Wall clock time and date at job start Sat Apr 11 2020 05:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47051 * 2 1 4 4 C 1.50699 * 109.47096 * 120.00262 * 2 1 3 5 5 H 1.08000 * 119.99896 * 114.43954 * 4 2 1 6 6 C 1.37871 * 119.99833 * 294.43325 * 4 2 1 7 7 N 1.31515 * 119.99698 * 158.96939 * 6 4 2 8 8 Si 1.86796 * 120.00251 * 339.23962 * 6 4 2 9 9 H 1.48500 * 109.47360 * 179.72812 * 8 6 4 10 10 H 1.48504 * 109.47022 * 299.72306 * 8 6 4 11 11 H 1.48504 * 109.47110 * 59.72485 * 8 6 4 12 12 N 1.46503 * 109.47326 * 240.00468 * 2 1 3 13 13 C 1.34777 * 120.00182 * 84.99323 * 12 2 1 14 14 O 1.21360 * 120.00097 * 0.02562 * 13 12 2 15 15 C 1.49333 * 120.00216 * 179.97438 * 13 12 2 16 16 O 1.21383 * 119.99983 * 0.02562 * 15 13 12 17 17 N 1.34772 * 120.00669 * 180.02562 * 15 13 12 18 18 C 1.39556 * 120.00789 * 184.92316 * 17 15 13 19 19 C 1.38801 * 120.56547 * 331.56781 * 18 17 15 20 20 N 1.31801 * 120.76286 * 179.74924 * 19 18 17 21 21 C 1.31964 * 122.08646 * 0.54071 * 20 19 18 22 22 C 1.37972 * 121.05959 * 359.72258 * 21 20 19 23 23 C 1.39706 * 119.10501 * 0.02562 * 22 21 20 24 24 C 1.48275 * 120.94220 * 180.02562 * 23 22 21 25 25 C 1.39384 * 120.12808 * 129.70210 * 24 23 22 26 26 C 1.38009 * 119.87166 * 179.74680 * 25 24 23 27 27 C 1.38331 * 120.12295 * 0.50445 * 26 25 24 28 28 C 1.38329 * 120.25624 * 359.77325 * 27 26 25 29 29 C 1.37994 * 120.12995 * 359.97160 * 28 27 26 30 30 H 1.09002 * 109.47153 * 53.23677 * 1 2 3 31 31 H 1.08997 * 109.46781 * 173.23207 * 1 2 3 32 32 H 1.08996 * 109.47115 * 293.23320 * 1 2 3 33 33 H 0.96997 * 120.00038 * 355.18907 * 7 6 4 34 34 H 0.97000 * 120.00051 * 265.00233 * 12 2 1 35 35 H 0.97008 * 119.99326 * 4.92123 * 17 15 13 36 36 H 1.08000 * 119.61420 * 0.02562 * 19 18 17 37 37 H 1.07997 * 119.46974 * 179.75077 * 21 20 19 38 38 H 1.08002 * 120.44793 * 179.97438 * 22 21 20 39 39 H 1.08001 * 120.06562 * 359.97438 * 25 24 23 40 40 H 1.07996 * 119.93944 * 180.25589 * 26 25 24 41 41 H 1.08004 * 119.86764 * 179.74317 * 27 26 25 42 42 H 1.08000 * 119.93043 * 179.97438 * 28 27 26 43 43 H 1.07996 * 120.06699 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.5772 -1.6379 1.1338 6 6 1.7965 -0.1763 2.4794 7 7 1.8473 -0.9465 3.5442 8 14 1.3973 1.6397 2.6585 9 1 1.1812 1.9600 4.0923 10 1 2.5274 2.4488 2.1355 11 1 0.1660 1.9540 1.8900 12 7 2.0184 -0.6905 -1.1962 13 6 2.1470 -0.0181 -2.3572 14 8 1.8587 1.1595 -2.4116 15 6 2.6454 -0.7218 -3.5764 16 8 2.9342 -1.8996 -3.5220 17 7 2.7746 -0.0494 -4.7373 18 6 3.1414 -0.7284 -5.9000 19 6 3.9188 -1.8763 -5.8316 20 7 4.2634 -2.5233 -6.9269 21 6 3.9008 -2.1123 -8.1274 22 6 3.1320 -0.9781 -8.2893 23 6 2.7358 -0.2586 -7.1592 24 6 1.9089 0.9656 -7.2860 25 6 0.7517 1.1104 -6.5227 26 6 -0.0112 2.2543 -6.6411 27 6 0.3651 3.2516 -7.5228 28 6 1.5095 3.1108 -8.2871 29 6 2.2829 1.9736 -8.1733 30 1 -0.3633 0.6151 -0.8233 31 1 -0.3633 -1.0205 -0.1211 32 1 -0.3633 0.4054 0.9443 33 1 1.9814 -1.9021 3.4456 34 1 2.2491 -1.6317 -1.1528 35 1 2.6124 0.9066 -4.7645 36 1 4.2412 -2.2460 -4.8695 37 1 4.2103 -2.6730 -8.9969 38 1 2.8412 -0.6504 -9.2765 39 1 0.4545 0.3305 -5.8372 40 1 -0.9058 2.3695 -6.0472 41 1 -0.2372 4.1433 -7.6152 42 1 1.7982 3.8925 -8.9742 43 1 3.1763 1.8650 -8.7702 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000429994721.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:14 Heat of formation + Delta-G solvation = -22.969427 kcal Electronic energy + Delta-G solvation = -28331.005844 eV Core-core repulsion = 24340.408949 eV Total energy + Delta-G solvation = -3990.596895 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.52992 -41.18771 -39.90159 -39.57579 -37.28085 -36.46837 -34.58162 -34.26625 -31.91700 -31.80561 -31.38137 -30.55933 -27.07710 -26.57551 -25.35087 -24.31564 -23.28309 -22.41372 -22.36655 -21.44186 -20.46477 -19.32732 -18.72052 -18.51264 -17.61726 -17.52794 -17.13466 -16.87366 -16.54729 -15.83871 -15.77795 -15.63491 -15.36443 -15.15926 -14.98083 -14.72369 -14.67292 -14.34974 -14.28644 -14.21252 -13.95645 -13.60097 -13.40917 -13.37493 -12.73751 -12.45526 -12.36764 -12.20849 -12.07738 -12.01318 -11.71434 -11.23020 -10.91326 -10.81815 -10.58910 -10.52786 -10.20857 -9.92591 -9.75391 -9.38667 -8.85358 -6.48619 -0.44039 -0.13104 0.34017 0.42378 0.61071 1.10284 1.47633 1.51869 1.71837 1.96088 2.43088 2.48396 2.65732 2.83868 2.94205 3.26698 3.28981 3.55217 3.70654 3.85905 4.00780 4.02254 4.18430 4.25061 4.40133 4.50913 4.54223 4.59768 4.64516 4.67018 4.67599 4.91303 4.96774 4.97872 5.04243 5.08308 5.25056 5.39906 5.47613 5.48465 5.51484 5.56577 5.63207 5.74862 5.96540 5.99687 6.27499 6.44300 6.53534 6.86733 6.92643 7.26405 8.53433 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013669 B = 0.003032 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.909034 B = 9233.800749 C =10906.379063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.244 3.756 3 H 0.040 0.960 4 C -0.627 4.627 5 H 0.038 0.962 6 C 0.002 3.998 7 N -0.919 5.919 8 Si 1.069 2.931 9 H -0.282 1.282 10 H -0.270 1.270 11 H -0.243 1.243 12 N -0.667 5.667 13 C 0.501 3.499 14 O -0.545 6.545 15 C 0.516 3.484 16 O -0.513 6.513 17 N -0.624 5.624 18 C 0.086 3.914 19 C 0.078 3.922 20 N -0.490 5.490 21 C 0.083 3.917 22 C -0.129 4.129 23 C -0.025 4.025 24 C -0.074 4.074 25 C -0.118 4.118 26 C -0.126 4.126 27 C -0.111 4.111 28 C -0.118 4.118 29 C -0.097 4.097 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.260 0.740 34 H 0.410 0.590 35 H 0.428 0.572 36 H 0.161 0.839 37 H 0.194 0.806 38 H 0.177 0.823 39 H 0.105 0.895 40 H 0.132 0.868 41 H 0.147 0.853 42 H 0.154 0.846 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.218 7.621 -29.861 30.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.140 3.860 3 H 0.057 0.943 4 C -0.665 4.665 5 H 0.056 0.944 6 C -0.200 4.200 7 N -0.553 5.553 8 Si 0.890 3.110 9 H -0.207 1.207 10 H -0.195 1.195 11 H -0.167 1.167 12 N -0.316 5.316 13 C 0.281 3.719 14 O -0.424 6.424 15 C 0.298 3.702 16 O -0.388 6.388 17 N -0.270 5.270 18 C -0.010 4.010 19 C -0.081 4.081 20 N -0.199 5.199 21 C -0.074 4.074 22 C -0.148 4.148 23 C -0.035 4.035 24 C -0.074 4.074 25 C -0.136 4.136 26 C -0.144 4.144 27 C -0.129 4.129 28 C -0.136 4.136 29 C -0.115 4.115 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.245 0.755 35 H 0.268 0.732 36 H 0.178 0.822 37 H 0.211 0.789 38 H 0.194 0.806 39 H 0.124 0.876 40 H 0.150 0.850 41 H 0.164 0.836 42 H 0.172 0.828 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.040 8.025 -28.546 29.671 hybrid contribution -0.021 -1.205 -0.322 1.247 sum -1.060 6.820 -28.868 29.682 Atomic orbital electron populations 1.22364 0.96707 1.01044 1.01073 1.18998 0.92037 0.93487 0.81431 0.94274 1.22172 1.41361 1.10557 0.92378 0.94365 1.26906 0.92660 1.09031 0.91408 1.70960 1.45413 1.06496 1.32386 0.83759 0.79160 0.71184 0.76933 1.20745 1.19484 1.16727 1.46093 1.61966 1.14879 1.08672 1.19901 0.80311 0.87023 0.84678 1.90718 1.51076 1.15617 1.84990 1.20335 0.78498 0.86645 0.84690 1.90714 1.47578 1.16092 1.84439 1.42942 1.65222 1.13231 1.05633 1.18993 0.99444 0.96566 0.86039 1.23148 0.94299 0.92112 0.98503 1.67750 1.21454 1.31419 0.99296 1.23375 0.94279 0.94468 0.95245 1.22458 0.97873 0.95150 0.99356 1.19159 0.96946 0.96058 0.91317 1.18624 0.95258 0.93778 0.99710 1.21268 0.95064 0.98397 0.98901 1.21339 1.00301 0.93620 0.99117 1.21624 0.97155 0.99124 0.95016 1.21481 0.94509 0.97953 0.99626 1.21461 1.00306 0.92751 0.97005 0.93291 0.93106 0.92044 0.93106 0.75459 0.73168 0.82231 0.78894 0.80554 0.87648 0.84978 0.83572 0.82840 0.83566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.46 9.18 71.98 0.66 -5.80 16 2 C 0.24 11.30 2.15 44.24 0.10 11.39 16 3 H 0.04 1.89 6.18 -2.38 -0.01 1.88 16 4 C -0.63 -33.93 8.97 25.60 0.23 -33.70 16 5 H 0.04 2.23 7.96 -2.91 -0.02 2.21 16 6 C 0.00 0.10 5.24 84.65 0.44 0.55 16 7 N -0.92 -54.91 13.70 21.45 0.29 -54.61 16 8 Si 1.07 48.02 26.37 68.60 1.81 49.83 16 9 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 10 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 11 H -0.24 -9.75 5.97 99.48 0.59 -9.15 16 12 N -0.67 -27.33 5.06 -447.54 -2.27 -29.59 16 13 C 0.50 18.68 7.85 87.23 0.68 19.36 16 14 O -0.54 -21.56 16.14 -3.28 -0.05 -21.61 16 15 C 0.52 16.78 7.77 87.23 0.68 17.46 16 16 O -0.51 -18.18 13.55 -3.35 -0.05 -18.22 16 17 N -0.62 -16.86 4.36 -303.96 -1.32 -18.18 16 18 C 0.09 2.19 6.37 38.57 0.25 2.44 16 19 C 0.08 2.19 9.94 84.83 0.84 3.03 16 20 N -0.49 -12.39 10.34 -195.54 -2.02 -14.41 16 21 C 0.08 1.41 11.16 84.61 0.94 2.35 16 22 C -0.13 -1.88 9.65 22.56 0.22 -1.66 16 23 C -0.02 -0.48 5.51 -19.73 -0.11 -0.59 16 24 C -0.07 -1.31 5.03 -20.05 -0.10 -1.41 16 25 C -0.12 -2.35 8.27 22.49 0.19 -2.17 16 26 C -0.13 -2.14 10.03 22.24 0.22 -1.92 16 27 C -0.11 -1.45 10.04 22.31 0.22 -1.22 16 28 C -0.12 -1.33 10.03 22.23 0.22 -1.10 16 29 C -0.10 -1.27 9.55 22.49 0.21 -1.05 16 30 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.06 2.62 5.22 -2.39 -0.01 2.61 16 33 H 0.26 15.65 8.73 -92.71 -0.81 14.84 16 34 H 0.41 16.37 7.99 -92.71 -0.74 15.63 16 35 H 0.43 10.84 6.88 -92.70 -0.64 10.20 16 36 H 0.16 5.10 5.71 -2.91 -0.02 5.08 16 37 H 0.19 1.78 8.06 -2.91 -0.02 1.75 16 38 H 0.18 1.27 8.06 -2.91 -0.02 1.25 16 39 H 0.11 2.41 7.71 -2.91 -0.02 2.39 16 40 H 0.13 2.02 8.06 -2.91 -0.02 1.99 16 41 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 42 H 0.15 0.86 8.06 -2.91 -0.02 0.84 16 43 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 Total: -1.00 -67.71 367.47 1.85 -65.86 By element: Atomic # 1 Polarization: 35.43 SS G_CDS: -0.45 Total: 34.98 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: 5.90 Total: 5.96 kcal Atomic # 7 Polarization: -111.48 SS G_CDS: -5.32 Total: -116.80 kcal Atomic # 8 Polarization: -39.74 SS G_CDS: -0.10 Total: -39.83 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 1.81 Total: 49.83 kcal Total: -67.71 1.85 -65.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429994721.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.893 kcal (2) G-P(sol) polarization free energy of solvation -67.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds