Wall clock time and date at job start Sat Apr 11 2020 05:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46898 * 2 1 4 4 N 1.46495 * 109.47286 * 239.99628 * 2 1 3 5 5 C 1.34783 * 119.99785 * 85.00148 * 4 2 1 6 6 O 1.21689 * 120.00099 * 359.97438 * 5 4 2 7 7 C 1.46372 * 120.00027 * 180.02562 * 5 4 2 8 8 H 1.08008 * 120.00133 * 5.02591 * 7 5 4 9 9 C 1.40050 * 120.00341 * 185.02708 * 7 5 4 10 10 N 1.30674 * 119.99359 * 354.96745 * 9 7 5 11 11 Si 1.86797 * 120.00423 * 174.96388 * 9 7 5 12 12 H 1.48507 * 109.46898 * 94.99901 * 11 9 7 13 13 H 1.48493 * 109.47253 * 214.99946 * 11 9 7 14 14 H 1.48502 * 109.47015 * 335.00357 * 11 9 7 15 15 C 1.50702 * 109.47291 * 119.99820 * 2 1 3 16 16 C 1.38283 * 119.92684 * 260.00427 * 15 2 1 17 17 C 1.38108 * 120.07416 * 179.97438 * 16 15 2 18 18 C 1.38897 * 119.92614 * 359.97438 * 17 16 15 19 19 N 1.39835 * 120.07241 * 180.02562 * 18 17 16 20 20 C 1.34776 * 119.99678 * 35.08538 * 19 18 17 21 21 O 1.21522 * 120.00536 * 355.64494 * 20 19 18 22 22 C 1.48116 * 119.99614 * 175.64217 * 20 19 18 23 23 C 1.39833 * 120.92462 * 359.72707 * 22 20 19 24 24 C 1.38145 * 119.00060 * 179.72981 * 23 22 20 25 25 N 1.31819 * 120.89456 * 0.54776 * 24 23 22 26 26 C 1.31819 * 122.05115 * 359.72185 * 25 24 23 27 27 C 1.38135 * 120.90143 * 359.97438 * 26 25 24 28 28 C 1.38892 * 119.85250 * 0.27818 * 18 17 16 29 29 C 1.38105 * 119.92922 * 359.44538 * 28 18 17 30 30 H 1.09001 * 109.46898 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47115 * 299.99833 * 1 2 3 32 32 H 1.08995 * 109.46979 * 60.00300 * 1 2 3 33 33 H 0.96996 * 120.00859 * 265.00206 * 4 2 1 34 34 H 0.97004 * 119.99501 * 179.97438 * 10 9 7 35 35 H 1.08007 * 119.96525 * 359.94993 * 16 15 2 36 36 H 1.08004 * 120.03849 * 179.97438 * 17 16 15 37 37 H 0.96998 * 119.99636 * 215.36301 * 19 18 17 38 38 H 1.08003 * 120.49929 * 359.96579 * 23 22 20 39 39 H 1.07992 * 119.55157 * 180.27448 * 24 23 22 40 40 H 1.08004 * 119.55035 * 179.97438 * 26 25 24 41 41 H 1.07998 * 120.50192 * 180.02562 * 27 26 25 42 42 H 1.08000 * 120.03613 * 179.70686 * 28 18 17 43 43 H 1.08002 * 119.96715 * 180.27358 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8572 1.1623 -2.4119 7 6 2.6345 -0.7085 -3.5523 8 1 2.8137 -1.7732 -3.5258 9 6 2.8685 0.0118 -4.7304 10 7 2.5593 1.2799 -4.7931 11 14 3.6226 -0.8401 -6.2119 12 1 2.5427 -1.2948 -7.1243 13 1 4.5104 0.1092 -6.9301 14 1 4.4142 -2.0122 -5.7591 15 6 2.0324 -0.7104 1.2305 16 6 2.4585 0.0213 2.3238 17 6 2.9189 -0.6266 3.4532 18 6 2.9533 -2.0147 3.4903 19 7 3.4184 -2.6738 4.6325 20 6 3.1762 -2.1579 5.8538 21 8 2.6233 -1.0809 5.9599 22 6 3.5838 -2.9037 7.0669 23 6 4.2160 -4.1470 6.9675 24 6 4.5843 -4.8055 8.1247 25 7 4.3375 -4.2821 9.3091 26 6 3.7392 -3.1157 9.4475 27 6 3.3425 -2.3864 8.3435 28 6 2.5295 -2.7464 2.3885 29 6 2.0648 -2.0925 1.2644 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.2490 -1.6318 -1.1526 34 1 2.7218 1.7788 -5.6090 35 1 2.4315 1.1006 2.2944 36 1 3.2520 -0.0546 4.3067 37 1 3.9189 -3.5002 4.5455 38 1 4.4168 -4.5841 6.0005 39 1 5.0771 -5.7641 8.0582 40 1 3.5565 -2.7249 10.4377 41 1 2.8532 -1.4313 8.4643 42 1 2.5594 -3.8257 2.4124 43 1 1.7310 -2.6610 0.4089 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356232699.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:52 Heat of formation + Delta-G solvation = -32.173477 kcal Electronic energy + Delta-G solvation = -27124.930675 eV Core-core repulsion = 23133.934662 eV Total energy + Delta-G solvation = -3990.996013 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.05223 -40.91036 -40.06820 -39.00439 -36.72927 -35.30721 -34.49347 -33.72099 -32.32137 -32.05398 -31.61771 -29.59078 -28.16771 -26.25284 -24.70370 -24.27065 -24.04169 -22.52606 -21.88407 -20.89876 -19.66869 -19.42820 -18.50797 -17.54433 -17.33317 -16.94706 -16.74304 -16.54213 -16.49821 -16.18482 -15.72354 -15.29077 -15.18203 -15.01955 -14.78284 -14.74857 -14.57189 -14.29529 -14.21909 -14.12953 -13.61936 -13.35646 -13.08050 -12.76307 -12.72134 -12.63991 -12.57839 -12.33676 -11.99945 -11.83231 -11.50759 -11.22578 -11.04445 -10.91468 -10.56408 -10.22339 -9.91559 -9.83560 -9.48449 -9.11385 -8.27162 -6.82545 -0.48683 0.07224 0.26632 0.42392 1.41195 1.42585 1.58469 1.66014 1.77194 2.25933 2.49965 2.72165 2.82698 3.16297 3.31512 3.49682 3.63860 3.75118 3.76873 3.89632 3.91155 4.02074 4.04716 4.32594 4.40587 4.46228 4.52363 4.54744 4.59619 4.75507 4.77832 4.79876 4.97028 4.97877 5.07826 5.15093 5.26909 5.29813 5.34406 5.42993 5.57993 5.65363 5.91236 5.98469 6.23356 6.26696 6.31891 6.88019 6.88443 6.89291 7.58692 8.52579 8.70227 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025876 B = 0.001870 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.831030 B =14969.986689 C =15653.585568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.190 3.810 3 H 0.047 0.953 4 N -0.745 5.745 5 C 0.540 3.460 6 O -0.631 6.631 7 C -0.573 4.573 8 H 0.089 0.911 9 C 0.028 3.972 10 N -0.822 5.822 11 Si 0.997 3.003 12 H -0.263 1.263 13 H -0.275 1.275 14 H -0.247 1.247 15 C -0.096 4.096 16 C -0.106 4.106 17 C -0.126 4.126 18 C 0.130 3.870 19 N -0.647 5.647 20 C 0.556 3.444 21 O -0.548 6.548 22 C -0.102 4.102 23 C -0.130 4.130 24 C 0.095 3.905 25 N -0.491 5.491 26 C 0.094 3.906 27 C -0.125 4.125 28 C -0.122 4.122 29 C -0.095 4.095 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.029 0.971 33 H 0.394 0.606 34 H 0.273 0.727 35 H 0.122 0.878 36 H 0.129 0.871 37 H 0.429 0.571 38 H 0.174 0.826 39 H 0.194 0.806 40 H 0.185 0.815 41 H 0.145 0.855 42 H 0.166 0.834 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.690 -17.247 24.871 30.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.085 3.915 3 H 0.065 0.935 4 N -0.400 5.400 5 C 0.344 3.656 6 O -0.518 6.518 7 C -0.609 4.609 8 H 0.107 0.893 9 C -0.187 4.187 10 N -0.452 5.452 11 Si 0.816 3.184 12 H -0.187 1.187 13 H -0.200 1.200 14 H -0.170 1.170 15 C -0.097 4.097 16 C -0.125 4.125 17 C -0.146 4.146 18 C 0.036 3.964 19 N -0.294 5.294 20 C 0.345 3.655 21 O -0.425 6.425 22 C -0.113 4.113 23 C -0.150 4.150 24 C -0.062 4.062 25 N -0.201 5.201 26 C -0.062 4.062 27 C -0.145 4.145 28 C -0.142 4.142 29 C -0.114 4.114 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.049 0.951 33 H 0.229 0.771 34 H 0.083 0.917 35 H 0.140 0.860 36 H 0.147 0.853 37 H 0.270 0.730 38 H 0.191 0.809 39 H 0.211 0.789 40 H 0.202 0.798 41 H 0.163 0.837 42 H 0.183 0.817 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.329 -15.958 25.621 30.493 hybrid contribution 0.091 0.350 -1.539 1.581 sum 4.421 -15.608 24.082 29.036 Atomic orbital electron populations 1.22045 0.94958 1.02258 1.00929 1.19366 0.93835 0.95212 0.83122 0.93452 1.45926 1.72088 1.13307 1.08701 1.18597 0.77396 0.86084 0.83493 1.90554 1.56635 1.18745 1.85878 1.21424 1.47623 0.96528 0.95347 0.89314 1.26980 0.93560 0.95109 1.03088 1.70204 1.36767 1.10196 1.28016 0.85020 0.78527 0.78723 0.76101 1.18744 1.20009 1.16978 1.19983 1.00240 0.94954 0.94556 1.20971 0.98658 1.00238 0.92621 1.21172 1.01447 0.93843 0.98121 1.17725 0.99759 0.91293 0.87616 1.43124 1.55084 1.27953 1.03210 1.18663 0.78081 0.85042 0.83700 1.90801 1.42583 1.22244 1.86889 1.20220 1.01567 0.96520 0.92973 1.22696 0.96444 0.93147 1.02692 1.23364 0.95756 1.00637 0.86435 1.67644 1.11319 1.12356 1.28761 1.23167 0.93326 0.89839 0.99865 1.22448 0.98406 1.01687 0.92000 1.21113 0.99811 1.01283 0.91960 1.20952 0.98833 0.92930 0.98708 0.91241 0.91039 0.95139 0.77094 0.91692 0.86022 0.85333 0.73026 0.80856 0.78921 0.79807 0.83692 0.81654 0.84212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.25 9.46 71.98 0.68 -4.57 16 2 C 0.19 7.56 2.77 44.25 0.12 7.68 16 3 H 0.05 2.21 7.43 -2.39 -0.02 2.20 16 4 N -0.75 -33.28 5.02 -450.40 -2.26 -35.54 16 5 C 0.54 31.31 7.71 86.36 0.67 31.98 16 6 O -0.63 -42.51 14.70 -4.31 -0.06 -42.57 16 7 C -0.57 -32.26 9.54 24.83 0.24 -32.02 16 8 H 0.09 4.43 7.85 -2.91 -0.02 4.41 16 9 C 0.03 1.54 5.50 85.30 0.47 2.00 16 10 N -0.82 -50.64 11.85 21.84 0.26 -50.38 16 11 Si 1.00 40.75 29.56 68.60 2.03 42.77 16 12 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 13 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 14 H -0.25 -9.27 7.11 99.48 0.71 -8.56 16 15 C -0.10 -3.01 4.96 -19.84 -0.10 -3.11 16 16 C -0.11 -3.20 9.66 22.25 0.21 -2.98 16 17 C -0.13 -3.43 8.69 22.40 0.19 -3.24 16 18 C 0.13 2.81 6.30 38.18 0.24 3.05 16 19 N -0.65 -9.74 5.29 -305.87 -1.62 -11.36 16 20 C 0.56 10.60 7.64 86.87 0.66 11.26 16 21 O -0.55 -14.99 13.89 -3.79 -0.05 -15.04 16 22 C -0.10 -1.41 5.91 -19.88 -0.12 -1.52 16 23 C -0.13 -0.96 9.61 22.63 0.22 -0.74 16 24 C 0.09 0.77 11.17 84.67 0.95 1.72 16 25 N -0.49 -6.40 10.34 -196.02 -2.03 -8.42 16 26 C 0.09 1.10 11.17 84.67 0.95 2.05 16 27 C -0.12 -1.73 9.68 22.63 0.22 -1.51 16 28 C -0.12 -2.34 9.97 22.39 0.22 -2.11 16 29 C -0.10 -2.38 9.05 22.25 0.20 -2.18 16 30 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.39 14.92 6.85 -92.71 -0.63 14.29 16 34 H 0.27 15.25 8.29 -92.71 -0.77 14.49 16 35 H 0.12 3.66 8.03 -2.91 -0.02 3.64 16 36 H 0.13 3.69 6.23 -2.91 -0.02 3.67 16 37 H 0.43 2.78 6.98 -92.71 -0.65 2.14 16 38 H 0.17 -0.03 6.55 -2.91 -0.02 -0.05 16 39 H 0.19 0.30 8.06 -2.91 -0.02 0.27 16 40 H 0.18 1.18 8.06 -2.91 -0.02 1.15 16 41 H 0.15 2.07 7.74 -2.91 -0.02 2.05 16 42 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 43 H 0.14 3.15 6.91 -2.91 -0.02 3.13 16 Total: -1.00 -86.30 372.21 2.09 -84.21 By element: Atomic # 1 Polarization: 30.79 SS G_CDS: -0.20 Total: 30.58 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: 6.03 Total: 5.75 kcal Atomic # 7 Polarization: -100.06 SS G_CDS: -5.65 Total: -105.70 kcal Atomic # 8 Polarization: -57.50 SS G_CDS: -0.12 Total: -57.61 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.77 kcal Total: -86.30 2.09 -84.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356232699.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.033 kcal (2) G-P(sol) polarization free energy of solvation -86.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds