start Sat Apr 11 2020 05:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35949 * 116.99854 * 2 1 4 4 C 1.38731 * 120.02900 * 359.97438 * 3 2 1 5 5 C 1.38124 * 119.96568 * 179.72691 * 4 3 2 6 6 C 1.38479 * 120.03409 * 359.97438 * 5 4 3 7 7 F 1.35099 * 119.96757 * 180.02562 * 6 5 4 8 8 C 1.38426 * 120.05829 * 0.02562 * 6 5 4 9 9 C 1.38173 * 120.03328 * 359.97438 * 8 6 5 10 10 C 1.50701 * 120.01873 * 180.02562 * 9 8 6 11 11 H 1.09004 * 109.47168 * 212.76465 * 10 9 8 12 12 C 1.52996 * 109.47430 * 92.75809 * 10 9 8 13 13 N 1.46505 * 109.46615 * 332.76041 * 10 9 8 14 14 C 1.34777 * 119.99819 * 207.19542 * 13 10 9 15 15 O 1.21588 * 119.99931 * 359.97438 * 14 13 10 16 16 N 1.34776 * 120.00177 * 180.02562 * 14 13 10 17 17 C 1.46499 * 120.00301 * 179.97438 * 16 14 13 18 18 C 1.50694 * 109.47402 * 180.02562 * 17 16 14 19 19 O 1.21297 * 120.00063 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00314 * 180.02562 * 18 17 16 21 21 C 1.37093 * 119.99944 * 179.97438 * 20 18 17 22 22 H 1.07998 * 120.00556 * 359.97438 * 21 20 18 23 23 C 1.38955 * 119.99693 * 179.97438 * 21 20 18 24 24 N 1.31408 * 120.00026 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99877 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47376 * 89.99896 * 25 23 21 27 27 H 1.48504 * 109.47111 * 209.99855 * 25 23 21 28 28 H 1.48502 * 109.47417 * 329.99722 * 25 23 21 29 29 H 1.09001 * 109.46873 * 300.00064 * 1 2 3 30 30 H 1.08991 * 109.47199 * 60.00303 * 1 2 3 31 31 H 1.09000 * 109.46928 * 180.02562 * 1 2 3 32 32 H 1.07993 * 120.01402 * 359.74738 * 4 3 2 33 33 H 1.08003 * 119.98413 * 180.02562 * 5 4 3 34 34 H 1.08002 * 119.98659 * 179.97438 * 8 6 5 35 35 H 1.08998 * 109.47075 * 300.00314 * 12 10 9 36 36 H 1.09003 * 109.46799 * 60.00165 * 12 10 9 37 37 H 1.08995 * 109.47232 * 180.02562 * 12 10 9 38 38 H 0.96998 * 119.99917 * 27.19329 * 13 10 9 39 39 H 0.96998 * 119.99558 * 359.97438 * 16 14 13 40 40 H 1.09004 * 109.47251 * 300.00046 * 17 16 14 41 41 H 1.09004 * 109.46992 * 59.99650 * 17 16 14 42 42 H 0.97001 * 119.99939 * 359.97438 * 20 18 17 43 43 H 0.97003 * 119.99935 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2912 2.3752 -0.0005 5 6 1.9195 3.6052 0.0052 6 6 3.3024 3.6770 0.0120 7 9 3.9157 4.8808 0.0181 8 6 4.0570 2.5165 0.0125 9 6 3.4311 1.2846 0.0068 10 6 4.2528 0.0214 0.0080 11 1 3.7293 -0.7532 -0.5524 12 6 4.4659 -0.4472 1.4488 13 7 5.5516 0.2832 -0.6175 14 6 6.2217 -0.7171 -1.2232 15 8 5.7486 -1.8368 -1.2501 16 7 7.4166 -0.4764 -1.7981 17 6 8.1453 -1.5638 -2.4560 18 6 9.4420 -1.0350 -3.0126 19 8 9.7292 0.1353 -2.8737 20 7 10.2823 -1.8621 -3.6655 21 6 11.4618 -1.3808 -4.1722 22 1 11.7174 -0.3388 -4.0486 23 6 12.3283 -2.2337 -4.8448 24 7 12.0175 -3.5016 -4.9948 25 14 13.9357 -1.5781 -5.5346 26 1 15.0028 -1.7054 -4.5097 27 1 14.3119 -2.3589 -6.7405 28 1 13.7704 -0.1488 -5.9021 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 0.2127 2.3195 -0.0051 33 1 1.3320 4.5115 0.0052 34 1 5.1355 2.5738 0.0174 35 1 4.9895 0.3274 2.0090 36 1 3.4996 -0.6419 1.9141 37 1 5.0606 -1.3605 1.4496 38 1 5.9291 1.1764 -0.5956 39 1 7.7942 0.4168 -1.7763 40 1 8.3553 -2.3508 -1.7317 41 1 7.5396 -1.9685 -3.2669 42 1 10.0526 -2.7979 -3.7768 43 1 12.6227 -4.0971 -5.4640 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344390269.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:15 Heat of formation + Delta-G solvation = -119.840604 kcal Electronic energy + Delta-G solvation = -28425.838728 eV Core-core repulsion = 24000.271959 eV Total energy + Delta-G solvation = -4425.566769 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.11970 -40.89550 -39.77363 -38.28194 -37.72332 -35.69754 -34.36223 -33.62546 -31.84229 -31.32422 -30.50101 -29.44915 -27.63534 -27.31910 -24.68285 -24.16463 -22.80110 -21.55226 -20.43886 -19.55345 -18.96219 -18.25782 -17.97266 -17.43699 -17.15967 -16.29022 -16.00321 -15.71764 -15.56444 -15.41707 -15.11439 -14.90082 -14.69660 -14.53674 -14.19137 -14.12546 -13.81816 -13.43842 -13.40140 -13.17954 -13.10665 -12.59068 -12.34118 -12.16335 -12.15115 -11.91745 -11.61343 -11.56253 -11.34051 -11.10857 -11.02145 -10.44397 -10.30162 -10.00796 -9.61505 -9.51888 -9.18240 -8.62214 -8.60059 -8.44611 -8.07785 -6.49361 -3.91234 0.67237 0.79209 2.77033 2.80927 3.10855 3.13294 3.23542 3.29105 3.42359 3.77680 3.86295 4.09999 4.13427 4.26104 4.41718 4.54675 4.65779 4.72829 4.82542 4.92791 4.98324 5.09100 5.17438 5.19419 5.21797 5.36136 5.55666 5.62418 5.67685 5.74155 5.88358 6.00126 6.03702 6.10849 6.11959 6.26506 6.54085 6.78028 6.87386 7.09628 7.48050 7.94704 8.24427 8.47627 8.81511 9.06879 9.41955 9.89949 10.67573 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018820 B = 0.002038 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.443757 B =13736.806691 C =14757.746431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.306 6.306 3 C 0.130 3.870 4 C -0.177 4.177 5 C -0.115 4.115 6 C 0.068 3.932 7 F -0.139 7.139 8 C -0.111 4.111 9 C -0.090 4.090 10 C 0.211 3.789 11 H 0.109 0.891 12 C -0.156 4.156 13 N -0.747 5.747 14 C 0.707 3.293 15 O -0.594 6.594 16 N -0.724 5.724 17 C 0.129 3.871 18 C 0.429 3.571 19 O -0.598 6.598 20 N -0.550 5.550 21 C -0.304 4.304 22 H 0.105 0.895 23 C 0.025 3.975 24 N -0.895 5.895 25 Si 0.933 3.067 26 H -0.277 1.277 27 H -0.283 1.283 28 H -0.269 1.269 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.104 0.896 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.394 0.606 39 H 0.406 0.594 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.396 0.604 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.256 9.332 12.108 28.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.219 6.219 3 C 0.083 3.917 4 C -0.196 4.196 5 C -0.134 4.134 6 C 0.048 3.952 7 F -0.117 7.117 8 C -0.130 4.130 9 C -0.091 4.091 10 C 0.105 3.895 11 H 0.126 0.874 12 C -0.214 4.214 13 N -0.404 5.404 14 C 0.407 3.593 15 O -0.473 6.473 16 N -0.381 5.381 17 C 0.000 4.000 18 C 0.215 3.785 19 O -0.485 6.485 20 N -0.185 5.185 21 C -0.434 4.434 22 H 0.123 0.877 23 C -0.178 4.178 24 N -0.535 5.535 25 Si 0.760 3.240 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.193 1.193 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.122 0.878 32 H 0.158 0.842 33 H 0.156 0.844 34 H 0.160 0.840 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.229 0.771 39 H 0.244 0.756 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.230 0.770 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -24.246 8.731 12.042 28.445 hybrid contribution 0.883 0.955 -0.458 1.379 sum -23.363 9.686 11.583 27.818 Atomic orbital electron populations 1.23133 0.78014 1.04484 1.01367 1.86157 1.21575 1.25940 1.88253 1.18699 0.91241 0.84785 0.96929 1.21065 1.00472 0.91158 1.06889 1.20934 0.92681 0.98793 1.00980 1.17478 0.90796 0.80587 1.06327 1.91516 1.83273 1.42717 1.94212 1.20743 1.00795 0.90144 1.01316 1.19167 0.90839 0.95061 1.04079 1.19397 0.81885 0.93386 0.94788 0.87365 1.22155 1.02428 1.02085 0.94751 1.45259 1.21822 1.11833 1.61527 1.15802 0.80728 0.84451 0.78331 1.90906 1.69294 1.21440 1.65669 1.44771 1.19500 1.14247 1.59622 1.20784 0.92358 0.89196 0.97627 1.19776 0.86389 0.87307 0.85074 1.90492 1.76942 1.17188 1.63830 1.41787 1.17741 1.11295 1.47628 1.19723 0.94694 0.97052 1.31902 0.87703 1.25325 1.00022 0.95118 0.97312 1.69616 1.38093 1.03795 1.41995 0.85814 0.81001 0.78923 0.78287 1.20283 1.20819 1.19340 0.92485 0.92456 0.87809 0.84226 0.84356 0.84038 0.92477 0.91441 0.91171 0.77050 0.75638 0.89973 0.89990 0.77008 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 101.05 0.99 1.11 16 2 O -0.31 -2.67 9.59 -19.58 -0.19 -2.85 16 3 C 0.13 1.16 6.66 -39.23 -0.26 0.90 16 4 C -0.18 -1.26 9.04 -39.44 -0.36 -1.61 16 5 C -0.11 -0.87 10.02 -39.53 -0.40 -1.26 16 6 C 0.07 0.63 7.30 -39.42 -0.29 0.34 16 7 F -0.14 -1.44 17.27 2.25 0.04 -1.40 16 8 C -0.11 -1.03 9.20 -39.54 -0.36 -1.40 16 9 C -0.09 -0.89 5.06 -104.48 -0.53 -1.42 16 10 C 0.21 2.42 2.56 -69.08 -0.18 2.25 16 11 H 0.11 1.47 6.99 -51.93 -0.36 1.11 16 12 C -0.16 -1.63 9.49 37.16 0.35 -1.27 16 13 N -0.75 -9.35 4.98 -59.81 -0.30 -9.64 16 14 C 0.71 11.63 8.55 -86.92 -0.74 10.88 16 15 O -0.59 -11.61 15.97 5.29 0.08 -11.53 16 16 N -0.72 -12.34 5.53 -66.41 -0.37 -12.71 16 17 C 0.13 2.42 6.15 -5.20 -0.03 2.39 16 18 C 0.43 9.92 7.85 -10.99 -0.09 9.83 16 19 O -0.60 -15.38 15.24 5.54 0.08 -15.29 16 20 N -0.55 -13.73 5.29 -10.96 -0.06 -13.79 16 21 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 22 H 0.11 2.98 7.16 -52.49 -0.38 2.61 16 23 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 24 N -0.89 -24.02 13.05 55.50 0.72 -23.30 16 25 Si 0.93 20.66 29.55 -169.99 -5.02 15.64 16 26 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 27 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 28 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 29 H 0.06 0.18 7.67 -51.93 -0.40 -0.22 16 30 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 31 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.14 0.62 6.30 -52.49 -0.33 0.28 16 33 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 34 H 0.14 1.16 6.17 -52.49 -0.32 0.83 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.39 4.08 6.32 -40.82 -0.26 3.82 16 39 H 0.41 6.73 7.45 -40.82 -0.30 6.42 16 40 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 41 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 42 H 0.40 9.52 7.90 -40.82 -0.32 9.20 16 43 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 373.48 15.07 5.63 5.63 Total: -1.00 -33.06 373.48 -6.67 -39.73 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: -5.17 Total: 16.67 kcal Atomic # 6 Polarization: 14.97 SS G_CDS: -2.13 Total: 12.84 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: 0.00 Total: -59.44 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -0.02 Total: -29.68 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.06 -6.67 -39.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344390269.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.106 kcal (2) G-P(sol) polarization free energy of solvation -33.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds