Wall clock time and date at job start Sat Apr 11 2020 05:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.47018 * 2 1 4 4 C 1.50697 * 109.46950 * 119.99743 * 2 1 3 5 5 H 1.07999 * 119.99850 * 119.99654 * 4 2 1 6 6 C 1.37875 * 120.00204 * 300.00542 * 4 2 1 7 7 N 1.31517 * 120.00265 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00108 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47158 * 59.99697 * 8 6 4 10 10 H 1.48507 * 109.47080 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.46831 * 299.99319 * 8 6 4 12 12 N 1.46497 * 109.46883 * 239.99949 * 2 1 3 13 13 C 1.46505 * 120.00152 * 299.99855 * 12 2 1 14 14 C 1.34776 * 119.99692 * 120.00647 * 12 2 1 15 15 O 1.21284 * 120.00407 * 359.97438 * 14 12 2 16 16 C 1.50710 * 119.99755 * 179.97438 * 14 12 2 17 17 C 1.50698 * 109.46963 * 179.97438 * 16 14 12 18 18 C 1.33325 * 122.71193 * 85.03706 * 17 16 14 19 19 S 1.76166 * 108.09631 * 179.97438 * 18 17 16 20 20 C 1.70965 * 90.35472 * 359.97438 * 19 18 17 21 21 N 1.38617 * 124.94540 * 180.02562 * 20 19 18 22 22 C 1.47012 * 110.99854 * 123.59690 * 21 20 19 23 23 C 1.53102 * 109.25581 * 177.60490 * 22 21 20 24 24 O 1.43007 * 109.25672 * 56.85218 * 23 22 21 25 25 C 1.43019 * 113.73698 * 301.32481 * 24 23 22 26 26 C 1.47015 * 111.00137 * 359.95973 * 21 20 19 27 27 N 1.29677 * 110.10409 * 0.02562 * 20 19 18 28 28 H 1.09003 * 109.47318 * 300.00037 * 1 2 3 29 29 H 1.09002 * 109.46953 * 60.00230 * 1 2 3 30 30 H 1.08994 * 109.47018 * 179.97438 * 1 2 3 31 31 H 0.96999 * 120.00521 * 180.02562 * 7 6 4 32 32 H 1.09007 * 109.47083 * 270.00618 * 13 12 2 33 33 H 1.08997 * 109.46704 * 30.00064 * 13 12 2 34 34 H 1.08994 * 109.46841 * 150.00481 * 13 12 2 35 35 H 1.09004 * 109.47054 * 59.99450 * 16 14 12 36 36 H 1.09004 * 109.46943 * 299.99447 * 16 14 12 37 37 H 1.08002 * 125.95164 * 359.94211 * 18 17 16 38 38 H 1.08998 * 109.50845 * 297.54406 * 22 21 20 39 39 H 1.08999 * 109.50458 * 57.67177 * 22 21 20 40 40 H 1.08998 * 109.50344 * 296.91150 * 23 22 21 41 41 H 1.09001 * 109.53738 * 176.80928 * 23 22 21 42 42 H 1.09000 * 109.50707 * 298.73360 * 25 24 23 43 43 H 1.09001 * 109.54190 * 178.62852 * 25 24 23 44 44 H 1.08999 * 109.50789 * 302.32819 * 26 21 20 45 45 H 1.09000 * 109.50285 * 62.45984 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9434 0.8302 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.8074 -1.1189 4.0078 10 1 1.8277 -0.4191 5.2205 11 1 1.8279 -2.5197 4.0082 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 6 2.7933 -0.0356 -2.0832 15 8 3.0860 1.1256 -1.8915 16 6 3.2961 -0.7463 -3.3135 17 6 4.1328 0.2011 -4.1341 18 6 5.4302 0.4023 -3.9021 19 16 6.0212 1.5732 -5.0782 20 6 4.4621 1.6796 -5.7716 21 7 4.1258 2.4834 -6.8497 22 6 3.5423 1.6869 -7.9389 23 6 3.1315 2.6190 -9.0819 24 8 4.2706 3.3700 -9.5106 25 6 4.8636 4.1580 -8.4748 26 6 5.2920 3.2416 -7.3257 27 7 3.6401 0.8988 -5.1422 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.7093 1.1618 3.4844 32 1 2.4157 -2.7378 -0.9716 33 1 0.6904 -2.3002 -0.9846 34 1 1.6238 -2.2852 -2.5001 35 1 2.4484 -1.0892 -3.9069 36 1 3.9018 -1.6024 -3.0165 37 1 6.0165 -0.0699 -3.1278 38 1 4.2793 0.9700 -8.3008 39 1 2.6656 1.1541 -7.5708 40 1 2.3555 3.3010 -8.7344 41 1 2.7505 2.0282 -9.9150 42 1 4.1380 4.8848 -8.1097 43 1 5.7357 4.6804 -8.8681 44 1 5.6924 3.8436 -6.5100 45 1 6.0570 2.5495 -7.6778 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367393849.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:59 Heat of formation + Delta-G solvation = -12.990095 kcal Electronic energy + Delta-G solvation = -27153.875686 eV Core-core repulsion = 23299.155479 eV Total energy + Delta-G solvation = -3854.720207 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.61365 -39.64306 -38.55854 -36.22611 -35.23183 -32.91836 -31.80632 -31.50342 -29.56787 -28.01088 -27.46413 -26.06373 -25.18379 -24.70885 -23.64527 -21.43868 -20.97313 -19.58448 -18.62685 -18.00869 -16.86491 -16.62183 -16.50942 -16.19783 -15.74918 -15.52838 -15.42678 -15.18439 -15.00129 -14.61967 -14.34572 -13.80843 -13.61189 -13.19143 -12.83559 -12.79453 -12.63289 -12.47602 -12.04494 -11.90485 -11.80782 -11.59018 -11.50590 -11.23682 -11.09625 -11.02465 -10.80694 -10.67127 -10.50988 -10.24220 -10.14446 -10.02199 -9.53407 -9.25100 -9.13977 -8.86982 -8.40881 -8.16961 -7.55517 -6.05303 -4.13512 0.79710 1.19178 1.70235 2.76945 2.93430 3.28213 3.33374 3.34360 3.40116 3.43867 4.05673 4.28421 4.39384 4.42756 4.51065 4.63860 4.70099 4.80329 5.03949 5.15618 5.20701 5.24719 5.27973 5.32143 5.35276 5.45379 5.46837 5.57478 5.73342 5.79198 6.02091 6.09103 6.15685 6.31156 6.47841 6.64527 6.79669 6.85836 7.08917 7.46696 7.55125 7.73610 7.84542 8.04192 8.22036 8.55831 8.85507 9.09197 9.52923 10.99954 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022641 B = 0.002385 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.406792 B =11736.685744 C =11998.776272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.259 3.741 3 H 0.062 0.938 4 C -0.525 4.525 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.594 5.594 13 C 0.085 3.915 14 C 0.508 3.492 15 O -0.544 6.544 16 C -0.069 4.069 17 C 0.119 3.881 18 C -0.250 4.250 19 S 0.084 5.916 20 C 0.226 3.774 21 N -0.440 5.440 22 C 0.026 3.974 23 C 0.063 3.937 24 O -0.383 6.383 25 C 0.068 3.932 26 C 0.006 3.994 27 N -0.481 5.481 28 H 0.093 0.907 29 H 0.011 0.989 30 H 0.030 0.970 31 H 0.264 0.736 32 H 0.049 0.951 33 H 0.073 0.927 34 H 0.052 0.948 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.176 0.824 38 H 0.056 0.944 39 H 0.106 0.894 40 H 0.066 0.934 41 H 0.107 0.893 42 H 0.067 0.933 43 H 0.108 0.892 44 H 0.100 0.900 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.007 -0.460 -22.738 24.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.159 3.841 3 H 0.080 0.920 4 C -0.564 4.564 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.326 5.326 13 C -0.059 4.059 14 C 0.294 3.706 15 O -0.422 6.422 16 C -0.112 4.112 17 C -0.012 4.012 18 C -0.390 4.390 19 S 0.335 5.665 20 C -0.144 4.144 21 N -0.161 5.161 22 C -0.102 4.102 23 C -0.015 4.015 24 O -0.301 6.301 25 C -0.009 4.009 26 C -0.122 4.122 27 N -0.200 5.200 28 H 0.112 0.888 29 H 0.030 0.970 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.194 0.806 38 H 0.074 0.926 39 H 0.124 0.876 40 H 0.085 0.915 41 H 0.125 0.875 42 H 0.085 0.915 43 H 0.126 0.874 44 H 0.118 0.882 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.167 1.091 -22.926 24.362 hybrid contribution 0.154 -1.599 1.751 2.376 sum 8.321 -0.508 -21.175 22.757 Atomic orbital electron populations 1.22096 0.98283 0.99327 1.00859 1.18918 0.90827 0.94493 0.79873 0.91978 1.21282 1.31828 1.12944 0.90311 0.92354 1.24901 0.94989 0.94991 0.98953 1.69873 1.36358 1.22574 1.23831 0.86556 0.79202 0.79567 0.82043 1.20294 1.21183 1.20231 1.48207 1.49100 1.11675 1.23587 1.21582 1.01723 0.83205 0.99369 1.20072 0.79521 0.87151 0.83850 1.90674 1.58063 1.16927 1.76564 1.20314 0.99815 0.96530 0.94541 1.19311 0.91039 0.97615 0.93251 1.26424 0.99441 1.05801 1.07335 1.83791 1.12472 1.41539 1.28734 1.25015 0.92338 0.97701 0.99314 1.58545 1.28388 1.23371 1.05814 1.22989 1.01457 0.95458 0.90268 1.22768 0.88372 0.93955 0.96363 1.88008 1.45389 1.61496 1.35232 1.22654 0.99044 0.92373 0.86822 1.23131 0.90736 0.98297 1.00073 1.66112 1.34444 1.10039 1.09393 0.88828 0.96963 0.95098 0.92644 0.93249 0.90810 0.92895 0.87675 0.87646 0.80629 0.92596 0.87612 0.91549 0.87506 0.91479 0.87386 0.88193 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 8.95 37.16 0.33 -3.26 16 2 C 0.26 6.74 2.64 -69.08 -0.18 6.56 16 3 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 4 C -0.52 -14.30 8.37 -34.44 -0.29 -14.59 16 5 H 0.06 1.55 7.65 -52.49 -0.40 1.15 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.47 11.32 55.43 0.63 -24.84 16 8 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.59 -12.82 2.75 -175.26 -0.48 -13.30 16 13 C 0.09 1.41 9.48 59.85 0.57 1.98 16 14 C 0.51 10.80 7.67 -10.98 -0.08 10.72 16 15 O -0.54 -14.04 15.36 5.55 0.09 -13.96 16 16 C -0.07 -1.08 4.66 -29.03 -0.14 -1.21 16 17 C 0.12 1.95 5.23 -84.18 -0.44 1.51 16 18 C -0.25 -3.68 11.11 29.02 0.32 -3.35 16 19 S 0.08 1.05 21.18 -107.50 -2.28 -1.23 16 20 C 0.23 3.21 6.81 -87.68 -0.60 2.61 16 21 N -0.44 -5.18 4.79 -175.07 -0.84 -6.02 16 22 C 0.03 0.25 5.55 -3.71 -0.02 0.23 16 23 C 0.06 0.49 7.01 37.21 0.26 0.75 16 24 O -0.38 -3.41 10.83 -35.23 -0.38 -3.80 16 25 C 0.07 0.50 7.01 37.21 0.26 0.76 16 26 C 0.01 0.05 4.67 -3.71 -0.02 0.03 16 27 N -0.48 -7.98 10.27 -11.36 -0.12 -8.09 16 28 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 29 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.03 0.69 6.66 -51.93 -0.35 0.34 16 31 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 1.24 6.43 -51.93 -0.33 0.91 16 34 H 0.05 0.68 6.44 -51.93 -0.33 0.34 16 35 H 0.11 1.46 7.40 -51.93 -0.38 1.07 16 36 H 0.11 1.33 8.11 -51.93 -0.42 0.91 16 37 H 0.18 2.28 8.06 -52.49 -0.42 1.86 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.11 1.11 7.92 -51.93 -0.41 0.69 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.10 0.84 7.65 -51.93 -0.40 0.44 16 45 H 0.06 0.53 7.88 -51.93 -0.41 0.12 16 LS Contribution 374.29 15.07 5.64 5.64 Total: -1.00 -34.76 374.29 -9.51 -44.27 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -6.63 Total: 0.80 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -0.12 Total: 4.40 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: -0.81 Total: -52.26 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.30 Total: -17.75 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.28 Total: -1.23 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.76 -9.51 -44.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367393849.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.277 kcal (2) G-P(sol) polarization free energy of solvation -34.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds