Wall clock time and date at job start Sat Apr 11 2020 05:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47075 * 2 1 4 4 C 1.53003 * 109.47046 * 119.99539 * 2 1 3 5 5 N 1.46506 * 109.47099 * 185.00215 * 4 2 1 6 6 C 1.34768 * 120.00173 * 180.02562 * 5 4 2 7 7 O 1.21590 * 119.99984 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00495 * 180.02562 * 6 5 4 9 9 C 1.46503 * 120.00583 * 179.97438 * 8 6 5 10 10 C 1.50694 * 109.47025 * 179.97438 * 9 8 6 11 11 O 1.21292 * 120.00369 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99771 * 179.97438 * 10 9 8 13 13 C 1.37102 * 120.00081 * 180.02562 * 12 10 9 14 14 H 1.07996 * 120.00039 * 359.97438 * 13 12 10 15 15 C 1.38950 * 119.99631 * 180.02562 * 13 12 10 16 16 N 1.31404 * 120.00441 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99585 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47016 * 89.99691 * 17 15 13 19 19 H 1.48498 * 109.46895 * 209.99840 * 17 15 13 20 20 H 1.48504 * 109.47031 * 330.00141 * 17 15 13 21 21 O 1.42898 * 109.47531 * 239.99976 * 2 1 3 22 22 C 1.35957 * 117.00074 * 84.97553 * 21 2 1 23 23 C 1.38653 * 120.06091 * 354.52245 * 22 21 2 24 24 C 1.38189 * 119.96801 * 179.71772 * 23 22 21 25 25 C 1.38256 * 120.09290 * 0.55049 * 24 23 22 26 26 C 1.38258 * 120.12511 * 359.72825 * 25 24 23 27 27 C 1.38328 * 120.03189 * 359.97438 * 26 25 24 28 28 F 1.35103 * 120.04987 * 180.02562 * 27 26 25 29 29 H 1.08998 * 109.47294 * 299.99844 * 1 2 3 30 30 H 1.08999 * 109.47094 * 60.00246 * 1 2 3 31 31 H 1.09001 * 109.46663 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47246 * 305.00360 * 4 2 1 33 33 H 1.08997 * 109.46994 * 65.00745 * 4 2 1 34 34 H 0.97001 * 119.99687 * 359.97438 * 5 4 2 35 35 H 0.97009 * 119.99347 * 359.97438 * 8 6 5 36 36 H 1.08998 * 109.46588 * 300.00106 * 9 8 6 37 37 H 1.08996 * 109.46944 * 60.00100 * 9 8 6 38 38 H 0.96998 * 120.00175 * 359.97438 * 12 10 9 39 39 H 0.96998 * 120.00023 * 180.02562 * 16 15 13 40 40 H 1.08000 * 120.02157 * 359.96723 * 23 22 21 41 41 H 1.07996 * 119.95299 * 180.26954 * 24 23 22 42 42 H 1.08003 * 119.93912 * 179.74448 * 25 24 23 43 43 H 1.08002 * 119.98242 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.6177 1.3111 6 6 4.1731 -1.1832 2.3326 7 8 3.5686 -1.7796 3.2028 8 7 5.5162 -1.0877 2.3897 9 6 6.2478 -1.7019 3.5005 10 6 7.7240 -1.4527 3.3285 11 8 8.1257 -0.8243 2.3719 12 7 8.5981 -1.9281 4.2376 13 6 9.9411 -1.7010 4.0814 14 1 10.2987 -1.1415 3.2297 15 6 10.8422 -2.1917 5.0185 16 7 10.4072 -2.8729 6.0545 17 14 12.6722 -1.8828 4.8053 18 1 13.0420 -0.6133 5.4813 19 1 13.4368 -3.0049 5.4066 20 1 12.9924 -1.7847 3.3585 21 8 2.0064 -0.6736 -1.1667 22 6 2.1122 0.0628 -2.3047 23 6 1.6590 1.3729 -2.3288 24 6 1.7728 2.1215 -3.4848 25 6 2.3276 1.5624 -4.6210 26 6 2.7754 0.2545 -4.6030 27 6 2.6697 -0.4977 -3.4469 28 9 3.1077 -1.7756 -3.4287 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6053 -0.2616 2.1370 33 1 1.7517 -1.7714 1.2057 34 1 3.9824 -0.1429 0.6163 35 1 5.9986 -0.6121 1.6953 36 1 5.9125 -1.2659 4.4415 37 1 6.0596 -2.7754 3.5100 38 1 8.2769 -2.4303 5.0028 39 1 11.0362 -3.2150 6.7088 40 1 1.2210 1.8095 -1.4434 41 1 1.4237 3.1434 -3.5020 42 1 2.4115 2.1484 -5.5243 43 1 3.2081 -0.1802 -5.4920 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345065057.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:18 Heat of formation + Delta-G solvation = -148.453849 kcal Electronic energy + Delta-G solvation = -28161.032913 eV Core-core repulsion = 23734.225380 eV Total energy + Delta-G solvation = -4426.807533 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.82615 -41.49941 -41.00196 -40.02250 -38.69764 -36.33162 -35.99536 -35.28549 -33.40928 -33.08158 -31.64690 -30.55961 -29.45240 -27.24568 -26.01804 -24.62079 -23.47622 -22.14870 -21.98390 -21.37526 -20.13022 -19.66857 -19.53506 -18.19678 -17.79086 -17.48619 -17.30675 -16.95256 -16.93466 -16.51347 -16.20548 -16.07283 -15.76223 -15.66596 -15.61316 -15.38868 -15.11008 -14.71252 -14.33067 -13.96533 -13.86200 -13.69481 -13.54820 -13.42406 -13.28597 -13.11201 -12.90622 -12.75366 -12.46222 -12.18907 -12.13146 -12.09088 -11.79017 -11.57485 -11.46930 -10.56811 -10.48196 -10.11031 -9.92132 -9.87266 -9.21469 -8.51277 -6.01614 0.14031 0.27876 1.36174 1.41922 1.52124 1.58582 1.88889 1.96766 2.09006 2.28339 2.62326 3.01799 3.15775 3.25888 3.27546 3.49847 3.77711 3.88530 3.95413 4.02422 4.20403 4.25243 4.33789 4.41372 4.42256 4.45566 4.57590 4.65360 4.80428 4.82288 4.99776 5.12099 5.20566 5.27690 5.28166 5.37626 5.39695 5.45135 5.72344 5.85260 5.92255 6.30635 6.47648 6.94950 7.03009 7.40966 7.48663 7.93952 8.65650 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015129 B = 0.002022 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.348975 B =13846.652246 C =15048.823375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.073 3.927 3 H 0.103 0.897 4 C 0.143 3.857 5 N -0.734 5.734 6 C 0.706 3.294 7 O -0.629 6.629 8 N -0.725 5.725 9 C 0.142 3.858 10 C 0.433 3.567 11 O -0.625 6.625 12 N -0.559 5.559 13 C -0.337 4.337 14 H 0.086 0.914 15 C -0.011 4.011 16 N -0.916 5.916 17 Si 0.998 3.002 18 H -0.269 1.269 19 H -0.272 1.272 20 H -0.271 1.271 21 O -0.324 6.324 22 C 0.083 3.917 23 C -0.185 4.185 24 C -0.084 4.084 25 C -0.128 4.128 26 C -0.122 4.122 27 C 0.026 3.974 28 F -0.156 7.156 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.061 0.939 34 H 0.406 0.594 35 H 0.409 0.591 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.399 0.601 39 H 0.280 0.720 40 H 0.161 0.839 41 H 0.164 0.836 42 H 0.162 0.838 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.457 11.567 -17.756 30.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.018 3.982 3 H 0.121 0.879 4 C 0.019 3.981 5 N -0.389 5.389 6 C 0.405 3.595 7 O -0.511 6.511 8 N -0.382 5.382 9 C 0.013 3.987 10 C 0.220 3.780 11 O -0.513 6.513 12 N -0.194 5.194 13 C -0.466 4.466 14 H 0.104 0.896 15 C -0.212 4.212 16 N -0.556 5.556 17 Si 0.821 3.179 18 H -0.194 1.194 19 H -0.196 1.196 20 H -0.195 1.195 21 O -0.238 6.238 22 C 0.037 3.963 23 C -0.203 4.203 24 C -0.102 4.102 25 C -0.146 4.146 26 C -0.140 4.140 27 C 0.006 3.994 28 F -0.135 7.135 29 H 0.119 0.881 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.120 0.880 33 H 0.080 0.920 34 H 0.242 0.758 35 H 0.246 0.754 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.233 0.767 39 H 0.090 0.910 40 H 0.179 0.821 41 H 0.182 0.818 42 H 0.180 0.820 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -22.583 11.073 -17.367 30.565 hybrid contribution 1.364 -0.408 -0.014 1.424 sum -21.219 10.665 -17.382 29.429 Atomic orbital electron populations 1.22300 0.91681 1.04122 1.04940 1.22913 0.96507 0.97213 0.81609 0.87917 1.21457 0.78105 1.01678 0.96844 1.44898 1.08007 1.59750 1.26288 1.15896 0.81313 0.79682 0.82569 1.90883 1.68574 1.49707 1.41931 1.44703 1.04910 1.59913 1.28709 1.20595 0.87761 0.99579 0.90743 1.20414 0.88559 0.84363 0.84645 1.90468 1.80255 1.46765 1.33789 1.41835 1.06326 1.48148 1.23140 1.19731 0.82278 1.34706 1.09935 0.89622 1.26144 1.04990 0.95508 0.94553 1.69678 1.37745 1.35761 1.12376 0.84860 0.76203 0.78275 0.78588 1.19424 1.19632 1.19528 1.86232 1.81589 1.38974 1.17032 1.19240 0.98432 0.92376 0.86229 1.21535 1.04852 0.91969 1.01978 1.21492 0.96238 1.01125 0.91312 1.21355 0.99012 0.93775 1.00457 1.21336 1.00888 0.95557 0.96248 1.17599 1.05958 0.80600 0.95206 1.91457 1.88028 1.36809 1.97173 0.88147 0.90276 0.91744 0.88014 0.92010 0.75841 0.75364 0.88705 0.89206 0.76656 0.91044 0.82139 0.81827 0.81993 0.83028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 9.17 71.98 0.66 -0.94 16 2 C 0.07 1.02 2.26 30.59 0.07 1.09 16 3 H 0.10 1.00 6.31 -2.39 -0.02 0.99 16 4 C 0.14 2.78 5.34 86.38 0.46 3.24 16 5 N -0.73 -17.92 5.51 -478.54 -2.64 -20.56 16 6 C 0.71 23.32 8.57 179.06 1.53 24.85 16 7 O -0.63 -24.73 16.34 -4.00 -0.07 -24.80 16 8 N -0.72 -25.10 5.53 -482.32 -2.67 -27.76 16 9 C 0.14 5.39 6.15 85.63 0.53 5.92 16 10 C 0.43 20.46 7.85 87.65 0.69 21.15 16 11 O -0.62 -32.94 15.24 -3.07 -0.05 -32.99 16 12 N -0.56 -28.55 5.29 -306.99 -1.62 -30.18 16 13 C -0.34 -18.81 9.68 84.04 0.81 -17.99 16 14 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 15 C -0.01 -0.59 5.50 84.93 0.47 -0.13 16 16 N -0.92 -49.09 13.05 21.66 0.28 -48.81 16 17 Si 1.00 42.14 29.55 68.60 2.03 44.17 16 18 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 19 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 21 O -0.32 -6.71 9.61 -93.07 -0.89 -7.60 16 22 C 0.08 1.56 6.61 22.53 0.15 1.71 16 23 C -0.18 -2.15 8.24 22.36 0.18 -1.96 16 24 C -0.08 -0.71 10.04 22.26 0.22 -0.49 16 25 C -0.13 -1.23 10.04 22.28 0.22 -1.01 16 26 C -0.12 -1.81 10.02 22.30 0.22 -1.59 16 27 C 0.03 0.56 7.31 22.45 0.16 0.72 16 28 F -0.16 -4.28 17.11 44.97 0.77 -3.51 16 29 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.08 0.60 6.91 -2.39 -0.02 0.58 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.41 8.63 8.49 -92.71 -0.79 7.85 16 35 H 0.41 13.94 7.45 -92.70 -0.69 13.25 16 36 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 37 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 38 H 0.40 19.58 7.90 -92.71 -0.73 18.85 16 39 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 40 H 0.16 1.06 5.43 -2.91 -0.02 1.05 16 41 H 0.16 0.34 8.06 -2.91 -0.02 0.32 16 42 H 0.16 0.59 8.06 -2.91 -0.02 0.57 16 43 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -74.60 376.32 0.42 -74.18 By element: Atomic # 1 Polarization: 44.40 SS G_CDS: -1.11 Total: 43.28 kcal Atomic # 6 Polarization: 28.18 SS G_CDS: 6.39 Total: 34.57 kcal Atomic # 7 Polarization: -120.66 SS G_CDS: -6.64 Total: -127.31 kcal Atomic # 8 Polarization: -64.38 SS G_CDS: -1.01 Total: -65.38 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.77 Total: -3.51 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -74.60 0.42 -74.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345065057.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.274 kcal (2) G-P(sol) polarization free energy of solvation -74.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds