Wall clock time and date at job start Sat Apr 11 2020 05:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47247 * 2 1 4 4 C 1.50710 * 109.46817 * 240.00431 * 2 1 3 5 5 H 1.08002 * 119.99604 * 240.00003 * 4 2 1 6 6 C 1.37873 * 119.99924 * 59.99504 * 4 2 1 7 7 N 1.31507 * 120.00260 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99741 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47113 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.46897 * 120.00113 * 8 6 4 11 11 H 1.48491 * 109.47392 * 240.00489 * 8 6 4 12 12 N 1.46500 * 109.47228 * 120.00315 * 2 1 3 13 13 C 1.34769 * 119.99917 * 274.99410 * 12 2 1 14 14 O 1.21363 * 120.00183 * 0.02562 * 13 12 2 15 15 C 1.49345 * 120.00002 * 180.02562 * 13 12 2 16 16 O 1.21376 * 120.00024 * 0.02562 * 15 13 12 17 17 N 1.34778 * 119.99790 * 180.02562 * 15 13 12 18 18 C 1.39550 * 119.99700 * 185.28056 * 17 15 13 19 19 C 1.39061 * 119.95476 * 33.50203 * 18 17 15 20 20 C 1.37818 * 120.04818 * 180.02562 * 19 18 17 21 21 C 1.39456 * 119.95245 * 359.97438 * 20 19 18 22 22 C 1.48254 * 120.04816 * 180.02562 * 21 20 19 23 23 C 1.39383 * 119.73591 * 179.97438 * 22 21 20 24 24 C 1.38376 * 119.07061 * 180.02562 * 23 22 21 25 25 C 1.38810 * 118.51193 * 0.02562 * 24 23 22 26 26 C 1.38235 * 119.37785 * 0.27457 * 25 24 23 27 27 N 1.31775 * 120.89475 * 359.42705 * 26 25 24 28 28 C 1.39455 * 119.90715 * 0.27268 * 21 20 19 29 29 C 1.37822 * 119.95054 * 359.42824 * 28 21 20 30 30 H 1.08997 * 109.46839 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46771 * 299.99493 * 1 2 3 32 32 H 1.08998 * 109.47440 * 59.99663 * 1 2 3 33 33 H 0.97001 * 120.00251 * 179.97438 * 7 6 4 34 34 H 0.96997 * 119.99757 * 94.99940 * 12 2 1 35 35 H 0.97003 * 120.00291 * 5.28113 * 17 15 13 36 36 H 1.08001 * 119.97799 * 359.97094 * 19 18 17 37 37 H 1.07997 * 120.02309 * 180.02562 * 20 19 18 38 38 H 1.07993 * 120.46663 * 359.97438 * 23 22 21 39 39 H 1.07994 * 120.74746 * 180.02562 * 24 23 22 40 40 H 1.08001 * 120.31166 * 180.02562 * 25 24 23 41 41 H 1.08007 * 119.54949 * 179.70500 * 26 25 24 42 42 H 1.08000 * 120.02608 * 179.72469 * 28 21 20 43 43 H 1.07997 * 119.98013 * 180.29696 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3223 -1.1194 -4.0081 9 1 3.1473 -2.2862 -3.6040 10 1 1.1676 -1.5865 -4.8165 11 1 3.1470 -0.1857 -4.8162 12 7 2.0184 -0.6907 1.1961 13 6 2.1472 -0.0184 2.3570 14 8 1.8583 1.1591 2.4117 15 6 2.6456 -0.7223 3.5762 16 8 2.9351 -1.8998 3.5215 17 7 2.7740 -0.0500 4.7373 18 6 3.3424 -0.6766 5.8471 19 6 4.3527 -1.6161 5.6724 20 6 4.9151 -2.2364 6.7670 21 6 4.4707 -1.9210 8.0507 22 6 5.0745 -2.5866 9.2298 23 6 4.6258 -2.2661 10.5099 24 6 5.1994 -2.8953 11.6006 25 6 6.2049 -3.8255 11.3758 26 6 6.6058 -4.0909 10.0798 27 7 6.0389 -3.4817 9.0580 28 6 3.4539 -0.9824 8.2234 29 6 2.8985 -0.3598 7.1264 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 0.7093 1.1619 -3.4843 34 1 2.2491 -1.6318 1.1525 35 1 2.4712 0.8693 4.8016 36 1 4.6962 -1.8604 4.6781 37 1 5.6999 -2.9657 6.6309 38 1 3.8420 -1.5362 10.6485 39 1 4.8723 -2.6678 12.6044 40 1 6.6725 -4.3341 12.2059 41 1 7.3912 -4.8106 9.9020 42 1 3.1052 -0.7399 9.2164 43 1 2.1143 0.3707 7.2600 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354496589.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:41 Heat of formation + Delta-G solvation = -3.950450 kcal Electronic energy + Delta-G solvation = -26977.427925 eV Core-core repulsion = 22987.655755 eV Total energy + Delta-G solvation = -3989.772170 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.97108 -40.44305 -39.01367 -37.86585 -35.50170 -34.75740 -32.94234 -32.48097 -32.23053 -31.11451 -29.32515 -28.83891 -25.44211 -25.21402 -24.31355 -23.56221 -22.51919 -21.64649 -20.69034 -19.66003 -18.72449 -17.96546 -17.37004 -16.64010 -16.46722 -16.21719 -15.77320 -15.60406 -15.13702 -14.82900 -14.59056 -14.45370 -14.34291 -14.14479 -13.76674 -13.55514 -13.36416 -13.18248 -12.84562 -12.51489 -12.48680 -12.02999 -11.84489 -11.46453 -11.25911 -11.13676 -11.03241 -10.83339 -10.75256 -10.37232 -10.29701 -10.24659 -9.78713 -9.53805 -9.23308 -9.15302 -9.05149 -8.65437 -8.17797 -8.02650 -6.19623 -4.29189 0.22956 0.89944 1.23880 1.33063 1.89422 2.61022 3.21906 3.30061 3.31414 3.33898 3.63073 3.82019 3.86421 4.02415 4.29593 4.31632 4.47680 4.62137 4.71994 4.72890 4.80747 5.02665 5.12762 5.13758 5.17793 5.29762 5.35398 5.41669 5.64634 5.77555 5.86971 5.99330 6.11126 6.25243 6.35876 6.39614 6.68955 6.77456 6.81612 6.98834 7.03622 7.17825 7.36539 7.59631 7.64050 7.73947 7.85591 8.02352 8.39311 8.57366 8.81948 9.38040 10.86474 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027775 B = 0.001822 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.876457 B =15363.026190 C =16177.661243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.260 3.740 3 H 0.055 0.945 4 C -0.536 4.536 5 H 0.065 0.935 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.905 3.095 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.666 5.666 13 C 0.495 3.505 14 O -0.535 6.535 15 C 0.508 3.492 16 O -0.500 6.500 17 N -0.653 5.653 18 C 0.167 3.833 19 C -0.128 4.128 20 C -0.054 4.054 21 C -0.078 4.078 22 C 0.180 3.820 23 C -0.168 4.168 24 C -0.072 4.072 25 C -0.183 4.183 26 C 0.107 3.893 27 N -0.481 5.481 28 C -0.077 4.077 29 C -0.149 4.149 30 H 0.030 0.970 31 H 0.016 0.984 32 H 0.095 0.905 33 H 0.265 0.735 34 H 0.403 0.597 35 H 0.424 0.576 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.157 0.843 42 H 0.130 0.870 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.187 -5.328 27.621 29.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.160 3.840 3 H 0.073 0.927 4 C -0.574 4.574 5 H 0.083 0.917 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.732 3.268 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.315 5.315 13 C 0.273 3.727 14 O -0.414 6.414 15 C 0.291 3.709 16 O -0.373 6.373 17 N -0.299 5.299 18 C 0.072 3.928 19 C -0.148 4.148 20 C -0.073 4.073 21 C -0.080 4.080 22 C 0.044 3.956 23 C -0.188 4.188 24 C -0.098 4.098 25 C -0.203 4.203 26 C -0.051 4.051 27 N -0.190 5.190 28 C -0.097 4.097 29 C -0.169 4.169 30 H 0.049 0.951 31 H 0.035 0.965 32 H 0.113 0.887 33 H 0.075 0.925 34 H 0.237 0.763 35 H 0.262 0.738 36 H 0.158 0.842 37 H 0.157 0.843 38 H 0.155 0.845 39 H 0.153 0.847 40 H 0.152 0.848 41 H 0.174 0.826 42 H 0.148 0.852 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.358 -5.403 26.485 28.014 hybrid contribution -0.064 -0.267 0.140 0.308 sum 7.294 -5.670 26.625 28.182 Atomic orbital electron populations 1.22099 0.97764 0.99603 1.01235 1.19011 0.91498 0.94179 0.79340 0.92722 1.21227 1.32755 1.13485 0.89978 0.91658 1.24877 0.94678 0.94932 0.99122 1.69896 1.35752 1.22368 1.24004 0.86335 0.78650 0.79561 0.82256 1.19596 1.20797 1.20810 1.46512 1.61138 1.14543 1.09330 1.19634 0.81266 0.87290 0.84513 1.90735 1.50724 1.15207 1.84697 1.21014 0.78167 0.86960 0.84785 1.90754 1.46826 1.15142 1.84608 1.43279 1.59902 1.17533 1.09207 1.17940 0.92950 0.95465 0.86450 1.21217 0.95350 0.97800 1.00457 1.21172 0.98205 0.97525 0.90441 1.18443 0.98706 0.99111 0.91734 1.19791 0.91759 0.92192 0.91843 1.22107 1.01958 1.01990 0.92742 1.21538 0.94583 0.94317 0.99318 1.22180 0.99263 1.00078 0.98791 1.22753 0.97464 0.96798 0.88127 1.67664 1.08504 1.07361 1.35428 1.20927 0.95100 0.95084 0.98573 1.20806 1.01968 1.03481 0.90650 0.95064 0.96454 0.88687 0.92484 0.76277 0.73765 0.84179 0.84350 0.84478 0.84720 0.84799 0.82559 0.85201 0.84924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 9.26 37.16 0.34 -3.24 16 2 C 0.26 6.48 2.56 -69.07 -0.18 6.30 16 3 H 0.05 1.53 7.58 -51.93 -0.39 1.13 16 4 C -0.54 -14.03 8.73 -34.44 -0.30 -14.33 16 5 H 0.07 1.66 7.74 -52.49 -0.41 1.25 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.25 11.32 55.43 0.63 -23.62 16 8 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 9 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 N -0.67 -14.09 5.06 -55.39 -0.28 -14.37 16 13 C 0.49 9.73 7.85 -11.64 -0.09 9.63 16 14 O -0.53 -11.56 16.15 5.49 0.09 -11.47 16 15 C 0.51 8.48 7.62 -11.63 -0.09 8.39 16 16 O -0.50 -9.00 14.16 5.47 0.08 -8.92 16 17 N -0.65 -8.82 5.31 -10.28 -0.05 -8.87 16 18 C 0.17 2.11 6.27 -83.73 -0.53 1.59 16 19 C -0.13 -1.71 8.63 -39.43 -0.34 -2.05 16 20 C -0.05 -0.66 9.56 -39.28 -0.38 -1.03 16 21 C -0.08 -0.86 5.88 -104.87 -0.62 -1.48 16 22 C 0.18 1.87 6.73 -82.95 -0.56 1.31 16 23 C -0.17 -1.31 9.46 -39.10 -0.37 -1.68 16 24 C -0.07 -0.45 10.17 -39.32 -0.40 -0.85 16 25 C -0.18 -1.15 10.11 -39.37 -0.40 -1.55 16 26 C 0.11 0.85 11.17 -17.58 -0.20 0.66 16 27 N -0.48 -5.21 9.43 -9.79 -0.09 -5.30 16 28 C -0.08 -0.71 9.41 -39.28 -0.37 -1.08 16 29 C -0.15 -1.49 9.95 -39.43 -0.39 -1.88 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 33 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 34 H 0.40 7.94 8.01 -40.82 -0.33 7.62 16 35 H 0.42 5.00 8.29 -40.82 -0.34 4.66 16 36 H 0.14 2.04 6.41 -52.49 -0.34 1.70 16 37 H 0.14 1.63 7.53 -52.49 -0.40 1.24 16 38 H 0.14 0.75 6.18 -52.49 -0.32 0.42 16 39 H 0.13 0.48 8.06 -52.49 -0.42 0.05 16 40 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 41 H 0.16 0.84 8.06 -52.48 -0.42 0.42 16 42 H 0.13 0.81 6.17 -52.49 -0.32 0.48 16 43 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 371.75 15.07 5.60 5.60 Total: -1.00 -31.27 371.75 -8.83 -40.10 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -4.83 Total: 11.01 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -4.95 Total: 0.41 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: 0.20 Total: -52.17 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: 0.17 Total: -20.40 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.27 -8.83 -40.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354496589.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.153 kcal (2) G-P(sol) polarization free energy of solvation -31.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds