Wall clock time and date at job start Sat Apr 11 2020 05:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46789 * 2 1 4 4 N 1.46500 * 109.47386 * 119.99398 * 2 1 3 5 5 C 1.34772 * 120.00561 * 275.00168 * 4 2 1 6 6 O 1.21686 * 119.99787 * 0.02562 * 5 4 2 7 7 C 1.46372 * 120.00232 * 179.97438 * 5 4 2 8 8 H 1.07993 * 119.99999 * 5.03330 * 7 5 4 9 9 C 1.40049 * 120.00152 * 185.03116 * 7 5 4 10 10 N 1.30673 * 119.99838 * 354.96935 * 9 7 5 11 11 Si 1.86800 * 120.00339 * 174.96940 * 9 7 5 12 12 H 1.48494 * 109.47061 * 94.99624 * 11 9 7 13 13 H 1.48504 * 109.47202 * 215.00137 * 11 9 7 14 14 H 1.48504 * 109.46657 * 334.99826 * 11 9 7 15 15 C 1.50691 * 109.47204 * 239.99809 * 2 1 3 16 16 C 1.38294 * 119.92992 * 99.99620 * 15 2 1 17 17 C 1.38105 * 120.07473 * 180.02562 * 16 15 2 18 18 C 1.38893 * 119.92476 * 0.02562 * 17 16 15 19 19 N 1.39837 * 120.06986 * 180.02562 * 18 17 16 20 20 C 1.34780 * 120.00117 * 35.09378 * 19 18 17 21 21 O 1.21527 * 120.00008 * 355.36628 * 20 19 18 22 22 C 1.48113 * 120.00021 * 175.09999 * 20 19 18 23 23 C 1.39824 * 120.92414 * 359.97438 * 22 20 19 24 24 C 1.38144 * 119.00180 * 179.77786 * 23 22 20 25 25 N 1.31818 * 120.89301 * 0.51332 * 24 23 22 26 26 C 1.31816 * 122.05467 * 359.74077 * 25 24 23 27 27 C 1.38146 * 120.89415 * 359.97438 * 26 25 24 28 28 C 1.38891 * 119.85849 * 0.27134 * 18 17 16 29 29 C 1.38107 * 119.92615 * 359.44881 * 28 18 17 30 30 H 1.08995 * 109.47157 * 59.99777 * 1 2 3 31 31 H 1.09005 * 109.47156 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46955 * 299.99849 * 1 2 3 33 33 H 0.97005 * 119.99596 * 94.99706 * 4 2 1 34 34 H 0.97006 * 120.00059 * 180.02562 * 10 9 7 35 35 H 1.08003 * 119.95917 * 0.02562 * 16 15 2 36 36 H 1.08000 * 120.03421 * 179.97438 * 17 16 15 37 37 H 0.97001 * 120.00270 * 215.09206 * 19 18 17 38 38 H 1.07999 * 120.50350 * 0.02562 * 23 22 20 39 39 H 1.07999 * 119.55229 * 180.22673 * 24 23 22 40 40 H 1.08001 * 119.55333 * 179.97438 * 26 25 24 41 41 H 1.08007 * 120.49518 * 179.97438 * 27 26 25 42 42 H 1.07999 * 120.03756 * 179.70689 * 28 18 17 43 43 H 1.07995 * 119.96781 * 180.27529 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1471 -0.0181 2.3571 6 8 1.8573 1.1624 2.4119 7 6 2.6346 -0.7082 3.5524 8 1 2.9679 -1.7333 3.4859 9 6 2.6689 -0.0391 4.7823 10 7 2.3594 1.2289 4.8451 11 14 3.1569 -0.9593 6.3329 12 1 4.6066 -0.7644 6.5886 13 1 2.3767 -0.4382 7.4840 14 1 2.8752 -2.4069 6.1588 15 6 2.0323 -0.7104 -1.2304 16 6 2.4585 0.0211 -2.3239 17 6 2.9189 -0.6269 -3.4532 18 6 2.9532 -2.0149 -3.4901 19 7 3.4193 -2.6741 -4.6319 20 6 4.4240 -2.1409 -5.3549 21 8 4.8682 -1.0477 -5.0643 22 6 4.9908 -2.8899 -6.5001 23 6 4.4987 -4.1517 -6.8478 24 6 5.0535 -4.8132 -7.9262 25 7 6.0392 -4.2748 -8.6163 26 6 6.5359 -3.0905 -8.3193 27 6 6.0366 -2.3573 -7.2602 28 6 2.5187 -2.7467 -2.3926 29 6 2.0648 -2.0925 -1.2641 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2491 -1.6317 1.1527 34 1 2.3835 1.6924 5.6968 35 1 2.4311 1.1004 -2.2946 36 1 3.2512 -0.0549 -4.3069 37 1 3.0196 -3.5152 -4.9035 38 1 3.6942 -4.6007 -6.2842 39 1 4.6777 -5.7866 -8.2048 40 1 7.3440 -2.6879 -8.9119 41 1 6.4487 -1.3877 -7.0223 42 1 2.5396 -3.8262 -2.4199 43 1 1.7310 -2.6609 -0.4087 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356232697.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:48 Heat of formation + Delta-G solvation = -32.395149 kcal Electronic energy + Delta-G solvation = -27154.972648 eV Core-core repulsion = 23163.967023 eV Total energy + Delta-G solvation = -3991.005625 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.05521 -40.91140 -40.07191 -39.01122 -36.73403 -35.31161 -34.50129 -33.72407 -32.32267 -32.05385 -31.62010 -29.58677 -28.17450 -26.25383 -24.70285 -24.26973 -24.04433 -22.52921 -21.88872 -20.90223 -19.67164 -19.43616 -18.51031 -17.55087 -17.33763 -16.95901 -16.75234 -16.55147 -16.46837 -16.18588 -15.72495 -15.25967 -15.17309 -15.07758 -14.79571 -14.73920 -14.58784 -14.31358 -14.24422 -14.11376 -13.57528 -13.34859 -13.10630 -12.73333 -12.72805 -12.60978 -12.56437 -12.38299 -11.99759 -11.87291 -11.52509 -11.19537 -11.04830 -10.92165 -10.56536 -10.22443 -9.91978 -9.84223 -9.48489 -9.11545 -8.27926 -6.83523 -0.48824 0.07059 0.26496 0.42351 1.40460 1.41727 1.57691 1.64434 1.77908 2.25329 2.49080 2.72558 2.82905 3.16194 3.30890 3.49536 3.63421 3.75180 3.76505 3.89471 3.91025 4.02123 4.04655 4.33037 4.40825 4.46503 4.52686 4.55135 4.59988 4.75302 4.79045 4.79956 4.97374 4.98387 5.08056 5.15682 5.27001 5.30865 5.33691 5.43206 5.57865 5.65491 5.90450 5.98539 6.23505 6.25747 6.31531 6.87934 6.88380 6.88820 7.57469 8.51684 8.69371 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021138 B = 0.001918 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.311374 B =14595.004032 C =15044.403549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.189 3.811 3 H 0.046 0.954 4 N -0.746 5.746 5 C 0.540 3.460 6 O -0.631 6.631 7 C -0.573 4.573 8 H 0.088 0.912 9 C 0.027 3.973 10 N -0.822 5.822 11 Si 0.997 3.003 12 H -0.265 1.265 13 H -0.273 1.273 14 H -0.246 1.246 15 C -0.096 4.096 16 C -0.106 4.106 17 C -0.126 4.126 18 C 0.130 3.870 19 N -0.646 5.646 20 C 0.555 3.445 21 O -0.549 6.549 22 C -0.102 4.102 23 C -0.129 4.129 24 C 0.095 3.905 25 N -0.491 5.491 26 C 0.094 3.906 27 C -0.126 4.126 28 C -0.122 4.122 29 C -0.095 4.095 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.028 0.972 33 H 0.393 0.607 34 H 0.273 0.727 35 H 0.122 0.878 36 H 0.129 0.871 37 H 0.430 0.570 38 H 0.176 0.824 39 H 0.195 0.805 40 H 0.184 0.816 41 H 0.144 0.856 42 H 0.166 0.834 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.360 -17.389 -25.697 31.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.084 3.916 3 H 0.064 0.936 4 N -0.401 5.401 5 C 0.344 3.656 6 O -0.518 6.518 7 C -0.610 4.610 8 H 0.106 0.894 9 C -0.188 4.188 10 N -0.451 5.451 11 Si 0.816 3.184 12 H -0.189 1.189 13 H -0.198 1.198 14 H -0.169 1.169 15 C -0.097 4.097 16 C -0.125 4.125 17 C -0.146 4.146 18 C 0.036 3.964 19 N -0.293 5.293 20 C 0.344 3.656 21 O -0.427 6.427 22 C -0.113 4.113 23 C -0.149 4.149 24 C -0.062 4.062 25 N -0.201 5.201 26 C -0.062 4.062 27 C -0.147 4.147 28 C -0.142 4.142 29 C -0.114 4.114 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.047 0.953 33 H 0.228 0.772 34 H 0.083 0.917 35 H 0.140 0.860 36 H 0.147 0.853 37 H 0.271 0.729 38 H 0.193 0.807 39 H 0.212 0.788 40 H 0.201 0.799 41 H 0.161 0.839 42 H 0.184 0.816 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.804 -16.092 -26.115 30.802 hybrid contribution -0.204 0.352 1.450 1.506 sum 2.600 -15.740 -24.664 29.374 Atomic orbital electron populations 1.22035 0.94624 1.02360 1.00996 1.19390 0.94079 0.95121 0.83046 0.93609 1.45939 1.72111 1.13288 1.08787 1.18585 0.77650 0.86005 0.83337 1.90550 1.57196 1.18478 1.85574 1.21418 1.46196 1.00581 0.92782 0.89437 1.26982 0.92326 0.95229 1.04217 1.70200 1.36475 1.11155 1.27302 0.85018 0.78652 0.79379 0.75306 1.18949 1.19811 1.16928 1.19986 1.00181 0.94952 0.94624 1.20970 0.98416 1.00228 0.92877 1.21171 1.00511 0.93910 0.99001 1.17727 0.99467 0.91373 0.87828 1.43104 1.34796 1.26502 1.24875 1.18688 0.79080 0.85291 0.82519 1.90813 1.61037 1.21586 1.69245 1.20212 0.98656 0.96397 0.96011 1.22697 1.00852 0.92944 0.98379 1.23381 0.91236 1.00827 0.90720 1.67641 1.10781 1.12129 1.29508 1.23156 0.98763 0.89774 0.94487 1.22448 0.95257 1.01816 0.95144 1.21111 1.01153 1.01323 0.90568 1.20951 0.98968 0.92929 0.98578 0.90712 0.91087 0.95312 0.77160 0.91664 0.86033 0.85332 0.72944 0.80718 0.78816 0.79863 0.83854 0.81631 0.84218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.07 9.46 71.98 0.68 -4.39 16 2 C 0.19 7.52 2.77 44.24 0.12 7.64 16 3 H 0.05 2.15 7.43 -2.38 -0.02 2.14 16 4 N -0.75 -33.75 5.02 -450.41 -2.26 -36.01 16 5 C 0.54 31.63 7.71 86.36 0.67 32.29 16 6 O -0.63 -42.78 14.70 -4.30 -0.06 -42.84 16 7 C -0.57 -32.68 9.54 24.83 0.24 -32.44 16 8 H 0.09 4.45 7.85 -2.91 -0.02 4.43 16 9 C 0.03 1.54 5.50 85.30 0.47 2.01 16 10 N -0.82 -50.94 11.85 21.84 0.26 -50.68 16 11 Si 1.00 41.20 29.56 68.60 2.03 43.23 16 12 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 13 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 14 H -0.25 -9.34 7.11 99.48 0.71 -8.63 16 15 C -0.10 -3.01 4.96 -19.84 -0.10 -3.11 16 16 C -0.11 -3.20 9.66 22.25 0.21 -2.98 16 17 C -0.13 -3.43 8.69 22.40 0.19 -3.24 16 18 C 0.13 2.80 6.30 38.18 0.24 3.04 16 19 N -0.65 -9.69 5.29 -305.87 -1.62 -11.30 16 20 C 0.56 10.88 7.64 86.86 0.66 11.54 16 21 O -0.55 -15.67 13.88 -3.80 -0.05 -15.72 16 22 C -0.10 -1.44 5.91 -19.89 -0.12 -1.56 16 23 C -0.13 -0.94 9.61 22.63 0.22 -0.73 16 24 C 0.09 0.77 11.17 84.67 0.95 1.72 16 25 N -0.49 -6.49 10.33 -196.01 -2.03 -8.52 16 26 C 0.09 1.15 11.17 84.67 0.95 2.09 16 27 C -0.13 -1.83 9.68 22.63 0.22 -1.62 16 28 C -0.12 -2.33 9.97 22.40 0.22 -2.10 16 29 C -0.10 -2.37 9.05 22.25 0.20 -2.17 16 30 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 32 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.39 15.20 6.85 -92.70 -0.63 14.57 16 34 H 0.27 15.35 8.29 -92.70 -0.77 14.59 16 35 H 0.12 3.66 8.03 -2.91 -0.02 3.64 16 36 H 0.13 3.69 6.23 -2.91 -0.02 3.68 16 37 H 0.43 2.56 6.98 -92.71 -0.65 1.91 16 38 H 0.18 -0.10 6.55 -2.91 -0.02 -0.12 16 39 H 0.20 0.25 8.06 -2.91 -0.02 0.23 16 40 H 0.18 1.28 8.06 -2.91 -0.02 1.26 16 41 H 0.14 2.19 7.74 -2.91 -0.02 2.17 16 42 H 0.17 1.80 8.06 -2.91 -0.02 1.77 16 43 H 0.14 3.15 6.91 -2.91 -0.02 3.13 16 Total: -1.00 -87.58 372.20 2.09 -85.49 By element: Atomic # 1 Polarization: 30.56 SS G_CDS: -0.20 Total: 30.36 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 6.03 Total: 6.00 kcal Atomic # 7 Polarization: -100.87 SS G_CDS: -5.65 Total: -106.51 kcal Atomic # 8 Polarization: -58.45 SS G_CDS: -0.12 Total: -58.56 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Total: -87.58 2.09 -85.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356232697.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.096 kcal (2) G-P(sol) polarization free energy of solvation -87.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds