Wall clock time and date at job start Sat Apr 11 2020 05:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47075 * 2 1 4 4 C 1.53003 * 109.47046 * 119.99539 * 2 1 3 5 5 N 1.46506 * 109.47099 * 185.00215 * 4 2 1 6 6 C 1.34768 * 120.00173 * 180.02562 * 5 4 2 7 7 O 1.21590 * 119.99984 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00495 * 180.02562 * 6 5 4 9 9 C 1.46503 * 120.00583 * 179.97438 * 8 6 5 10 10 C 1.50694 * 109.47025 * 179.97438 * 9 8 6 11 11 O 1.21292 * 120.00369 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99771 * 179.97438 * 10 9 8 13 13 C 1.37102 * 120.00081 * 180.02562 * 12 10 9 14 14 H 1.07996 * 120.00039 * 359.97438 * 13 12 10 15 15 C 1.38950 * 119.99631 * 180.02562 * 13 12 10 16 16 N 1.31404 * 120.00441 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99585 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47016 * 89.99691 * 17 15 13 19 19 H 1.48498 * 109.46895 * 209.99840 * 17 15 13 20 20 H 1.48504 * 109.47031 * 330.00141 * 17 15 13 21 21 O 1.42898 * 109.47531 * 239.99976 * 2 1 3 22 22 C 1.35957 * 117.00074 * 84.97553 * 21 2 1 23 23 C 1.38653 * 120.06091 * 354.52245 * 22 21 2 24 24 C 1.38189 * 119.96801 * 179.71772 * 23 22 21 25 25 C 1.38256 * 120.09290 * 0.55049 * 24 23 22 26 26 C 1.38258 * 120.12511 * 359.72825 * 25 24 23 27 27 C 1.38328 * 120.03189 * 359.97438 * 26 25 24 28 28 F 1.35103 * 120.04987 * 180.02562 * 27 26 25 29 29 H 1.08998 * 109.47294 * 299.99844 * 1 2 3 30 30 H 1.08999 * 109.47094 * 60.00246 * 1 2 3 31 31 H 1.09001 * 109.46663 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47246 * 305.00360 * 4 2 1 33 33 H 1.08997 * 109.46994 * 65.00745 * 4 2 1 34 34 H 0.97001 * 119.99687 * 359.97438 * 5 4 2 35 35 H 0.97009 * 119.99347 * 359.97438 * 8 6 5 36 36 H 1.08998 * 109.46588 * 300.00106 * 9 8 6 37 37 H 1.08996 * 109.46944 * 60.00100 * 9 8 6 38 38 H 0.96998 * 120.00175 * 359.97438 * 12 10 9 39 39 H 0.96998 * 120.00023 * 180.02562 * 16 15 13 40 40 H 1.08000 * 120.02157 * 359.96723 * 23 22 21 41 41 H 1.07996 * 119.95299 * 180.26954 * 24 23 22 42 42 H 1.08003 * 119.93912 * 179.74448 * 25 24 23 43 43 H 1.08002 * 119.98242 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.6177 1.3111 6 6 4.1731 -1.1832 2.3326 7 8 3.5686 -1.7796 3.2028 8 7 5.5162 -1.0877 2.3897 9 6 6.2478 -1.7019 3.5005 10 6 7.7240 -1.4527 3.3285 11 8 8.1257 -0.8243 2.3719 12 7 8.5981 -1.9281 4.2376 13 6 9.9411 -1.7010 4.0814 14 1 10.2987 -1.1415 3.2297 15 6 10.8422 -2.1917 5.0185 16 7 10.4072 -2.8729 6.0545 17 14 12.6722 -1.8828 4.8053 18 1 13.0420 -0.6133 5.4813 19 1 13.4368 -3.0049 5.4066 20 1 12.9924 -1.7847 3.3585 21 8 2.0064 -0.6736 -1.1667 22 6 2.1122 0.0628 -2.3047 23 6 1.6590 1.3729 -2.3288 24 6 1.7728 2.1215 -3.4848 25 6 2.3276 1.5624 -4.6210 26 6 2.7754 0.2545 -4.6030 27 6 2.6697 -0.4977 -3.4469 28 9 3.1077 -1.7756 -3.4287 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6053 -0.2616 2.1370 33 1 1.7517 -1.7714 1.2057 34 1 3.9824 -0.1429 0.6163 35 1 5.9986 -0.6121 1.6953 36 1 5.9125 -1.2659 4.4415 37 1 6.0596 -2.7754 3.5100 38 1 8.2769 -2.4303 5.0028 39 1 11.0362 -3.2150 6.7088 40 1 1.2210 1.8095 -1.4434 41 1 1.4237 3.1434 -3.5020 42 1 2.4115 2.1484 -5.5243 43 1 3.2081 -0.1802 -5.4920 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345065057.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:19 Heat of formation + Delta-G solvation = -123.224654 kcal Electronic energy + Delta-G solvation = -28159.938893 eV Core-core repulsion = 23734.225380 eV Total energy + Delta-G solvation = -4425.713513 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.01501 -40.73341 -39.75269 -38.30848 -37.97537 -35.11251 -34.36158 -33.62889 -32.34847 -31.34864 -31.09709 -29.99369 -28.00024 -26.06768 -24.35880 -23.97749 -22.88364 -21.46462 -20.69677 -19.56757 -19.00373 -18.41654 -17.98774 -17.45414 -16.97699 -16.43793 -16.13270 -15.77327 -15.58192 -15.37800 -15.11558 -14.82240 -14.74029 -14.58141 -14.27489 -14.13336 -13.78774 -13.46105 -13.43974 -13.08136 -12.94134 -12.73240 -12.64195 -12.25851 -12.15724 -11.88146 -11.63208 -11.61287 -11.50236 -11.21426 -11.10875 -10.44516 -10.30496 -10.05689 -9.61709 -9.36465 -9.19983 -8.60638 -8.60072 -8.59522 -8.07971 -6.49447 -3.91393 0.69906 0.83534 2.57386 2.77269 3.13103 3.15860 3.23342 3.29019 3.40667 3.77419 3.85807 4.09514 4.13551 4.29161 4.34610 4.45089 4.47309 4.62165 4.75148 4.80750 4.92450 4.97132 5.14871 5.19273 5.19666 5.37832 5.49558 5.54300 5.63237 5.67061 5.75462 5.93554 5.95188 6.03085 6.10513 6.23910 6.42400 6.76814 6.90137 7.06411 7.47921 7.94530 8.22586 8.47453 8.78883 9.06714 9.41712 9.89740 10.67495 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015129 B = 0.002022 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.348975 B =13846.652246 C =15048.823375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.069 3.931 3 H 0.083 0.917 4 C 0.147 3.853 5 N -0.748 5.748 6 C 0.707 3.293 7 O -0.598 6.598 8 N -0.723 5.723 9 C 0.129 3.871 10 C 0.429 3.571 11 O -0.598 6.598 12 N -0.550 5.550 13 C -0.304 4.304 14 H 0.105 0.895 15 C 0.025 3.975 16 N -0.895 5.895 17 Si 0.933 3.067 18 H -0.277 1.277 19 H -0.283 1.283 20 H -0.269 1.269 21 O -0.297 6.297 22 C 0.100 3.900 23 C -0.186 4.186 24 C -0.090 4.090 25 C -0.131 4.131 26 C -0.117 4.117 27 C 0.069 3.931 28 F -0.130 7.130 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.398 0.602 35 H 0.407 0.593 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.396 0.604 39 H 0.274 0.726 40 H 0.140 0.860 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.625 9.480 -17.112 29.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.013 3.987 3 H 0.101 0.899 4 C 0.022 3.978 5 N -0.405 5.405 6 C 0.406 3.594 7 O -0.477 6.477 8 N -0.381 5.381 9 C 0.000 4.000 10 C 0.215 3.785 11 O -0.484 6.484 12 N -0.185 5.185 13 C -0.434 4.434 14 H 0.123 0.877 15 C -0.178 4.178 16 N -0.535 5.535 17 Si 0.760 3.240 18 H -0.203 1.203 19 H -0.208 1.208 20 H -0.193 1.193 21 O -0.210 6.210 22 C 0.054 3.946 23 C -0.205 4.205 24 C -0.108 4.108 25 C -0.149 4.149 26 C -0.135 4.135 27 C 0.049 3.951 28 F -0.109 7.109 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.097 0.903 34 H 0.231 0.769 35 H 0.244 0.756 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.230 0.770 39 H 0.084 0.916 40 H 0.157 0.843 41 H 0.150 0.850 42 H 0.152 0.848 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -21.713 8.971 -16.698 28.823 hybrid contribution 1.192 0.183 -0.142 1.214 sum -20.522 9.154 -16.840 28.080 Atomic orbital electron populations 1.22309 0.93473 1.04287 1.03486 1.22840 0.95305 0.97075 0.83493 0.89893 1.21247 0.79758 1.02022 0.94727 1.44924 1.06972 1.61087 1.27508 1.15792 0.81763 0.79741 0.82086 1.90907 1.68138 1.48203 1.40462 1.44763 1.04520 1.59736 1.29050 1.20787 0.90802 0.98843 0.89546 1.19768 0.87049 0.85918 0.85810 1.90492 1.79202 1.45880 1.32850 1.41788 1.06576 1.47544 1.22546 1.19724 0.80852 1.33226 1.09580 0.87708 1.25324 1.00953 0.96273 0.95215 1.69612 1.36204 1.35670 1.12009 0.85814 0.81498 0.77908 0.78805 1.20287 1.20804 1.19331 1.86278 1.80975 1.37640 1.16151 1.19032 0.97519 0.91323 0.86724 1.21248 1.05481 0.93111 1.00612 1.21038 0.97756 0.99916 0.92115 1.20952 1.00293 0.94512 0.99137 1.21078 1.00956 0.94818 0.96694 1.17063 1.03623 0.80930 0.93449 1.91537 1.87370 1.35025 1.96944 0.90166 0.91284 0.90686 0.89292 0.90299 0.76875 0.75585 0.89979 0.89978 0.77006 0.91606 0.84256 0.85038 0.84844 0.84043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.99 9.17 37.16 0.34 -0.65 16 2 C 0.07 0.53 2.26 -26.73 -0.06 0.47 16 3 H 0.08 0.51 6.31 -51.93 -0.33 0.18 16 4 C 0.15 1.48 5.34 -4.04 -0.02 1.46 16 5 N -0.75 -9.36 5.51 -65.22 -0.36 -9.71 16 6 C 0.71 11.80 8.57 -86.93 -0.74 11.05 16 7 O -0.60 -11.83 16.34 5.29 0.09 -11.74 16 8 N -0.72 -12.61 5.53 -66.42 -0.37 -12.97 16 9 C 0.13 2.46 6.15 -5.20 -0.03 2.42 16 10 C 0.43 10.02 7.85 -10.99 -0.09 9.94 16 11 O -0.60 -15.54 15.24 5.55 0.08 -15.45 16 12 N -0.55 -13.83 5.29 -10.97 -0.06 -13.88 16 13 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 14 H 0.11 3.00 7.16 -52.49 -0.38 2.62 16 15 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 16 N -0.89 -24.10 13.05 55.50 0.72 -23.38 16 17 Si 0.93 20.72 29.55 -169.99 -5.02 15.70 16 18 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 21 O -0.30 -3.08 9.61 -19.61 -0.19 -3.27 16 22 C 0.10 0.97 6.61 -39.18 -0.26 0.71 16 23 C -0.19 -1.30 8.24 -39.45 -0.33 -1.63 16 24 C -0.09 -0.53 10.04 -39.59 -0.40 -0.93 16 25 C -0.13 -0.80 10.04 -39.57 -0.40 -1.19 16 26 C -0.12 -0.91 10.02 -39.54 -0.40 -1.30 16 27 C 0.07 0.72 7.31 -39.30 -0.29 0.43 16 28 F -0.13 -1.66 17.11 2.25 0.04 -1.62 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.35 6.91 -51.93 -0.36 -0.01 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.40 4.36 8.49 -40.82 -0.35 4.01 16 35 H 0.41 6.95 7.45 -40.82 -0.30 6.64 16 36 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 37 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 38 H 0.40 9.58 7.90 -40.82 -0.32 9.26 16 39 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.14 0.70 5.43 -52.49 -0.28 0.42 16 41 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 42 H 0.13 0.49 8.06 -52.48 -0.42 0.07 16 43 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 376.32 15.07 5.67 5.67 Total: -1.00 -33.97 376.32 -7.56 -41.53 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: -5.26 Total: 16.29 kcal Atomic # 6 Polarization: 15.76 SS G_CDS: -2.91 Total: 12.85 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: -0.06 Total: -59.95 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -0.02 Total: -30.46 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.97 -7.56 -41.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345065057.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.699 kcal (2) G-P(sol) polarization free energy of solvation -33.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds