Wall clock time and date at job start Sat Apr 11 2020 05:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47051 * 2 1 4 4 C 1.50699 * 109.47096 * 120.00262 * 2 1 3 5 5 H 1.08000 * 119.99896 * 114.43954 * 4 2 1 6 6 C 1.37871 * 119.99833 * 294.43325 * 4 2 1 7 7 N 1.31515 * 119.99698 * 158.96939 * 6 4 2 8 8 Si 1.86796 * 120.00251 * 339.23962 * 6 4 2 9 9 H 1.48500 * 109.47360 * 179.72812 * 8 6 4 10 10 H 1.48504 * 109.47022 * 299.72306 * 8 6 4 11 11 H 1.48504 * 109.47110 * 59.72485 * 8 6 4 12 12 N 1.46503 * 109.47326 * 240.00468 * 2 1 3 13 13 C 1.34777 * 120.00182 * 84.99323 * 12 2 1 14 14 O 1.21360 * 120.00097 * 0.02562 * 13 12 2 15 15 C 1.49333 * 120.00216 * 179.97438 * 13 12 2 16 16 O 1.21383 * 119.99983 * 0.02562 * 15 13 12 17 17 N 1.34772 * 120.00669 * 180.02562 * 15 13 12 18 18 C 1.39556 * 120.00789 * 184.92316 * 17 15 13 19 19 C 1.38801 * 120.56547 * 331.56781 * 18 17 15 20 20 N 1.31801 * 120.76286 * 179.74924 * 19 18 17 21 21 C 1.31964 * 122.08646 * 0.54071 * 20 19 18 22 22 C 1.37972 * 121.05959 * 359.72258 * 21 20 19 23 23 C 1.39706 * 119.10501 * 0.02562 * 22 21 20 24 24 C 1.48275 * 120.94220 * 180.02562 * 23 22 21 25 25 C 1.39384 * 120.12808 * 129.70210 * 24 23 22 26 26 C 1.38009 * 119.87166 * 179.74680 * 25 24 23 27 27 C 1.38331 * 120.12295 * 0.50445 * 26 25 24 28 28 C 1.38329 * 120.25624 * 359.77325 * 27 26 25 29 29 C 1.37994 * 120.12995 * 359.97160 * 28 27 26 30 30 H 1.09002 * 109.47153 * 53.23677 * 1 2 3 31 31 H 1.08997 * 109.46781 * 173.23207 * 1 2 3 32 32 H 1.08996 * 109.47115 * 293.23320 * 1 2 3 33 33 H 0.96997 * 120.00038 * 355.18907 * 7 6 4 34 34 H 0.97000 * 120.00051 * 265.00233 * 12 2 1 35 35 H 0.97008 * 119.99326 * 4.92123 * 17 15 13 36 36 H 1.08000 * 119.61420 * 0.02562 * 19 18 17 37 37 H 1.07997 * 119.46974 * 179.75077 * 21 20 19 38 38 H 1.08002 * 120.44793 * 179.97438 * 22 21 20 39 39 H 1.08001 * 120.06562 * 359.97438 * 25 24 23 40 40 H 1.07996 * 119.93944 * 180.25589 * 26 25 24 41 41 H 1.08004 * 119.86764 * 179.74317 * 27 26 25 42 42 H 1.08000 * 119.93043 * 179.97438 * 28 27 26 43 43 H 1.07996 * 120.06699 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.5772 -1.6379 1.1338 6 6 1.7965 -0.1763 2.4794 7 7 1.8473 -0.9465 3.5442 8 14 1.3973 1.6397 2.6585 9 1 1.1812 1.9600 4.0923 10 1 2.5274 2.4488 2.1355 11 1 0.1660 1.9540 1.8900 12 7 2.0184 -0.6905 -1.1962 13 6 2.1470 -0.0181 -2.3572 14 8 1.8587 1.1595 -2.4116 15 6 2.6454 -0.7218 -3.5764 16 8 2.9342 -1.8996 -3.5220 17 7 2.7746 -0.0494 -4.7373 18 6 3.1414 -0.7284 -5.9000 19 6 3.9188 -1.8763 -5.8316 20 7 4.2634 -2.5233 -6.9269 21 6 3.9008 -2.1123 -8.1274 22 6 3.1320 -0.9781 -8.2893 23 6 2.7358 -0.2586 -7.1592 24 6 1.9089 0.9656 -7.2860 25 6 0.7517 1.1104 -6.5227 26 6 -0.0112 2.2543 -6.6411 27 6 0.3651 3.2516 -7.5228 28 6 1.5095 3.1108 -8.2871 29 6 2.2829 1.9736 -8.1733 30 1 -0.3633 0.6151 -0.8233 31 1 -0.3633 -1.0205 -0.1211 32 1 -0.3633 0.4054 0.9443 33 1 1.9814 -1.9021 3.4456 34 1 2.2491 -1.6317 -1.1528 35 1 2.6124 0.9066 -4.7645 36 1 4.2412 -2.2460 -4.8695 37 1 4.2103 -2.6730 -8.9969 38 1 2.8412 -0.6504 -9.2765 39 1 0.4545 0.3305 -5.8372 40 1 -0.9058 2.3695 -6.0472 41 1 -0.2372 4.1433 -7.6152 42 1 1.7982 3.8925 -8.9742 43 1 3.1763 1.8650 -8.7702 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429994721.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:14 Heat of formation + Delta-G solvation = -2.969263 kcal Electronic energy + Delta-G solvation = -28330.138572 eV Core-core repulsion = 24340.408949 eV Total energy + Delta-G solvation = -3989.729623 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.43265 -40.02150 -39.06588 -38.30655 -35.84319 -35.04494 -33.49966 -32.54838 -31.26678 -30.61669 -29.99436 -29.66720 -25.54271 -24.87163 -24.53884 -23.26646 -22.52414 -21.63643 -20.87107 -19.84830 -18.97978 -17.90618 -17.61389 -17.34863 -16.50975 -16.38694 -16.18060 -15.42966 -15.25127 -15.10307 -14.95574 -14.32766 -14.11979 -14.00722 -13.71635 -13.54244 -13.46798 -13.33895 -13.21604 -12.80839 -12.59116 -12.32509 -11.85779 -11.65974 -11.53772 -11.49103 -11.38459 -11.18111 -10.59697 -10.18157 -10.09568 -9.91831 -9.73623 -9.37397 -9.28212 -9.23024 -9.00825 -8.52514 -8.44639 -8.41220 -6.67608 -4.30870 0.42031 0.79114 1.06239 1.28333 1.65408 2.37710 3.32254 3.34818 3.38930 3.40553 3.53897 3.63647 3.82396 4.05683 4.36324 4.38666 4.47127 4.61345 4.66302 4.74072 4.78409 4.81291 4.98689 5.04686 5.14129 5.21238 5.35712 5.44833 5.67600 5.73459 5.79220 5.89011 6.11105 6.16800 6.19498 6.22344 6.37674 6.49552 6.52246 6.60562 6.73887 6.79713 7.03150 7.16634 7.42243 7.57410 7.81161 8.11423 8.19483 8.38810 8.70435 9.36569 10.71839 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013669 B = 0.003032 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.909034 B = 9233.800749 C =10906.379063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.241 3.759 3 H 0.047 0.953 4 C -0.627 4.627 5 H 0.066 0.934 6 C 0.046 3.954 7 N -0.888 5.888 8 Si 1.034 2.966 9 H -0.281 1.281 10 H -0.279 1.279 11 H -0.272 1.272 12 N -0.659 5.659 13 C 0.496 3.504 14 O -0.533 6.533 15 C 0.508 3.492 16 O -0.498 6.498 17 N -0.641 5.641 18 C 0.109 3.891 19 C 0.096 3.904 20 N -0.464 5.464 21 C 0.078 3.922 22 C -0.141 4.141 23 C -0.031 4.031 24 C -0.060 4.060 25 C -0.100 4.100 26 C -0.112 4.112 27 C -0.111 4.111 28 C -0.120 4.120 29 C -0.099 4.099 30 H 0.031 0.969 31 H 0.047 0.953 32 H 0.065 0.935 33 H 0.272 0.728 34 H 0.407 0.593 35 H 0.425 0.575 36 H 0.183 0.817 37 H 0.158 0.842 38 H 0.140 0.860 39 H 0.123 0.877 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.721 5.389 -26.113 26.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.138 3.862 3 H 0.064 0.936 4 C -0.664 4.664 5 H 0.084 0.916 6 C -0.162 4.162 7 N -0.520 5.520 8 Si 0.861 3.139 9 H -0.207 1.207 10 H -0.205 1.205 11 H -0.198 1.198 12 N -0.308 5.308 13 C 0.275 3.725 14 O -0.412 6.412 15 C 0.291 3.709 16 O -0.371 6.371 17 N -0.288 5.288 18 C 0.011 3.989 19 C -0.063 4.063 20 N -0.173 5.173 21 C -0.079 4.079 22 C -0.162 4.162 23 C -0.042 4.042 24 C -0.060 4.060 25 C -0.118 4.118 26 C -0.130 4.130 27 C -0.129 4.129 28 C -0.138 4.138 29 C -0.118 4.118 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.243 0.757 35 H 0.264 0.736 36 H 0.200 0.800 37 H 0.176 0.824 38 H 0.157 0.843 39 H 0.141 0.859 40 H 0.146 0.854 41 H 0.143 0.857 42 H 0.144 0.856 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.548 5.795 -24.750 25.425 hybrid contribution -0.216 -0.488 -1.274 1.381 sum -0.764 5.307 -26.024 26.570 Atomic orbital electron populations 1.22478 0.98249 1.00437 1.00648 1.19239 0.90979 0.94313 0.81625 0.93573 1.22019 1.42222 1.11532 0.90654 0.91579 1.25657 0.93169 1.05840 0.91535 1.70853 1.42729 1.06999 1.31393 0.84189 0.77711 0.75474 0.76520 1.20677 1.20545 1.19809 1.46268 1.61124 1.14753 1.08637 1.19610 0.81205 0.87283 0.84433 1.90738 1.50784 1.15049 1.84615 1.20975 0.78090 0.87033 0.84752 1.90700 1.46530 1.15623 1.84272 1.43175 1.66238 1.13269 1.06085 1.18947 0.98093 0.96187 0.85694 1.23448 0.93021 0.91216 0.98661 1.67770 1.20367 1.30681 0.98438 1.22715 0.95464 0.94251 0.95430 1.22053 0.99449 0.96269 0.98399 1.18936 0.97641 0.95791 0.91803 1.18604 0.95328 0.93409 0.98670 1.21306 0.94029 0.98110 0.98394 1.21174 1.00010 0.93463 0.98340 1.21303 0.96792 0.98945 0.95863 1.21111 0.95198 0.97667 0.99795 1.21200 0.99688 0.93225 0.97652 0.95008 0.93397 0.91622 0.91767 0.75725 0.73589 0.80043 0.82430 0.84262 0.85852 0.85385 0.85727 0.85640 0.85660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.44 9.18 37.16 0.34 -3.10 16 2 C 0.24 5.58 2.15 -69.08 -0.15 5.43 16 3 H 0.05 1.13 6.18 -51.93 -0.32 0.81 16 4 C -0.63 -16.58 8.97 -34.44 -0.31 -16.88 16 5 H 0.07 1.85 7.96 -52.49 -0.42 1.43 16 6 C 0.05 1.26 5.24 -17.82 -0.09 1.17 16 7 N -0.89 -25.84 13.70 55.43 0.76 -25.08 16 8 Si 1.03 24.06 26.37 -169.99 -4.48 19.58 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.27 -5.88 5.97 56.52 0.34 -5.54 16 12 N -0.66 -13.29 5.06 -55.40 -0.28 -13.57 16 13 C 0.50 9.18 7.85 -11.64 -0.09 9.09 16 14 O -0.53 -10.66 16.14 5.49 0.09 -10.57 16 15 C 0.51 8.07 7.77 -11.64 -0.09 7.98 16 16 O -0.50 -8.47 13.55 5.47 0.07 -8.39 16 17 N -0.64 -8.58 4.36 -10.02 -0.04 -8.62 16 18 C 0.11 1.39 6.37 -83.33 -0.53 0.86 16 19 C 0.10 1.33 9.94 -17.36 -0.17 1.16 16 20 N -0.46 -6.03 10.34 -13.16 -0.14 -6.17 16 21 C 0.08 0.77 11.16 -17.59 -0.20 0.57 16 22 C -0.14 -1.27 9.65 -39.13 -0.38 -1.64 16 23 C -0.03 -0.34 5.51 -104.41 -0.58 -0.91 16 24 C -0.06 -0.60 5.03 -104.91 -0.53 -1.12 16 25 C -0.10 -1.04 8.27 -39.24 -0.32 -1.37 16 26 C -0.11 -1.03 10.03 -39.63 -0.40 -1.43 16 27 C -0.11 -0.88 10.04 -39.51 -0.40 -1.28 16 28 C -0.12 -0.90 10.03 -39.64 -0.40 -1.30 16 29 C -0.10 -0.82 9.55 -39.24 -0.37 -1.20 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.07 1.45 5.22 -51.93 -0.27 1.18 16 33 H 0.27 7.86 8.73 -40.82 -0.36 7.50 16 34 H 0.41 7.85 7.99 -40.82 -0.33 7.52 16 35 H 0.42 5.39 6.88 -40.82 -0.28 5.11 16 36 H 0.18 2.72 5.71 -52.49 -0.30 2.42 16 37 H 0.16 1.05 8.06 -52.49 -0.42 0.62 16 38 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.12 1.38 7.71 -52.49 -0.40 0.98 16 40 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 42 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 43 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 367.47 15.07 5.54 5.54 Total: -1.00 -30.49 367.47 -8.07 -38.56 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -4.92 Total: 12.72 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -4.66 Total: -3.98 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: 0.30 Total: -53.44 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: 0.16 Total: -18.96 kcal Atomic # 14 Polarization: 24.06 SS G_CDS: -4.48 Total: 19.58 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.49 -8.07 -38.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429994721.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.587 kcal (2) G-P(sol) polarization free energy of solvation -30.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds